HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-MAY-15 4ZYZ TITLE HUMAN GAR TRANSFORMYLASE IN COMPLEX WITH GAR AND (S)-2-(7-(2-AMINO-4- TITLE 2 OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)HEPTANAMIDO) TITLE 3 PENTANEDIOIC ACID (AGF145) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAR TRANSFORMYLASE DOMAIN; COMPND 5 EC: 2.1.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GART, PGFT, PRGS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GAR TRANSFORMYLASE, ANTIFOLATE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.DEIS,C.E.DANN III REVDAT 5 27-SEP-23 4ZYZ 1 REMARK REVDAT 4 04-DEC-19 4ZYZ 1 REMARK REVDAT 3 20-SEP-17 4ZYZ 1 REMARK REVDAT 2 22-FEB-17 4ZYZ 1 JRNL REMARK REVDAT 1 20-APR-16 4ZYZ 0 JRNL AUTH S.M.DEIS,A.DOSHI,Z.HOU,L.H.MATHERLY,A.GANGJEE,C.E.DANN JRNL TITL STRUCTURAL AND ENZYMATIC ANALYSIS OF TUMOR-TARGETED JRNL TITL 2 ANTIFOLATES THAT INHIBIT GLYCINAMIDE RIBONUCLEOTIDE JRNL TITL 3 FORMYLTRANSFERASE. JRNL REF BIOCHEMISTRY V. 55 4574 2016 JRNL REFN ISSN 1520-4995 JRNL PMID 27439469 JRNL DOI 10.1021/ACS.BIOCHEM.6B00412 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX.REFINE 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 43766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0074 - 3.8451 0.97 3140 156 0.1441 0.1503 REMARK 3 2 3.8451 - 3.0523 1.00 3134 145 0.1656 0.1948 REMARK 3 3 3.0523 - 2.6666 1.00 3070 147 0.1822 0.2323 REMARK 3 4 2.6666 - 2.4228 1.00 3068 150 0.1739 0.2016 REMARK 3 5 2.4228 - 2.2492 1.00 3061 144 0.1639 0.1900 REMARK 3 6 2.2492 - 2.1166 1.00 3063 147 0.1593 0.1573 REMARK 3 7 2.1166 - 2.0106 1.00 3049 148 0.1619 0.1997 REMARK 3 8 2.0106 - 1.9231 1.00 3011 145 0.1622 0.1838 REMARK 3 9 1.9231 - 1.8490 1.00 3029 146 0.1585 0.1899 REMARK 3 10 1.8490 - 1.7852 1.00 3034 146 0.1672 0.1617 REMARK 3 11 1.7852 - 1.7294 1.00 3019 145 0.1703 0.1892 REMARK 3 12 1.7294 - 1.6800 1.00 3019 142 0.1762 0.1956 REMARK 3 13 1.6800 - 1.6357 0.98 2930 144 0.1838 0.2326 REMARK 3 14 1.6357 - 1.5958 0.70 2135 99 0.1907 0.2266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1702 REMARK 3 ANGLE : 1.185 2328 REMARK 3 CHIRALITY : 0.046 270 REMARK 3 PLANARITY : 0.005 307 REMARK 3 DIHEDRAL : 13.626 635 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 808 THROUGH 818 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5021 25.4188 24.5597 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.1580 REMARK 3 T33: 0.1398 T12: -0.0446 REMARK 3 T13: 0.0405 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.8415 L22: 0.4149 REMARK 3 L33: 2.3076 L12: -0.0811 REMARK 3 L13: -0.0666 L23: 0.1859 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.2047 S13: 0.2429 REMARK 3 S21: -0.3544 S22: 0.0025 S23: -0.0741 REMARK 3 S31: -0.2736 S32: 0.0468 S33: 0.0064 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 819 THROUGH 835 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.3802 22.1649 26.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.1462 T22: 0.1075 REMARK 3 T33: 0.1238 T12: 0.0132 REMARK 3 T13: -0.0029 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.8709 L22: 0.7193 REMARK 3 L33: 3.9844 L12: 0.1964 REMARK 3 L13: -1.6298 L23: -0.2795 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.1102 S13: 0.1266 REMARK 3 S21: -0.2221 S22: -0.0401 S23: 0.0611 REMARK 3 S31: -0.2733 S32: -0.3090 S33: 0.0132 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 836 THROUGH 855 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9530 30.6986 20.5639 REMARK 3 T TENSOR REMARK 3 T11: 0.3941 T22: 0.1567 REMARK 3 T33: 0.2417 T12: -0.0448 REMARK 3 T13: 0.0377 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.5732 L22: 0.6136 REMARK 3 L33: 2.4240 L12: 0.5799 REMARK 3 L13: -0.2983 L23: -0.6497 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.2366 S13: 0.5237 REMARK 3 S21: -0.5029 S22: 0.0385 S23: 0.0318 REMARK 3 S31: -0.4436 S32: 0.1468 S33: -0.0324 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 856 THROUGH 884 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7404 30.7425 25.5445 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.3220 REMARK 3 T33: 0.4024 T12: -0.2108 REMARK 3 T13: 0.1506 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 1.1010 L22: 0.6241 REMARK 3 L33: 0.5923 L12: -0.4038 REMARK 3 L13: 0.4065 L23: 0.1860 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: 0.2419 S13: 0.5062 REMARK 3 S21: -0.3802 S22: 0.0878 S23: -0.3937 REMARK 3 S31: -0.4390 S32: 0.6041 S33: 0.0009 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 885 THROUGH 906 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5761 22.3226 28.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.2470 REMARK 3 T33: 0.2117 T12: -0.0790 REMARK 3 T13: 0.0483 T23: -0.0785 REMARK 3 L TENSOR REMARK 3 L11: 0.9321 L22: 0.5298 REMARK 3 L33: 0.9689 L12: -0.0620 REMARK 3 L13: 0.1380 L23: 0.3539 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.0298 S13: 0.1985 REMARK 3 S21: -0.1663 S22: 0.1086 S23: -0.3659 REMARK 3 S31: -0.1999 S32: 0.4602 S33: -0.0954 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 907 THROUGH 954 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3458 9.7498 19.9059 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.1398 REMARK 3 T33: 0.1251 T12: -0.0194 REMARK 3 T13: 0.0025 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.5470 L22: 0.6181 REMARK 3 L33: 1.0899 L12: -0.1308 REMARK 3 L13: -0.1088 L23: 0.5399 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.1078 S13: 0.0844 REMARK 3 S21: 0.0013 S22: 0.0840 S23: -0.1657 REMARK 3 S31: -0.0484 S32: 0.2563 S33: -0.0814 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 955 THROUGH 968 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2763 4.7971 11.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.0942 REMARK 3 T33: 0.0855 T12: -0.0010 REMARK 3 T13: 0.0023 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.5848 L22: 0.4381 REMARK 3 L33: 1.9892 L12: 0.0345 REMARK 3 L13: -0.2031 L23: -0.1997 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: 0.0166 S13: 0.0461 REMARK 3 S21: -0.0872 S22: 0.0448 S23: -0.0179 REMARK 3 S31: 0.0897 S32: -0.1620 S33: 0.0070 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 969 THROUGH 992 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3036 13.3895 18.4671 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.0862 REMARK 3 T33: 0.1049 T12: -0.0070 REMARK 3 T13: 0.0112 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.3848 L22: 0.3379 REMARK 3 L33: 2.0225 L12: -0.0614 REMARK 3 L13: -0.2210 L23: 0.4154 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.0081 S13: 0.1364 REMARK 3 S21: 0.0244 S22: 0.0366 S23: -0.0290 REMARK 3 S31: -0.0791 S32: -0.0718 S33: -0.0382 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 993 THROUGH 1007 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5207 7.4034 37.9112 REMARK 3 T TENSOR REMARK 3 T11: 0.2756 T22: 0.2975 REMARK 3 T33: 0.2149 T12: 0.0637 REMARK 3 T13: -0.0081 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.5070 L22: 3.8791 REMARK 3 L33: 1.7433 L12: -1.3936 REMARK 3 L13: -0.2557 L23: 0.2323 REMARK 3 S TENSOR REMARK 3 S11: -0.1783 S12: -0.4257 S13: -0.2583 REMARK 3 S21: 0.4667 S22: 0.0016 S23: -0.3336 REMARK 3 S31: 0.4300 S32: 0.4294 S33: 0.1073 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0001 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4X77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % PEG4000, 2 % PEG400, 0.33 M NACL, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.40733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.70367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.70367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.40733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 807 REMARK 465 LYS A 1008 REMARK 465 GLU A 1009 REMARK 465 GLU A 1010 REMARK 465 HIS A 1011 REMARK 465 HIS A 1012 REMARK 465 HIS A 1013 REMARK 465 HIS A 1014 REMARK 465 HIS A 1015 REMARK 465 HIS A 1016 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 869 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 916 49.84 -86.93 REMARK 500 THR A 939 -152.41 -123.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1399 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1400 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A1401 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1402 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A1403 DISTANCE = 6.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAR A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3YD A 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EW2 RELATED DB: PDB REMARK 900 4EW2 IS THE SAME PROTEIN COMPLEXED WITH 10S-METHYLTHIO-DDATHF REMARK 900 RELATED ID: 4EW3 RELATED DB: PDB REMARK 900 4EW3 IS THE SAME PROTEIN COMPLEXED WITH 10R-METHYLTHIO-DDATHF REMARK 900 RELATED ID: 1RBM RELATED DB: PDB REMARK 900 1RBM IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RBQ RELATED DB: PDB REMARK 900 1RBQ IS THE SAME PROTEIN COMPLEXED WITH 10-(TRIFLUOROACETYL)-5,10- REMARK 900 DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RBY RELATED DB: PDB REMARK 900 1RBY IS THE SAME PROTEIN COMPLEXED WITH 10-(TRIFLUOROACETYL)-5,10- REMARK 900 DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID AND BETA-GAR REMARK 900 RELATED ID: 1RBZ RELATED DB: PDB REMARK 900 1RBZ IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RC0 RELATED DB: PDB REMARK 900 1RC0 IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RC1 RELATED DB: PDB REMARK 900 1RC1 IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1NJS RELATED DB: PDB REMARK 900 1NJS IS THE SAME PROTEIN COMPLEXED WITH A HYDROLYZED FORM OF 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1MEN RELATED DB: PDB REMARK 900 1MEN IS THE SAME PROTEIN COMPLEXED WITH BETA-GAR REMARK 900 RELATED ID: 1MEJ RELATED DB: PDB REMARK 900 1MEJ IS THE SAME PROTEIN IN APO FORM AT PH 8.5 REMARK 900 RELATED ID: 1MEO RELATED DB: PDB REMARK 900 1MEO IS THE SAME PROTEIN IN APO FORM AT PH 4.2 REMARK 900 RELATED ID: 1ZLX RELATED DB: PDB REMARK 900 1ZLX IS THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 1ZLY RELATED DB: PDB REMARK 900 1ZLY IS THE SAME PROTEIN COMPLEXED WITH 4-[(4-{[(2-AMINO-4-OXO-3,4- REMARK 900 DIHYDROQUINAZOLIN- 6-YL)METHYL]AMINO}BENZOYL)AMINO]BUTANOIC ACID REMARK 900 AND 5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE REMARK 900 RELATED ID: 4ZYT RELATED DB: PDB REMARK 900 RELATED ID: 4ZYU RELATED DB: PDB REMARK 900 RELATED ID: 4ZYV RELATED DB: PDB REMARK 900 RELATED ID: 4ZYY RELATED DB: PDB REMARK 900 RELATED ID: 4ZYW RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ0 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ1 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ2 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ3 RELATED DB: PDB DBREF 4ZYZ A 808 1010 UNP P22102 PUR2_HUMAN 808 1010 SEQADV 4ZYZ MET A 807 UNP P22102 INITIATING METHIONINE SEQADV 4ZYZ HIS A 1011 UNP P22102 EXPRESSION TAG SEQADV 4ZYZ HIS A 1012 UNP P22102 EXPRESSION TAG SEQADV 4ZYZ HIS A 1013 UNP P22102 EXPRESSION TAG SEQADV 4ZYZ HIS A 1014 UNP P22102 EXPRESSION TAG SEQADV 4ZYZ HIS A 1015 UNP P22102 EXPRESSION TAG SEQADV 4ZYZ HIS A 1016 UNP P22102 EXPRESSION TAG SEQRES 1 A 210 MET ALA ARG VAL ALA VAL LEU ILE SER GLY THR GLY SER SEQRES 2 A 210 ASN LEU GLN ALA LEU ILE ASP SER THR ARG GLU PRO ASN SEQRES 3 A 210 SER SER ALA GLN ILE ASP ILE VAL ILE SER ASN LYS ALA SEQRES 4 A 210 ALA VAL ALA GLY LEU ASP LYS ALA GLU ARG ALA GLY ILE SEQRES 5 A 210 PRO THR ARG VAL ILE ASN HIS LYS LEU TYR LYS ASN ARG SEQRES 6 A 210 VAL GLU PHE ASP SER ALA ILE ASP LEU VAL LEU GLU GLU SEQRES 7 A 210 PHE SER ILE ASP ILE VAL CYS LEU ALA GLY PHE MET ARG SEQRES 8 A 210 ILE LEU SER GLY PRO PHE VAL GLN LYS TRP ASN GLY LYS SEQRES 9 A 210 MET LEU ASN ILE HIS PRO SER LEU LEU PRO SER PHE LYS SEQRES 10 A 210 GLY SER ASN ALA HIS GLU GLN ALA LEU GLU THR GLY VAL SEQRES 11 A 210 THR VAL THR GLY CYS THR VAL HIS PHE VAL ALA GLU ASP SEQRES 12 A 210 VAL ASP ALA GLY GLN ILE ILE LEU GLN GLU ALA VAL PRO SEQRES 13 A 210 VAL LYS ARG GLY ASP THR VAL ALA THR LEU SER GLU ARG SEQRES 14 A 210 VAL LYS LEU ALA GLU HIS LYS ILE PHE PRO ALA ALA LEU SEQRES 15 A 210 GLN LEU VAL ALA SER GLY THR VAL GLN LEU GLY GLU ASN SEQRES 16 A 210 GLY LYS ILE CYS TRP VAL LYS GLU GLU HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS HET GAR A1101 18 HET 3YD A1102 29 HETNAM GAR GLYCINAMIDE RIBONUCLEOTIDE HETNAM 3YD (S)-2-(7-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3- HETNAM 2 3YD D]PYRIMIDIN-6-YL)HEPTANAMIDO)PENTANEDIOIC ACID FORMUL 2 GAR C7 H13 N2 O8 P 2- FORMUL 3 3YD C18 H25 N5 O6 FORMUL 4 HOH *203(H2 O) HELIX 1 AA1 GLY A 818 ARG A 829 1 12 HELIX 2 AA2 VAL A 847 ALA A 856 1 10 HELIX 3 AA3 ASN A 864 TYR A 868 5 5 HELIX 4 AA4 ASN A 870 PHE A 885 1 16 HELIX 5 AA5 SER A 900 TRP A 907 1 8 HELIX 6 AA6 ASN A 926 GLY A 935 1 10 HELIX 7 AA7 THR A 968 SER A 993 1 26 SHEET 1 AA1 7 THR A 860 VAL A 862 0 SHEET 2 AA1 7 GLN A 836 SER A 842 1 N SER A 842 O ARG A 861 SHEET 3 AA1 7 ARG A 809 ILE A 814 1 N VAL A 810 O GLN A 836 SHEET 4 AA1 7 ILE A 889 LEU A 892 1 O CYS A 891 N LEU A 813 SHEET 5 AA1 7 MET A 911 HIS A 915 1 O LEU A 912 N LEU A 892 SHEET 6 AA1 7 VAL A 938 PHE A 945 -1 O THR A 942 N HIS A 915 SHEET 7 AA1 7 ILE A 955 PRO A 962 -1 O VAL A 961 N THR A 939 SHEET 1 AA2 2 VAL A 996 LEU A 998 0 SHEET 2 AA2 2 ILE A1004 TRP A1006 -1 O CYS A1005 N GLN A 997 CISPEP 1 LEU A 919 PRO A 920 0 11.49 SITE 1 AC1 16 THR A 817 GLY A 818 SER A 819 ASN A 820 SITE 2 AC1 16 GLY A 894 PRO A 916 LYS A 977 GLU A 980 SITE 3 AC1 16 HOH A1216 HOH A1231 HOH A1235 HOH A1238 SITE 4 AC1 16 HOH A1239 HOH A1289 HOH A1306 HOH A1329 SITE 1 AC2 16 ARG A 871 PHE A 895 MET A 896 ARG A 897 SITE 2 AC2 16 ILE A 898 LEU A 899 VAL A 904 ASN A 913 SITE 3 AC2 16 HIS A 944 VAL A 946 ALA A 947 GLU A 948 SITE 4 AC2 16 VAL A 950 ASP A 951 HOH A1236 HOH A1251 CRYST1 75.501 75.501 101.111 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013245 0.007647 0.000000 0.00000 SCALE2 0.000000 0.015294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009890 0.00000