HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-MAY-15 4ZYX TITLE HUMAN GAR TRANSFORMYLASE IN COMPLEX WITH GAR AND (S)-2-({4-[4-(2- TITLE 2 AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]-PYRIMIDIN-6-YL) TITLE 3 BUTYL]THIOPHENE-2-CARBONYL}AMINO)PENTANEDIOIC ACID (AGF117) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAR TRANSFORMYLASE DOMAIN; COMPND 5 EC: 2.1.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GART, PGFT, PRGS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GAR TRANSFORMYLASE, ANTIFOLATE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.DEIS,C.E.DANN III REVDAT 5 27-SEP-23 4ZYX 1 REMARK REVDAT 4 04-DEC-19 4ZYX 1 REMARK REVDAT 3 20-SEP-17 4ZYX 1 REMARK REVDAT 2 22-FEB-17 4ZYX 1 JRNL REVDAT 1 20-APR-16 4ZYX 0 JRNL AUTH S.M.DEIS,A.DOSHI,Z.HOU,L.H.MATHERLY,A.GANGJEE,C.E.DANN JRNL TITL STRUCTURAL AND ENZYMATIC ANALYSIS OF TUMOR-TARGETED JRNL TITL 2 ANTIFOLATES THAT INHIBIT GLYCINAMIDE RIBONUCLEOTIDE JRNL TITL 3 FORMYLTRANSFERASE. JRNL REF BIOCHEMISTRY V. 55 4574 2016 JRNL REFN ISSN 1520-4995 JRNL PMID 27439469 JRNL DOI 10.1021/ACS.BIOCHEM.6B00412 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX.REFINE 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 40257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9091 - 3.9732 0.96 2820 145 0.1357 0.1458 REMARK 3 2 3.9732 - 3.1540 1.00 2792 148 0.1524 0.1835 REMARK 3 3 3.1540 - 2.7555 1.00 2776 147 0.1709 0.2021 REMARK 3 4 2.7555 - 2.5036 1.00 2745 145 0.1768 0.1973 REMARK 3 5 2.5036 - 2.3241 1.00 2748 146 0.1650 0.1749 REMARK 3 6 2.3241 - 2.1871 1.00 2743 140 0.1538 0.1754 REMARK 3 7 2.1871 - 2.0776 1.00 2741 145 0.1512 0.1723 REMARK 3 8 2.0776 - 1.9872 1.00 2691 144 0.1591 0.2134 REMARK 3 9 1.9872 - 1.9107 1.00 2748 140 0.1660 0.1867 REMARK 3 10 1.9107 - 1.8447 1.00 2701 140 0.1705 0.1835 REMARK 3 11 1.8447 - 1.7871 1.00 2720 147 0.1638 0.1689 REMARK 3 12 1.7871 - 1.7360 1.00 2710 138 0.1616 0.1894 REMARK 3 13 1.7360 - 1.6903 1.00 2726 142 0.1687 0.1924 REMARK 3 14 1.6903 - 1.6490 0.96 2594 135 0.1828 0.2099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1695 REMARK 3 ANGLE : 1.104 2323 REMARK 3 CHIRALITY : 0.046 270 REMARK 3 PLANARITY : 0.005 306 REMARK 3 DIHEDRAL : 13.810 632 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 808 THROUGH 818 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4197 25.3859 24.4339 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.1069 REMARK 3 T33: 0.0857 T12: -0.0380 REMARK 3 T13: 0.0260 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.0149 L22: 0.0119 REMARK 3 L33: 0.0080 L12: 0.0092 REMARK 3 L13: -0.0087 L23: -0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0400 S13: 0.0740 REMARK 3 S21: -0.0710 S22: -0.0195 S23: -0.0322 REMARK 3 S31: -0.0246 S32: 0.0051 S33: -0.0096 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 819 THROUGH 835 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2834 22.1030 26.8416 REMARK 3 T TENSOR REMARK 3 T11: 0.1078 T22: 0.1029 REMARK 3 T33: 0.1059 T12: 0.0099 REMARK 3 T13: -0.0006 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.0054 L22: 0.0078 REMARK 3 L33: 0.0021 L12: 0.0068 REMARK 3 L13: -0.0017 L23: 0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.0230 S13: 0.0424 REMARK 3 S21: -0.0928 S22: -0.0190 S23: 0.0194 REMARK 3 S31: -0.0433 S32: -0.0785 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 836 THROUGH 855 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8632 30.6454 20.4718 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.0772 REMARK 3 T33: 0.1274 T12: -0.0427 REMARK 3 T13: 0.0314 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.0473 L22: 0.0066 REMARK 3 L33: 0.0452 L12: 0.0074 REMARK 3 L13: 0.0280 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0684 S12: 0.0081 S13: 0.1367 REMARK 3 S21: -0.1366 S22: 0.0081 S23: -0.0023 REMARK 3 S31: -0.0846 S32: 0.0500 S33: -0.0261 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 856 THROUGH 870 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4455 32.7106 21.4857 REMARK 3 T TENSOR REMARK 3 T11: 0.2887 T22: 0.1922 REMARK 3 T33: 0.2955 T12: -0.1064 REMARK 3 T13: 0.0886 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.0059 L22: 0.0016 REMARK 3 L33: 0.0316 L12: 0.0029 REMARK 3 L13: -0.0127 L23: -0.0036 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: 0.0593 S13: 0.0174 REMARK 3 S21: -0.0843 S22: 0.0045 S23: -0.0104 REMARK 3 S31: -0.1377 S32: 0.1798 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 871 THROUGH 884 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9459 29.1631 29.2610 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.1811 REMARK 3 T33: 0.3051 T12: -0.3539 REMARK 3 T13: 0.0585 T23: -0.2426 REMARK 3 L TENSOR REMARK 3 L11: 0.0111 L22: 0.0231 REMARK 3 L33: 0.0096 L12: -0.0084 REMARK 3 L13: 0.0016 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.0207 S13: 0.0372 REMARK 3 S21: 0.0025 S22: -0.0201 S23: -0.0410 REMARK 3 S31: -0.0105 S32: 0.0446 S33: -0.0487 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 885 THROUGH 906 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4727 22.2983 28.4251 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.1895 REMARK 3 T33: 0.1376 T12: -0.0474 REMARK 3 T13: 0.0140 T23: -0.0868 REMARK 3 L TENSOR REMARK 3 L11: 0.0185 L22: 0.0348 REMARK 3 L33: 0.0233 L12: 0.0192 REMARK 3 L13: 0.0074 L23: 0.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: -0.0267 S13: 0.0980 REMARK 3 S21: -0.0697 S22: 0.0594 S23: -0.1694 REMARK 3 S31: -0.0352 S32: 0.1463 S33: -0.0043 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 907 THROUGH 954 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5469 9.5968 19.8644 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.1146 REMARK 3 T33: 0.1030 T12: -0.0183 REMARK 3 T13: 0.0091 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.0359 L22: 0.0892 REMARK 3 L33: 0.0689 L12: -0.0580 REMARK 3 L13: -0.0021 L23: -0.0134 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0680 S13: 0.0488 REMARK 3 S21: -0.0479 S22: 0.0541 S23: -0.1054 REMARK 3 S31: 0.0088 S32: 0.1196 S33: -0.0668 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 955 THROUGH 968 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.1959 4.7655 11.7033 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.0842 REMARK 3 T33: 0.0714 T12: -0.0061 REMARK 3 T13: 0.0046 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: 0.0149 REMARK 3 L33: 0.0020 L12: 0.0011 REMARK 3 L13: -0.0001 L23: -0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: -0.0204 S13: 0.0371 REMARK 3 S21: -0.0618 S22: 0.0323 S23: -0.0210 REMARK 3 S31: 0.0060 S32: -0.0098 S33: 0.0021 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 969 THROUGH 992 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1578 13.3776 18.4053 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.0824 REMARK 3 T33: 0.0775 T12: -0.0071 REMARK 3 T13: 0.0088 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.0747 L22: 0.0203 REMARK 3 L33: 0.0124 L12: -0.0352 REMARK 3 L13: -0.0109 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: 0.0124 S13: 0.1144 REMARK 3 S21: 0.0103 S22: 0.0295 S23: -0.0289 REMARK 3 S31: -0.0276 S32: -0.0256 S33: -0.0106 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 993 THROUGH 1007 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.2829 8.0891 37.7358 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.1864 REMARK 3 T33: 0.1369 T12: 0.0455 REMARK 3 T13: 0.0089 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 0.0038 REMARK 3 L33: -0.0002 L12: -0.0015 REMARK 3 L13: 0.0015 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: -0.0361 S13: -0.0277 REMARK 3 S21: 0.0387 S22: -0.0410 S23: -0.0266 REMARK 3 S31: 0.0379 S32: 0.0331 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0001 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4X75 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % PEG4000, 2 % PEG400, 0.33 M NACL, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.23733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.61867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.61867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.23733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 807 REMARK 465 LYS A 1008 REMARK 465 GLU A 1009 REMARK 465 GLU A 1010 REMARK 465 HIS A 1011 REMARK 465 HIS A 1012 REMARK 465 HIS A 1013 REMARK 465 HIS A 1014 REMARK 465 HIS A 1015 REMARK 465 HIS A 1016 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 869 CG CD CE NZ REMARK 470 GLU A1000 CG CD OE1 OE2 REMARK 470 LYS A1003 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1269 O HOH A 1336 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 916 48.29 -86.74 REMARK 500 THR A 939 -152.65 -124.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1404 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1405 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A1406 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1407 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1408 DISTANCE = 7.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAR A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3YB A 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EW2 RELATED DB: PDB REMARK 900 4EW2 IS THE SAME PROTEIN COMPLEXED WITH 10S-METHYLTHIO-DDATHF REMARK 900 RELATED ID: 4EW3 RELATED DB: PDB REMARK 900 4EW3 IS THE SAME PROTEIN COMPLEXED WITH 10R-METHYLTHIO-DDATHF REMARK 900 RELATED ID: 1RBM RELATED DB: PDB REMARK 900 1RBM IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RBQ RELATED DB: PDB REMARK 900 1RBQ IS THE SAME PROTEIN COMPLEXED WITH 10-(TRIFLUOROACETYL)-5,10- REMARK 900 DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RBY RELATED DB: PDB REMARK 900 1RBY IS THE SAME PROTEIN COMPLEXED WITH 10-(TRIFLUOROACETYL)-5,10- REMARK 900 DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID AND BETA-GAR REMARK 900 RELATED ID: 1RBZ RELATED DB: PDB REMARK 900 1RBZ IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RC0 RELATED DB: PDB REMARK 900 1RC0 IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RC1 RELATED DB: PDB REMARK 900 1RC1 IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1NJS RELATED DB: PDB REMARK 900 1NJS IS THE SAME PROTEIN COMPLEXED WITH A HYDROLYZED FORM OF 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1MEN RELATED DB: PDB REMARK 900 1MEN IS THE SAME PROTEIN COMPLEXED WITH BETA-GAR REMARK 900 RELATED ID: 1MEJ RELATED DB: PDB REMARK 900 1MEJ IS THE SAME PROTEIN IN APO FORM AT PH 8.5 REMARK 900 RELATED ID: 1MEO RELATED DB: PDB REMARK 900 1MEO IS THE SAME PROTEIN IN APO FORM AT PH 4.2 REMARK 900 RELATED ID: 1ZLX RELATED DB: PDB REMARK 900 1ZLX IS THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 1ZLY RELATED DB: PDB REMARK 900 1ZLY IS THE SAME PROTEIN COMPLEXED WITH 4-[(4-{[(2-AMINO-4-OXO-3,4- REMARK 900 DIHYDROQUINAZOLIN- 6-YL)METHYL]AMINO}BENZOYL)AMINO]BUTANOIC ACID REMARK 900 AND 5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE REMARK 900 RELATED ID: 4ZYT RELATED DB: PDB REMARK 900 RELATED ID: 4ZYU RELATED DB: PDB REMARK 900 RELATED ID: 4ZYV RELATED DB: PDB REMARK 900 RELATED ID: 4ZYW RELATED DB: PDB REMARK 900 RELATED ID: 4ZYY RELATED DB: PDB REMARK 900 RELATED ID: 4ZYZ RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ0 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ1 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ2 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ3 RELATED DB: PDB DBREF 4ZYX A 808 1010 UNP P22102 PUR2_HUMAN 808 1010 SEQADV 4ZYX MET A 807 UNP P22102 INITIATING METHIONINE SEQADV 4ZYX HIS A 1011 UNP P22102 EXPRESSION TAG SEQADV 4ZYX HIS A 1012 UNP P22102 EXPRESSION TAG SEQADV 4ZYX HIS A 1013 UNP P22102 EXPRESSION TAG SEQADV 4ZYX HIS A 1014 UNP P22102 EXPRESSION TAG SEQADV 4ZYX HIS A 1015 UNP P22102 EXPRESSION TAG SEQADV 4ZYX HIS A 1016 UNP P22102 EXPRESSION TAG SEQRES 1 A 210 MET ALA ARG VAL ALA VAL LEU ILE SER GLY THR GLY SER SEQRES 2 A 210 ASN LEU GLN ALA LEU ILE ASP SER THR ARG GLU PRO ASN SEQRES 3 A 210 SER SER ALA GLN ILE ASP ILE VAL ILE SER ASN LYS ALA SEQRES 4 A 210 ALA VAL ALA GLY LEU ASP LYS ALA GLU ARG ALA GLY ILE SEQRES 5 A 210 PRO THR ARG VAL ILE ASN HIS LYS LEU TYR LYS ASN ARG SEQRES 6 A 210 VAL GLU PHE ASP SER ALA ILE ASP LEU VAL LEU GLU GLU SEQRES 7 A 210 PHE SER ILE ASP ILE VAL CYS LEU ALA GLY PHE MET ARG SEQRES 8 A 210 ILE LEU SER GLY PRO PHE VAL GLN LYS TRP ASN GLY LYS SEQRES 9 A 210 MET LEU ASN ILE HIS PRO SER LEU LEU PRO SER PHE LYS SEQRES 10 A 210 GLY SER ASN ALA HIS GLU GLN ALA LEU GLU THR GLY VAL SEQRES 11 A 210 THR VAL THR GLY CYS THR VAL HIS PHE VAL ALA GLU ASP SEQRES 12 A 210 VAL ASP ALA GLY GLN ILE ILE LEU GLN GLU ALA VAL PRO SEQRES 13 A 210 VAL LYS ARG GLY ASP THR VAL ALA THR LEU SER GLU ARG SEQRES 14 A 210 VAL LYS LEU ALA GLU HIS LYS ILE PHE PRO ALA ALA LEU SEQRES 15 A 210 GLN LEU VAL ALA SER GLY THR VAL GLN LEU GLY GLU ASN SEQRES 16 A 210 GLY LYS ILE CYS TRP VAL LYS GLU GLU HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS HET GAR A1101 18 HET 3YB A1102 32 HETNAM GAR GLYCINAMIDE RIBONUCLEOTIDE HETNAM 3YB N-({4-[4-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3- HETNAM 2 3YB D]PYRIMIDIN-6-YL)BUTYL]THIOPHEN-2-YL}CARBONYL)-L- HETNAM 3 3YB GLUTAMIC ACID FORMUL 2 GAR C7 H13 N2 O8 P 2- FORMUL 3 3YB C20 H23 N5 O6 S FORMUL 4 HOH *208(H2 O) HELIX 1 AA1 GLY A 818 ARG A 829 1 12 HELIX 2 AA2 VAL A 847 ALA A 856 1 10 HELIX 3 AA3 ASN A 864 TYR A 868 5 5 HELIX 4 AA4 ASN A 870 PHE A 885 1 16 HELIX 5 AA5 SER A 900 TRP A 907 1 8 HELIX 6 AA6 ASN A 926 GLY A 935 1 10 HELIX 7 AA7 THR A 968 SER A 993 1 26 SHEET 1 AA1 7 THR A 860 VAL A 862 0 SHEET 2 AA1 7 GLN A 836 SER A 842 1 N SER A 842 O ARG A 861 SHEET 3 AA1 7 ARG A 809 ILE A 814 1 N VAL A 810 O GLN A 836 SHEET 4 AA1 7 ILE A 889 LEU A 892 1 O CYS A 891 N LEU A 813 SHEET 5 AA1 7 MET A 911 HIS A 915 1 O LEU A 912 N LEU A 892 SHEET 6 AA1 7 VAL A 938 PHE A 945 -1 O THR A 942 N HIS A 915 SHEET 7 AA1 7 ILE A 955 PRO A 962 -1 O VAL A 961 N THR A 939 SHEET 1 AA2 2 VAL A 996 LEU A 998 0 SHEET 2 AA2 2 ILE A1004 TRP A1006 -1 O CYS A1005 N GLN A 997 CISPEP 1 LEU A 919 PRO A 920 0 12.03 SITE 1 AC1 19 THR A 817 GLY A 818 SER A 819 ASN A 820 SITE 2 AC1 19 GLY A 894 ILE A 914 PRO A 916 LYS A 977 SITE 3 AC1 19 GLU A 980 3YB A1102 HOH A1209 HOH A1228 SITE 4 AC1 19 HOH A1245 HOH A1247 HOH A1248 HOH A1251 SITE 5 AC1 19 HOH A1289 HOH A1299 HOH A1304 SITE 1 AC2 17 ARG A 871 PHE A 895 MET A 896 ARG A 897 SITE 2 AC2 17 ILE A 898 LEU A 899 VAL A 904 GLY A 924 SITE 3 AC2 17 HIS A 944 VAL A 946 ALA A 947 GLU A 948 SITE 4 AC2 17 VAL A 950 ASP A 951 GAR A1101 HOH A1238 SITE 5 AC2 17 HOH A1326 CRYST1 75.328 75.328 100.856 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013275 0.007664 0.000000 0.00000 SCALE2 0.000000 0.015329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009915 0.00000