data_5A0B
#
_entry.id 5A0B
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5A0B pdb_00005a0b 10.2210/pdb5a0b/pdb
PDBE EBI-63628 ? ?
WWPDB D_1290063628 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2015-08-19
2 'Structure model' 1 1 2017-03-22
3 'Structure model' 1 2 2017-06-28
4 'Structure model' 2 0 2020-07-29
5 'Structure model' 2 1 2024-11-06
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' Other
7 4 'Structure model' 'Structure summary'
8 5 'Structure model' 'Data collection'
9 5 'Structure model' 'Database references'
10 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' diffrn_source
2 4 'Structure model' atom_site
3 4 'Structure model' atom_site_anisotrop
4 4 'Structure model' chem_comp
5 4 'Structure model' entity
6 4 'Structure model' pdbx_branch_scheme
7 4 'Structure model' pdbx_chem_comp_identifier
8 4 'Structure model' pdbx_database_status
9 4 'Structure model' pdbx_entity_branch
10 4 'Structure model' pdbx_entity_branch_descriptor
11 4 'Structure model' pdbx_entity_branch_link
12 4 'Structure model' pdbx_entity_branch_list
13 4 'Structure model' pdbx_entity_nonpoly
14 4 'Structure model' pdbx_nonpoly_scheme
15 4 'Structure model' pdbx_struct_assembly_gen
16 4 'Structure model' struct_asym
17 4 'Structure model' struct_conn
18 4 'Structure model' struct_site
19 4 'Structure model' struct_site_gen
20 5 'Structure model' chem_comp
21 5 'Structure model' chem_comp_atom
22 5 'Structure model' chem_comp_bond
23 5 'Structure model' database_2
24 5 'Structure model' pdbx_entry_details
25 5 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_diffrn_source.type'
2 4 'Structure model' '_atom_site.B_iso_or_equiv'
3 4 'Structure model' '_atom_site.Cartn_x'
4 4 'Structure model' '_atom_site.Cartn_y'
5 4 'Structure model' '_atom_site.Cartn_z'
6 4 'Structure model' '_atom_site.auth_asym_id'
7 4 'Structure model' '_atom_site.auth_atom_id'
8 4 'Structure model' '_atom_site.auth_comp_id'
9 4 'Structure model' '_atom_site.auth_seq_id'
10 4 'Structure model' '_atom_site.label_asym_id'
11 4 'Structure model' '_atom_site.label_atom_id'
12 4 'Structure model' '_atom_site.label_comp_id'
13 4 'Structure model' '_atom_site.label_entity_id'
14 4 'Structure model' '_atom_site.type_symbol'
15 4 'Structure model' '_atom_site_anisotrop.U[1][1]'
16 4 'Structure model' '_atom_site_anisotrop.U[1][2]'
17 4 'Structure model' '_atom_site_anisotrop.U[1][3]'
18 4 'Structure model' '_atom_site_anisotrop.U[2][2]'
19 4 'Structure model' '_atom_site_anisotrop.U[2][3]'
20 4 'Structure model' '_atom_site_anisotrop.U[3][3]'
21 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id'
22 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id'
23 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id'
24 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id'
25 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id'
26 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id'
27 4 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id'
28 4 'Structure model' '_atom_site_anisotrop.type_symbol'
29 4 'Structure model' '_chem_comp.name'
30 4 'Structure model' '_chem_comp.type'
31 4 'Structure model' '_entity.formula_weight'
32 4 'Structure model' '_entity.pdbx_description'
33 4 'Structure model' '_entity.pdbx_number_of_molecules'
34 4 'Structure model' '_entity.type'
35 4 'Structure model' '_pdbx_database_status.status_code_sf'
36 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
37 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
38 4 'Structure model' '_struct_conn.pdbx_role'
39 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
40 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
41 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
42 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
43 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
44 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
45 5 'Structure model' '_chem_comp.pdbx_synonyms'
46 5 'Structure model' '_database_2.pdbx_DOI'
47 5 'Structure model' '_database_2.pdbx_database_accession'
#
_database_PDB_caveat.id 1
_database_PDB_caveat.text 'AG A 403 HAS LONG BOND BETWEEN C1 AND C4 OF NAG A401'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 5A0B
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2015-04-17
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 5A09 unspecified 'CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR'
PDB 5A0A unspecified 'CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR'
PDB 5A0C unspecified 'CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A DIHYDROPYRIMIDONE INHIBITOR'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'vonNussbaum, F.' 1
'Li, V.M.-J.' 2
'Allerheiligen, S.' 3
'Anlauf, S.' 4
'Baerfacker, L.' 5
'Bechem, M.' 6
'Delbeck, M.' 7
'Fitzgerald, M.F.' 8
'Gerisch, M.' 9
'Gielen-Haertwig, H.' 10
'Haning, H.' 11
'Karthaus, D.' 12
'Lang, D.' 13
'Lustig, K.' 14
'Meibom, D.' 15
'Mittendorf, J.' 16
'Rosentreter, U.' 17
'Schaefer, M.' 18
'Schaefer, S.' 19
'Schamberger, J.' 20
'Telan, L.A.' 21
'Tersteegen, A.' 22
#
_citation.id primary
_citation.title
;Freezing the Bioactive Conformation to Boost Potency: The Identification of BAY 85-8501, a Selective and Potent Inhibitor of Human Neutrophil Elastase for Pulmonary Diseases.
;
_citation.journal_abbrev ChemMedChem
_citation.journal_volume 10
_citation.page_first 1163
_citation.page_last 1173
_citation.year 2015
_citation.journal_id_ASTM ?
_citation.country DE
_citation.journal_id_ISSN 1860-7187
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 26083237
_citation.pdbx_database_id_DOI 10.1002/cmdc.201500131
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'von Nussbaum, F.' 1 ?
primary 'Li, V.M.' 2 ?
primary 'Allerheiligen, S.' 3 ?
primary 'Anlauf, S.' 4 ?
primary 'Barfacker, L.' 5 ?
primary 'Bechem, M.' 6 ?
primary 'Delbeck, M.' 7 ?
primary 'Fitzgerald, M.F.' 8 ?
primary 'Gerisch, M.' 9 ?
primary 'Gielen-Haertwig, H.' 10 ?
primary 'Haning, H.' 11 ?
primary 'Karthaus, D.' 12 ?
primary 'Lang, D.' 13 ?
primary 'Lustig, K.' 14 ?
primary 'Meibom, D.' 15 ?
primary 'Mittendorf, J.' 16 ?
primary 'Rosentreter, U.' 17 ?
primary 'Schafer, M.' 18 ?
primary 'Schafer, S.' 19 ?
primary 'Schamberger, J.' 20 ?
primary 'Telan, L.A.' 21 ?
primary 'Tersteegen, A.' 22 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat 'NEUTROPHIL ELASTASE' 23318.982 1 3.4.21.37 ? ? ?
2 branched man 'alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose' 367.349 2 ? ? ? ?
3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ?
4 non-polymer syn
;(4R)-4-(4-cyanophenyl)-6-methyl-2-oxidanylidene-3-[2-oxidanylidene-2-(4-propan-2-ylpiperazin-1-yl)ethyl]-1-[3-(trifluoromethyl)phenyl]-4H-pyrimidine-5-carbonitrile
;
550.575 1 ? ? ? ?
5 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ?
6 water nat water 18.015 71 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
;BONE MARROW SERINE PROTEASE, ELASTASE-2, HUMAN LEUKOCYTE EL ASTASE, HLE, MEDULLASIN, PMN ELASTASE, ELASTASE, HLE, MEDULIASIN, PMN ELASTASE
;
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY
DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL
VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ
;
_entity_poly.pdbx_seq_one_letter_code_can
;IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY
DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL
VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG
4
;(4R)-4-(4-cyanophenyl)-6-methyl-2-oxidanylidene-3-[2-oxidanylidene-2-(4-propan-2-ylpiperazin-1-yl)ethyl]-1-[3-(trifluoromethyl)phenyl]-4H-pyrimidine-5-carbonitrile
;
JJX
5 'DIMETHYL SULFOXIDE' DMS
6 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ILE n
1 2 VAL n
1 3 GLY n
1 4 GLY n
1 5 ARG n
1 6 ARG n
1 7 ALA n
1 8 ARG n
1 9 PRO n
1 10 HIS n
1 11 ALA n
1 12 TRP n
1 13 PRO n
1 14 PHE n
1 15 MET n
1 16 VAL n
1 17 SER n
1 18 LEU n
1 19 GLN n
1 20 LEU n
1 21 ARG n
1 22 GLY n
1 23 GLY n
1 24 HIS n
1 25 PHE n
1 26 CYS n
1 27 GLY n
1 28 ALA n
1 29 THR n
1 30 LEU n
1 31 ILE n
1 32 ALA n
1 33 PRO n
1 34 ASN n
1 35 PHE n
1 36 VAL n
1 37 MET n
1 38 SER n
1 39 ALA n
1 40 ALA n
1 41 HIS n
1 42 CYS n
1 43 VAL n
1 44 ALA n
1 45 ASN n
1 46 VAL n
1 47 ASN n
1 48 VAL n
1 49 ARG n
1 50 ALA n
1 51 VAL n
1 52 ARG n
1 53 VAL n
1 54 VAL n
1 55 LEU n
1 56 GLY n
1 57 ALA n
1 58 HIS n
1 59 ASN n
1 60 LEU n
1 61 SER n
1 62 ARG n
1 63 ARG n
1 64 GLU n
1 65 PRO n
1 66 THR n
1 67 ARG n
1 68 GLN n
1 69 VAL n
1 70 PHE n
1 71 ALA n
1 72 VAL n
1 73 GLN n
1 74 ARG n
1 75 ILE n
1 76 PHE n
1 77 GLU n
1 78 ASN n
1 79 GLY n
1 80 TYR n
1 81 ASP n
1 82 PRO n
1 83 VAL n
1 84 ASN n
1 85 LEU n
1 86 LEU n
1 87 ASN n
1 88 ASP n
1 89 ILE n
1 90 VAL n
1 91 ILE n
1 92 LEU n
1 93 GLN n
1 94 LEU n
1 95 ASN n
1 96 GLY n
1 97 SER n
1 98 ALA n
1 99 THR n
1 100 ILE n
1 101 ASN n
1 102 ALA n
1 103 ASN n
1 104 VAL n
1 105 GLN n
1 106 VAL n
1 107 ALA n
1 108 GLN n
1 109 LEU n
1 110 PRO n
1 111 ALA n
1 112 GLN n
1 113 GLY n
1 114 ARG n
1 115 ARG n
1 116 LEU n
1 117 GLY n
1 118 ASN n
1 119 GLY n
1 120 VAL n
1 121 GLN n
1 122 CYS n
1 123 LEU n
1 124 ALA n
1 125 MET n
1 126 GLY n
1 127 TRP n
1 128 GLY n
1 129 LEU n
1 130 LEU n
1 131 GLY n
1 132 ARG n
1 133 ASN n
1 134 ARG n
1 135 GLY n
1 136 ILE n
1 137 ALA n
1 138 SER n
1 139 VAL n
1 140 LEU n
1 141 GLN n
1 142 GLU n
1 143 LEU n
1 144 ASN n
1 145 VAL n
1 146 THR n
1 147 VAL n
1 148 VAL n
1 149 THR n
1 150 SER n
1 151 LEU n
1 152 CYS n
1 153 ARG n
1 154 ARG n
1 155 SER n
1 156 ASN n
1 157 VAL n
1 158 CYS n
1 159 THR n
1 160 LEU n
1 161 VAL n
1 162 ARG n
1 163 GLY n
1 164 ARG n
1 165 GLN n
1 166 ALA n
1 167 GLY n
1 168 VAL n
1 169 CYS n
1 170 PHE n
1 171 GLY n
1 172 ASP n
1 173 SER n
1 174 GLY n
1 175 SER n
1 176 PRO n
1 177 LEU n
1 178 VAL n
1 179 CYS n
1 180 ASN n
1 181 GLY n
1 182 LEU n
1 183 ILE n
1 184 HIS n
1 185 GLY n
1 186 ILE n
1 187 ALA n
1 188 SER n
1 189 PHE n
1 190 VAL n
1 191 ARG n
1 192 GLY n
1 193 GLY n
1 194 CYS n
1 195 ALA n
1 196 SER n
1 197 GLY n
1 198 LEU n
1 199 TYR n
1 200 PRO n
1 201 ASP n
1 202 ALA n
1 203 PHE n
1 204 ALA n
1 205 PRO n
1 206 VAL n
1 207 ALA n
1 208 GLN n
1 209 PHE n
1 210 VAL n
1 211 ASN n
1 212 TRP n
1 213 ILE n
1 214 ASP n
1 215 SER n
1 216 ILE n
1 217 ILE n
1 218 GLN n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name HUMAN
_entity_src_nat.pdbx_organism_scientific 'HOMO SAPIENS'
_entity_src_nat.pdbx_ncbi_taxonomy_id 9606
_entity_src_nat.genus ?
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 LFucpa1-6DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2/a6-b1' WURCS PDB2Glycan 1.1.0
3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(6+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 FUC
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 NAG
_pdbx_entity_branch_link.atom_id_2 O6
_pdbx_entity_branch_link.leaving_atom_id_2 HO6
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133
FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose'
'C6 H12 O5' 164.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
JJX non-polymer .
;(4R)-4-(4-cyanophenyl)-6-methyl-2-oxidanylidene-3-[2-oxidanylidene-2-(4-propan-2-ylpiperazin-1-yl)ethyl]-1-[3-(trifluoromethyl)phenyl]-4H-pyrimidine-5-carbonitrile
;
? 'C29 H29 F3 N6 O2' 550.575
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa
FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose
FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp
FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ILE 1 16 16 ILE ILE A . n
A 1 2 VAL 2 17 17 VAL VAL A . n
A 1 3 GLY 3 18 18 GLY GLY A . n
A 1 4 GLY 4 19 19 GLY GLY A . n
A 1 5 ARG 5 20 20 ARG ARG A . n
A 1 6 ARG 6 21 21 ARG ARG A . n
A 1 7 ALA 7 22 22 ALA ALA A . n
A 1 8 ARG 8 23 23 ARG ARG A . n
A 1 9 PRO 9 24 24 PRO PRO A . n
A 1 10 HIS 10 25 25 HIS HIS A . n
A 1 11 ALA 11 26 26 ALA ALA A . n
A 1 12 TRP 12 27 27 TRP TRP A . n
A 1 13 PRO 13 28 28 PRO PRO A . n
A 1 14 PHE 14 29 29 PHE PHE A . n
A 1 15 MET 15 30 30 MET MET A . n
A 1 16 VAL 16 31 31 VAL VAL A . n
A 1 17 SER 17 32 32 SER SER A . n
A 1 18 LEU 18 33 33 LEU LEU A . n
A 1 19 GLN 19 34 34 GLN GLN A . n
A 1 20 LEU 20 35 35 LEU LEU A . n
A 1 21 ARG 21 36 36 ARG ARG A . n
A 1 22 GLY 22 38 38 GLY GLY A . n
A 1 23 GLY 23 39 39 GLY GLY A . n
A 1 24 HIS 24 40 40 HIS HIS A . n
A 1 25 PHE 25 41 41 PHE PHE A . n
A 1 26 CYS 26 42 42 CYS CYS A . n
A 1 27 GLY 27 43 43 GLY GLY A . n
A 1 28 ALA 28 44 44 ALA ALA A . n
A 1 29 THR 29 45 45 THR THR A . n
A 1 30 LEU 30 46 46 LEU LEU A . n
A 1 31 ILE 31 47 47 ILE ILE A . n
A 1 32 ALA 32 48 48 ALA ALA A . n
A 1 33 PRO 33 49 49 PRO PRO A . n
A 1 34 ASN 34 50 50 ASN ASN A . n
A 1 35 PHE 35 51 51 PHE PHE A . n
A 1 36 VAL 36 52 52 VAL VAL A . n
A 1 37 MET 37 53 53 MET MET A . n
A 1 38 SER 38 54 54 SER SER A . n
A 1 39 ALA 39 55 55 ALA ALA A . n
A 1 40 ALA 40 56 56 ALA ALA A . n
A 1 41 HIS 41 57 57 HIS HIS A . n
A 1 42 CYS 42 58 58 CYS CYS A . n
A 1 43 VAL 43 59 59 VAL VAL A . n
A 1 44 ALA 44 60 60 ALA ALA A . n
A 1 45 ASN 45 61 61 ASN ASN A . n
A 1 46 VAL 46 62 62 VAL VAL A . n
A 1 47 ASN 47 63 63 ASN ASN A . n
A 1 48 VAL 48 63 63 VAL VAL A A n
A 1 49 ARG 49 63 63 ARG ARG A B n
A 1 50 ALA 50 63 63 ALA ALA A C n
A 1 51 VAL 51 64 64 VAL VAL A . n
A 1 52 ARG 52 65 65 ARG ARG A . n
A 1 53 VAL 53 66 66 VAL VAL A . n
A 1 54 VAL 54 67 67 VAL VAL A . n
A 1 55 LEU 55 68 68 LEU LEU A . n
A 1 56 GLY 56 69 69 GLY GLY A . n
A 1 57 ALA 57 70 70 ALA ALA A . n
A 1 58 HIS 58 71 71 HIS HIS A . n
A 1 59 ASN 59 72 72 ASN ASN A . n
A 1 60 LEU 60 73 73 LEU LEU A . n
A 1 61 SER 61 74 74 SER SER A . n
A 1 62 ARG 62 75 75 ARG ARG A . n
A 1 63 ARG 63 76 76 ARG ARG A . n
A 1 64 GLU 64 77 77 GLU GLU A . n
A 1 65 PRO 65 78 78 PRO PRO A . n
A 1 66 THR 66 79 79 THR THR A . n
A 1 67 ARG 67 80 80 ARG ARG A . n
A 1 68 GLN 68 81 81 GLN GLN A . n
A 1 69 VAL 69 82 82 VAL VAL A . n
A 1 70 PHE 70 83 83 PHE PHE A . n
A 1 71 ALA 71 84 84 ALA ALA A . n
A 1 72 VAL 72 85 85 VAL VAL A . n
A 1 73 GLN 73 86 86 GLN GLN A . n
A 1 74 ARG 74 87 87 ARG ARG A . n
A 1 75 ILE 75 88 88 ILE ILE A . n
A 1 76 PHE 76 89 89 PHE PHE A . n
A 1 77 GLU 77 90 90 GLU GLU A . n
A 1 78 ASN 78 92 92 ASN ASN A . n
A 1 79 GLY 79 93 93 GLY GLY A . n
A 1 80 TYR 80 94 94 TYR TYR A . n
A 1 81 ASP 81 95 95 ASP ASP A . n
A 1 82 PRO 82 96 96 PRO PRO A . n
A 1 83 VAL 83 97 97 VAL VAL A . n
A 1 84 ASN 84 98 98 ASN ASN A . n
A 1 85 LEU 85 99 99 LEU LEU A . n
A 1 86 LEU 86 100 100 LEU LEU A . n
A 1 87 ASN 87 101 101 ASN ASN A . n
A 1 88 ASP 88 102 102 ASP ASP A . n
A 1 89 ILE 89 103 103 ILE ILE A . n
A 1 90 VAL 90 104 104 VAL VAL A . n
A 1 91 ILE 91 105 105 ILE ILE A . n
A 1 92 LEU 92 106 106 LEU LEU A . n
A 1 93 GLN 93 107 107 GLN GLN A . n
A 1 94 LEU 94 108 108 LEU LEU A . n
A 1 95 ASN 95 109 109 ASN ASN A . n
A 1 96 GLY 96 110 110 GLY GLY A . n
A 1 97 SER 97 111 111 SER SER A . n
A 1 98 ALA 98 112 112 ALA ALA A . n
A 1 99 THR 99 113 113 THR THR A . n
A 1 100 ILE 100 114 114 ILE ILE A . n
A 1 101 ASN 101 115 115 ASN ASN A . n
A 1 102 ALA 102 116 116 ALA ALA A . n
A 1 103 ASN 103 117 117 ASN ASN A . n
A 1 104 VAL 104 118 118 VAL VAL A . n
A 1 105 GLN 105 119 119 GLN GLN A . n
A 1 106 VAL 106 120 120 VAL VAL A . n
A 1 107 ALA 107 121 121 ALA ALA A . n
A 1 108 GLN 108 122 122 GLN GLN A . n
A 1 109 LEU 109 123 123 LEU LEU A . n
A 1 110 PRO 110 124 124 PRO PRO A . n
A 1 111 ALA 111 125 125 ALA ALA A . n
A 1 112 GLN 112 126 126 GLN GLN A . n
A 1 113 GLY 113 127 127 GLY GLY A . n
A 1 114 ARG 114 128 128 ARG ARG A . n
A 1 115 ARG 115 129 129 ARG ARG A . n
A 1 116 LEU 116 130 130 LEU LEU A . n
A 1 117 GLY 117 131 131 GLY GLY A . n
A 1 118 ASN 118 132 132 ASN ASN A . n
A 1 119 GLY 119 133 133 GLY GLY A . n
A 1 120 VAL 120 134 134 VAL VAL A . n
A 1 121 GLN 121 135 135 GLN GLN A . n
A 1 122 CYS 122 136 136 CYS CYS A . n
A 1 123 LEU 123 137 137 LEU LEU A . n
A 1 124 ALA 124 138 138 ALA ALA A . n
A 1 125 MET 125 139 139 MET MET A . n
A 1 126 GLY 126 140 140 GLY GLY A . n
A 1 127 TRP 127 141 141 TRP TRP A . n
A 1 128 GLY 128 142 142 GLY GLY A . n
A 1 129 LEU 129 143 143 LEU LEU A . n
A 1 130 LEU 130 144 144 LEU LEU A . n
A 1 131 GLY 131 145 145 GLY GLY A . n
A 1 132 ARG 132 146 ? ? ? A . n
A 1 133 ASN 133 147 ? ? ? A . n
A 1 134 ARG 134 148 ? ? ? A . n
A 1 135 GLY 135 150 150 GLY GLY A . n
A 1 136 ILE 136 151 151 ILE ILE A . n
A 1 137 ALA 137 152 152 ALA ALA A . n
A 1 138 SER 138 153 153 SER SER A . n
A 1 139 VAL 139 154 154 VAL VAL A . n
A 1 140 LEU 140 155 155 LEU LEU A . n
A 1 141 GLN 141 156 156 GLN GLN A . n
A 1 142 GLU 142 157 157 GLU GLU A . n
A 1 143 LEU 143 158 158 LEU LEU A . n
A 1 144 ASN 144 159 159 ASN ASN A . n
A 1 145 VAL 145 160 160 VAL VAL A . n
A 1 146 THR 146 161 161 THR THR A . n
A 1 147 VAL 147 162 162 VAL VAL A . n
A 1 148 VAL 148 163 163 VAL VAL A . n
A 1 149 THR 149 164 164 THR THR A . n
A 1 150 SER 150 165 165 SER SER A . n
A 1 151 LEU 151 166 166 LEU LEU A . n
A 1 152 CYS 152 168 168 CYS CYS A . n
A 1 153 ARG 153 177 177 ARG ARG A . n
A 1 154 ARG 154 178 178 ARG ARG A . n
A 1 155 SER 155 179 179 SER SER A . n
A 1 156 ASN 156 180 180 ASN ASN A . n
A 1 157 VAL 157 181 181 VAL VAL A . n
A 1 158 CYS 158 182 182 CYS CYS A . n
A 1 159 THR 159 183 183 THR THR A . n
A 1 160 LEU 160 184 184 LEU LEU A . n
A 1 161 VAL 161 185 185 VAL VAL A . n
A 1 162 ARG 162 186 186 ARG ARG A . n
A 1 163 GLY 163 186 186 GLY GLY A A n
A 1 164 ARG 164 186 186 ARG ARG A B n
A 1 165 GLN 165 187 187 GLN GLN A . n
A 1 166 ALA 166 188 188 ALA ALA A . n
A 1 167 GLY 167 189 189 GLY GLY A . n
A 1 168 VAL 168 190 190 VAL VAL A . n
A 1 169 CYS 169 191 191 CYS CYS A . n
A 1 170 PHE 170 192 192 PHE PHE A . n
A 1 171 GLY 171 193 193 GLY GLY A . n
A 1 172 ASP 172 194 194 ASP ASP A . n
A 1 173 SER 173 195 195 SER SER A . n
A 1 174 GLY 174 196 196 GLY GLY A . n
A 1 175 SER 175 197 197 SER SER A . n
A 1 176 PRO 176 198 198 PRO PRO A . n
A 1 177 LEU 177 199 199 LEU LEU A . n
A 1 178 VAL 178 200 200 VAL VAL A . n
A 1 179 CYS 179 201 201 CYS CYS A . n
A 1 180 ASN 180 202 202 ASN ASN A . n
A 1 181 GLY 181 207 207 GLY GLY A . n
A 1 182 LEU 182 208 208 LEU LEU A . n
A 1 183 ILE 183 209 209 ILE ILE A . n
A 1 184 HIS 184 210 210 HIS HIS A . n
A 1 185 GLY 185 211 211 GLY GLY A . n
A 1 186 ILE 186 212 212 ILE ILE A . n
A 1 187 ALA 187 213 213 ALA ALA A . n
A 1 188 SER 188 214 214 SER SER A . n
A 1 189 PHE 189 215 215 PHE PHE A . n
A 1 190 VAL 190 216 216 VAL VAL A . n
A 1 191 ARG 191 217 217 ARG ARG A . n
A 1 192 GLY 192 218 218 GLY GLY A . n
A 1 193 GLY 193 219 219 GLY GLY A . n
A 1 194 CYS 194 220 220 CYS CYS A . n
A 1 195 ALA 195 220 220 ALA ALA A A n
A 1 196 SER 196 221 221 SER SER A . n
A 1 197 GLY 197 222 222 GLY GLY A . n
A 1 198 LEU 198 223 223 LEU LEU A . n
A 1 199 TYR 199 224 224 TYR TYR A . n
A 1 200 PRO 200 225 225 PRO PRO A . n
A 1 201 ASP 201 226 226 ASP ASP A . n
A 1 202 ALA 202 227 227 ALA ALA A . n
A 1 203 PHE 203 228 228 PHE PHE A . n
A 1 204 ALA 204 229 229 ALA ALA A . n
A 1 205 PRO 205 230 230 PRO PRO A . n
A 1 206 VAL 206 231 231 VAL VAL A . n
A 1 207 ALA 207 232 232 ALA ALA A . n
A 1 208 GLN 208 233 233 GLN GLN A . n
A 1 209 PHE 209 234 234 PHE PHE A . n
A 1 210 VAL 210 235 235 VAL VAL A . n
A 1 211 ASN 211 236 236 ASN ASN A . n
A 1 212 TRP 212 237 237 TRP TRP A . n
A 1 213 ILE 213 238 238 ILE ILE A . n
A 1 214 ASP 214 239 239 ASP ASP A . n
A 1 215 SER 215 240 240 SER SER A . n
A 1 216 ILE 216 241 241 ILE ILE A . n
A 1 217 ILE 217 242 242 ILE ILE A . n
A 1 218 GLN 218 243 243 GLN GLN A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 A NAG 401 n
B 2 FUC 2 B FUC 2 A FUC 402 n
C 2 NAG 1 C NAG 1 A NAG 411 n
C 2 FUC 2 C FUC 2 A FUC 412 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAG 1 403 403 NAG NAG A .
E 4 JJX 1 1001 1001 JJX JJX A .
F 5 DMS 1 1002 1002 DMS DMS A .
G 6 HOH 1 2001 2001 HOH HOH A .
G 6 HOH 2 2002 2002 HOH HOH A .
G 6 HOH 3 2003 2003 HOH HOH A .
G 6 HOH 4 2004 2004 HOH HOH A .
G 6 HOH 5 2005 2005 HOH HOH A .
G 6 HOH 6 2006 2006 HOH HOH A .
G 6 HOH 7 2007 2007 HOH HOH A .
G 6 HOH 8 2008 2008 HOH HOH A .
G 6 HOH 9 2009 2009 HOH HOH A .
G 6 HOH 10 2010 2010 HOH HOH A .
G 6 HOH 11 2011 2011 HOH HOH A .
G 6 HOH 12 2012 2012 HOH HOH A .
G 6 HOH 13 2013 2013 HOH HOH A .
G 6 HOH 14 2014 2014 HOH HOH A .
G 6 HOH 15 2015 2015 HOH HOH A .
G 6 HOH 16 2016 2016 HOH HOH A .
G 6 HOH 17 2017 2017 HOH HOH A .
G 6 HOH 18 2018 2018 HOH HOH A .
G 6 HOH 19 2019 2019 HOH HOH A .
G 6 HOH 20 2020 2020 HOH HOH A .
G 6 HOH 21 2021 2021 HOH HOH A .
G 6 HOH 22 2022 2022 HOH HOH A .
G 6 HOH 23 2023 2023 HOH HOH A .
G 6 HOH 24 2024 2024 HOH HOH A .
G 6 HOH 25 2025 2025 HOH HOH A .
G 6 HOH 26 2026 2026 HOH HOH A .
G 6 HOH 27 2027 2027 HOH HOH A .
G 6 HOH 28 2028 2028 HOH HOH A .
G 6 HOH 29 2029 2029 HOH HOH A .
G 6 HOH 30 2030 2030 HOH HOH A .
G 6 HOH 31 2031 2031 HOH HOH A .
G 6 HOH 32 2032 2032 HOH HOH A .
G 6 HOH 33 2033 2033 HOH HOH A .
G 6 HOH 34 2034 2034 HOH HOH A .
G 6 HOH 35 2035 2035 HOH HOH A .
G 6 HOH 36 2036 2036 HOH HOH A .
G 6 HOH 37 2037 2037 HOH HOH A .
G 6 HOH 38 2038 2038 HOH HOH A .
G 6 HOH 39 2039 2039 HOH HOH A .
G 6 HOH 40 2040 2040 HOH HOH A .
G 6 HOH 41 2041 2041 HOH HOH A .
G 6 HOH 42 2042 2042 HOH HOH A .
G 6 HOH 43 2043 2043 HOH HOH A .
G 6 HOH 44 2044 2044 HOH HOH A .
G 6 HOH 45 2045 2045 HOH HOH A .
G 6 HOH 46 2046 2046 HOH HOH A .
G 6 HOH 47 2047 2047 HOH HOH A .
G 6 HOH 48 2048 2048 HOH HOH A .
G 6 HOH 49 2049 2049 HOH HOH A .
G 6 HOH 50 2050 2050 HOH HOH A .
G 6 HOH 51 2051 2051 HOH HOH A .
G 6 HOH 52 2052 2052 HOH HOH A .
G 6 HOH 53 2053 2053 HOH HOH A .
G 6 HOH 54 2054 2054 HOH HOH A .
G 6 HOH 55 2055 2055 HOH HOH A .
G 6 HOH 56 2056 2056 HOH HOH A .
G 6 HOH 57 2057 2057 HOH HOH A .
G 6 HOH 58 2058 2058 HOH HOH A .
G 6 HOH 59 2059 2059 HOH HOH A .
G 6 HOH 60 2060 2060 HOH HOH A .
G 6 HOH 61 2061 2061 HOH HOH A .
G 6 HOH 62 2062 2062 HOH HOH A .
G 6 HOH 63 2063 2063 HOH HOH A .
G 6 HOH 64 2064 2064 HOH HOH A .
G 6 HOH 65 2065 2065 HOH HOH A .
G 6 HOH 66 2066 2066 HOH HOH A .
G 6 HOH 67 2067 2067 HOH HOH A .
G 6 HOH 68 2068 2068 HOH HOH A .
G 6 HOH 69 2069 2069 HOH HOH A .
G 6 HOH 70 2070 2070 HOH HOH A .
G 6 HOH 71 2071 2071 HOH HOH A .
#
_pdbx_unobs_or_zero_occ_atoms.id 1
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1
_pdbx_unobs_or_zero_occ_atoms.polymer_flag N
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id A
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id NAG
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 403
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1
_pdbx_unobs_or_zero_occ_atoms.label_alt_id ?
_pdbx_unobs_or_zero_occ_atoms.label_asym_id D
_pdbx_unobs_or_zero_occ_atoms.label_comp_id NAG
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 1
_pdbx_unobs_or_zero_occ_atoms.label_atom_id O1
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.5.0109 ? 1
MOSFLM 'data reduction' . ? 2
SCALA 'data scaling' . ? 3
PHASER phasing . ? 4
#
_cell.entry_id 5A0B
_cell.length_a 77.459
_cell.length_b 77.459
_cell.length_c 149.625
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5A0B
_symmetry.space_group_name_H-M 'P 63 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 182
#
_exptl.entry_id 5A0B
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.84
_exptl_crystal.density_percent_sol 56.65
_exptl_crystal.description NONE
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details '15% PEG6000, 0.2M AMMONIUM CITRATE'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'MAR MAR IP'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details MIRRORS
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.54
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU MICROMAX-007'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.54
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 5A0B
_reflns.observed_criterion_sigma_I 2.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 61.19
_reflns.d_resolution_high 2.21
_reflns.number_obs 27533
_reflns.number_all ?
_reflns.percent_possible_obs 92.7
_reflns.pdbx_Rmerge_I_obs 0.06
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 11.80
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 2.2
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 2.21
_reflns_shell.d_res_low 2.33
_reflns_shell.percent_possible_all 80.2
_reflns_shell.Rmerge_I_obs 0.18
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 4.50
_reflns_shell.pdbx_redundancy 2.1
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 5A0B
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 12858
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 49.94
_refine.ls_d_res_high 2.23
_refine.ls_percent_reflns_obs 99.14
_refine.ls_R_factor_obs 0.17495
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.17271
_refine.ls_R_factor_R_free 0.21816
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.9
_refine.ls_number_reflns_R_free 668
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.940
_refine.correlation_coeff_Fo_to_Fc_free 0.915
_refine.B_iso_mean 24.272
_refine.aniso_B[1][1] -1.05
_refine.aniso_B[2][2] -1.05
_refine.aniso_B[3][3] 1.57
_refine.aniso_B[1][2] -0.52
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.219
_refine.pdbx_overall_ESU_R_Free 0.185
_refine.overall_SU_ML 0.117
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 10.089
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1606
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 106
_refine_hist.number_atoms_solvent 71
_refine_hist.number_atoms_total 1783
_refine_hist.d_res_high 2.23
_refine_hist.d_res_low 49.94
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.023 0.022 ? 1746 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.914 2.009 ? 2377 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 6.512 5.000 ? 208 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 31.508 22.535 ? 71 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 16.938 15.000 ? 248 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg 19.667 15.000 ? 17 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.137 0.200 ? 284 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.011 0.021 ? 1296 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 1.038 1.500 ? 1055 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 1.812 2.000 ? 1681 'X-RAY DIFFRACTION' ?
r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 2.891 3.000 ? 691 'X-RAY DIFFRACTION' ?
r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_it 4.488 4.500 ? 696 'X-RAY DIFFRACTION' ?
r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.229
_refine_ls_shell.d_res_low 2.287
_refine_ls_shell.number_reflns_R_work 865
_refine_ls_shell.R_factor_R_work 0.190
_refine_ls_shell.percent_reflns_obs 92.01
_refine_ls_shell.R_factor_R_free 0.285
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 33
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 5A0B
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 5A0B
_struct.title 'Crystal Structure of human neutrophil elastase in complex with a dihydropyrimidone inhibitor'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 5A0B
_struct_keywords.pdbx_keywords HYDROLASE
_struct_keywords.text 'TRYPSIN FAMILY FOLD, PROTEASE, HYDROLASE, HYDROLASE- INHIBITOR COMPLEX'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
E N N 4 ?
F N N 5 ?
G N N 6 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code ELNE_HUMAN
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession P08246
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 5A0B
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 218
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P08246
_struct_ref_seq.db_align_beg 30
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 247
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 16
_struct_ref_seq.pdbx_auth_seq_align_end 243
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 ALA A 39 ? ALA A 44 ? ALA A 55 ALA A 60 1 ? 6
HELX_P HELX_P2 2 ASN A 47 ? ALA A 50 C ASN A 63 ALA A 63 5 ? 4
HELX_P HELX_P3 3 PHE A 209 ? GLN A 218 ? PHE A 234 GLN A 243 1 ? 10
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 2.022 ? ?
disulf2 disulf ? ? A CYS 122 SG ? ? ? 1_555 A CYS 179 SG ? ? A CYS 136 A CYS 201 1_555 ? ? ? ? ? ? ? 1.990 ? ?
disulf3 disulf ? ? A CYS 152 SG ? ? ? 1_555 A CYS 158 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.064 ? ?
disulf4 disulf ? ? A CYS 169 SG ? ? ? 1_555 A CYS 194 SG ? ? A CYS 191 A CYS 220 1_555 ? ? ? ? ? ? ? 2.134 ? ?
covale1 covale one ? A ASN 95 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 109 C NAG 1 1_555 ? ? ? ? ? ? ? 1.457 ? N-Glycosylation
covale2 covale one ? A ASN 144 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 159 B NAG 1 1_555 ? ? ? ? ? ? ? 1.430 ? N-Glycosylation
covale3 covale both ? B NAG . O6 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 2 1_555 ? ? ? ? ? ? ? 1.462 ? ?
covale4 covale both ? C NAG . O6 ? ? ? 1_555 C FUC . C1 ? ? C NAG 1 C FUC 2 1_555 ? ? ? ? ? ? ? 1.472 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG B . ? ASN A 144 ? NAG B 1 ? 1_555 ASN A 159 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 NAG C . ? ASN A 95 ? NAG C 1 ? 1_555 ASN A 109 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 CYS A 26 ? CYS A 42 ? CYS A 42 ? 1_555 CYS A 58 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 122 ? CYS A 179 ? CYS A 136 ? 1_555 CYS A 201 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS A 152 ? CYS A 158 ? CYS A 168 ? 1_555 CYS A 182 ? 1_555 SG SG . . . None 'Disulfide bridge'
6 CYS A 169 ? CYS A 194 ? CYS A 191 ? 1_555 CYS A 220 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA ? 8 ?
AB ? 7 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA 1 2 ? anti-parallel
AA 2 3 ? anti-parallel
AA 3 4 ? anti-parallel
AA 4 5 ? anti-parallel
AA 5 6 ? anti-parallel
AA 6 7 ? anti-parallel
AB 1 2 ? anti-parallel
AB 2 3 ? anti-parallel
AB 3 4 ? anti-parallel
AB 4 5 ? anti-parallel
AB 5 6 ? anti-parallel
AB 6 7 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA 1 ARG A 5 ? ARG A 6 ? ARG A 20 ARG A 21
AA 2 GLN A 141 ? VAL A 148 ? GLN A 156 VAL A 163
AA 3 VAL A 157 ? LEU A 160 ? VAL A 181 LEU A 184
AA 4 ASP A 201 ? PRO A 205 ? ASP A 226 PRO A 230
AA 5 LEU A 182 ? PHE A 189 ? LEU A 208 PHE A 215
AA 6 PRO A 176 ? CYS A 179 ? PRO A 198 CYS A 201
AA 7 GLN A 121 ? GLY A 126 ? GLN A 135 GLY A 140
AA 8 ARG A 5 ? ARG A 6 ? ARG A 20 ARG A 21
AB 1 MET A 15 ? LEU A 20 ? MET A 30 LEU A 35
AB 2 GLY A 23 ? ALA A 32 ? GLY A 39 ALA A 48
AB 3 PHE A 35 ? SER A 38 ? PHE A 51 SER A 54
AB 4 VAL A 90 ? LEU A 94 ? VAL A 104 LEU A 108
AB 5 GLN A 68 ? PHE A 76 ? GLN A 81 PHE A 89
AB 6 ARG A 52 ? LEU A 55 ? ARG A 65 LEU A 68
AB 7 MET A 15 ? LEU A 20 ? MET A 30 LEU A 35
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA 1 2 N ARG A 5 ? N ARG A 20 O GLU A 142 ? O GLU A 157
AA 2 3 N VAL A 148 ? N VAL A 163 O CYS A 158 ? O CYS A 182
AA 3 4 N THR A 159 ? N THR A 183 O ASP A 201 ? O ASP A 226
AA 4 5 N ALA A 204 ? N ALA A 229 O ILE A 186 ? O ILE A 212
AA 5 6 N HIS A 184 ? N HIS A 210 O LEU A 177 ? O LEU A 199
AA 6 7 N VAL A 178 ? N VAL A 200 O LEU A 123 ? O LEU A 137
AB 1 2 N LEU A 20 ? N LEU A 35 O GLY A 23 ? O GLY A 39
AB 2 3 N ILE A 31 ? N ILE A 47 O PHE A 35 ? O PHE A 51
AB 3 4 N SER A 38 ? N SER A 54 O VAL A 90 ? O VAL A 104
AB 4 5 O GLN A 93 ? O GLN A 107 N GLN A 73 ? N GLN A 86
AB 5 6 N PHE A 70 ? N PHE A 83 O VAL A 53 ? O VAL A 66
AB 6 7 N VAL A 54 ? N VAL A 67 O SER A 17 ? O SER A 32
#
_pdbx_entry_details.entry_id 5A0B
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 HOH
_pdbx_validate_close_contact.auth_seq_id_1 2018
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 2053
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 1.82
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 C A LEU 166 ? ? N A CYS 168 ? ? 1.574 1.336 0.238 0.023 Y
2 1 C A CYS 168 ? ? N A ARG 177 ? ? 1.545 1.336 0.209 0.023 Y
3 1 C A ASN 202 ? ? N A GLY 207 ? ? 1.640 1.336 0.304 0.023 Y
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CG A MET 53 ? ? SD A MET 53 ? ? CE A MET 53 ? ? 88.83 100.20 -11.37 1.60 N
2 1 O A GLU 90 ? ? C A GLU 90 ? ? N A ASN 92 ? ? 111.61 122.70 -11.09 1.60 Y
3 1 CA A ASN 202 ? ? C A ASN 202 ? ? N A GLY 207 ? ? 130.67 116.20 14.47 2.00 Y
4 1 O A ASN 202 ? ? C A ASN 202 ? ? N A GLY 207 ? ? 107.03 123.20 -16.17 1.70 Y
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 HIS A 71 ? ? -130.16 -69.11
2 1 LEU A 223 ? ? -131.10 -56.00
#
loop_
_pdbx_validate_main_chain_plane.id
_pdbx_validate_main_chain_plane.PDB_model_num
_pdbx_validate_main_chain_plane.auth_comp_id
_pdbx_validate_main_chain_plane.auth_asym_id
_pdbx_validate_main_chain_plane.auth_seq_id
_pdbx_validate_main_chain_plane.PDB_ins_code
_pdbx_validate_main_chain_plane.label_alt_id
_pdbx_validate_main_chain_plane.improper_torsion_angle
1 1 GLU A 90 ? ? 21.68
2 1 LEU A 166 ? ? 11.33
3 1 CYS A 168 ? ? 18.27
#
loop_
_pdbx_validate_polymer_linkage.id
_pdbx_validate_polymer_linkage.PDB_model_num
_pdbx_validate_polymer_linkage.auth_atom_id_1
_pdbx_validate_polymer_linkage.auth_asym_id_1
_pdbx_validate_polymer_linkage.auth_comp_id_1
_pdbx_validate_polymer_linkage.auth_seq_id_1
_pdbx_validate_polymer_linkage.PDB_ins_code_1
_pdbx_validate_polymer_linkage.label_alt_id_1
_pdbx_validate_polymer_linkage.auth_atom_id_2
_pdbx_validate_polymer_linkage.auth_asym_id_2
_pdbx_validate_polymer_linkage.auth_comp_id_2
_pdbx_validate_polymer_linkage.auth_seq_id_2
_pdbx_validate_polymer_linkage.PDB_ins_code_2
_pdbx_validate_polymer_linkage.label_alt_id_2
_pdbx_validate_polymer_linkage.dist
1 1 C A ARG 36 ? ? N A GLY 38 ? ? 1.80
2 1 C A ASN 202 ? ? N A GLY 207 ? ? 1.64
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 95 A ASN 109 ? ASN 'GLYCOSYLATION SITE'
2 A ASN 144 A ASN 159 ? ASN 'GLYCOSYLATION SITE'
#
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.id 1
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x -17.7896
_pdbx_refine_tls.origin_y -13.6691
_pdbx_refine_tls.origin_z 19.2987
_pdbx_refine_tls.T[1][1] 0.0139
_pdbx_refine_tls.T[2][2] 0.0213
_pdbx_refine_tls.T[3][3] 0.0018
_pdbx_refine_tls.T[1][2] -0.0077
_pdbx_refine_tls.T[1][3] 0.0006
_pdbx_refine_tls.T[2][3] 0.0046
_pdbx_refine_tls.L[1][1] 0.8106
_pdbx_refine_tls.L[2][2] 0.2472
_pdbx_refine_tls.L[3][3] 0.2500
_pdbx_refine_tls.L[1][2] 0.1226
_pdbx_refine_tls.L[1][3] -0.0590
_pdbx_refine_tls.L[2][3] 0.0534
_pdbx_refine_tls.S[1][1] -0.0006
_pdbx_refine_tls.S[1][2] 0.0176
_pdbx_refine_tls.S[1][3] 0.0158
_pdbx_refine_tls.S[2][1] 0.0082
_pdbx_refine_tls.S[2][2] -0.0083
_pdbx_refine_tls.S[2][3] 0.0058
_pdbx_refine_tls.S[3][1] -0.0004
_pdbx_refine_tls.S[3][2] 0.0304
_pdbx_refine_tls.S[3][3] 0.0089
#
_pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls_group.id 1
_pdbx_refine_tls_group.refine_tls_id 1
_pdbx_refine_tls_group.beg_auth_asym_id A
_pdbx_refine_tls_group.beg_auth_seq_id 16
_pdbx_refine_tls_group.beg_label_asym_id ?
_pdbx_refine_tls_group.beg_label_seq_id ?
_pdbx_refine_tls_group.end_auth_asym_id A
_pdbx_refine_tls_group.end_auth_seq_id 243
_pdbx_refine_tls_group.end_label_asym_id ?
_pdbx_refine_tls_group.end_label_seq_id ?
_pdbx_refine_tls_group.selection ?
_pdbx_refine_tls_group.selection_details ?
#
_pdbx_database_remark.id 700
_pdbx_database_remark.text
;
SHEET
DETERMINATION METHOD: DSSP
THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY
A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY
A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
;
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A ARG 146 ? A ARG 132
2 1 Y 1 A ASN 147 ? A ASN 133
3 1 Y 1 A ARG 148 ? A ARG 134
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
DMS S S N N 88
DMS O O N N 89
DMS C1 C N N 90
DMS C2 C N N 91
DMS H11 H N N 92
DMS H12 H N N 93
DMS H13 H N N 94
DMS H21 H N N 95
DMS H22 H N N 96
DMS H23 H N N 97
FUC C1 C N R 98
FUC C2 C N S 99
FUC C3 C N R 100
FUC C4 C N S 101
FUC C5 C N S 102
FUC C6 C N N 103
FUC O1 O N N 104
FUC O2 O N N 105
FUC O3 O N N 106
FUC O4 O N N 107
FUC O5 O N N 108
FUC H1 H N N 109
FUC H2 H N N 110
FUC H3 H N N 111
FUC H4 H N N 112
FUC H5 H N N 113
FUC H61 H N N 114
FUC H62 H N N 115
FUC H63 H N N 116
FUC HO1 H N N 117
FUC HO2 H N N 118
FUC HO3 H N N 119
FUC HO4 H N N 120
GLN N N N N 121
GLN CA C N S 122
GLN C C N N 123
GLN O O N N 124
GLN CB C N N 125
GLN CG C N N 126
GLN CD C N N 127
GLN OE1 O N N 128
GLN NE2 N N N 129
GLN OXT O N N 130
GLN H H N N 131
GLN H2 H N N 132
GLN HA H N N 133
GLN HB2 H N N 134
GLN HB3 H N N 135
GLN HG2 H N N 136
GLN HG3 H N N 137
GLN HE21 H N N 138
GLN HE22 H N N 139
GLN HXT H N N 140
GLU N N N N 141
GLU CA C N S 142
GLU C C N N 143
GLU O O N N 144
GLU CB C N N 145
GLU CG C N N 146
GLU CD C N N 147
GLU OE1 O N N 148
GLU OE2 O N N 149
GLU OXT O N N 150
GLU H H N N 151
GLU H2 H N N 152
GLU HA H N N 153
GLU HB2 H N N 154
GLU HB3 H N N 155
GLU HG2 H N N 156
GLU HG3 H N N 157
GLU HE2 H N N 158
GLU HXT H N N 159
GLY N N N N 160
GLY CA C N N 161
GLY C C N N 162
GLY O O N N 163
GLY OXT O N N 164
GLY H H N N 165
GLY H2 H N N 166
GLY HA2 H N N 167
GLY HA3 H N N 168
GLY HXT H N N 169
HIS N N N N 170
HIS CA C N S 171
HIS C C N N 172
HIS O O N N 173
HIS CB C N N 174
HIS CG C Y N 175
HIS ND1 N Y N 176
HIS CD2 C Y N 177
HIS CE1 C Y N 178
HIS NE2 N Y N 179
HIS OXT O N N 180
HIS H H N N 181
HIS H2 H N N 182
HIS HA H N N 183
HIS HB2 H N N 184
HIS HB3 H N N 185
HIS HD1 H N N 186
HIS HD2 H N N 187
HIS HE1 H N N 188
HIS HE2 H N N 189
HIS HXT H N N 190
HOH O O N N 191
HOH H1 H N N 192
HOH H2 H N N 193
ILE N N N N 194
ILE CA C N S 195
ILE C C N N 196
ILE O O N N 197
ILE CB C N S 198
ILE CG1 C N N 199
ILE CG2 C N N 200
ILE CD1 C N N 201
ILE OXT O N N 202
ILE H H N N 203
ILE H2 H N N 204
ILE HA H N N 205
ILE HB H N N 206
ILE HG12 H N N 207
ILE HG13 H N N 208
ILE HG21 H N N 209
ILE HG22 H N N 210
ILE HG23 H N N 211
ILE HD11 H N N 212
ILE HD12 H N N 213
ILE HD13 H N N 214
ILE HXT H N N 215
JJX C33 C N N 216
JJX C34 C N N 217
JJX N35 N N N 218
JJX C38 C N N 219
JJX C40 C N N 220
JJX C39 C N N 221
JJX C36 C N N 222
JJX C37 C N N 223
JJX N31 N N N 224
JJX C30 C N N 225
JJX O32 O N N 226
JJX C29 C N N 227
JJX N12 N N N 228
JJX C11 C N N 229
JJX O21 O N N 230
JJX C7 C N R 231
JJX C3 C Y N 232
JJX C2 C Y N 233
JJX C1 C Y N 234
JJX C6 C Y N 235
JJX C19 C N N 236
JJX N20 N N N 237
JJX C5 C Y N 238
JJX C4 C Y N 239
JJX C8 C N N 240
JJX C27 C N N 241
JJX N28 N N N 242
JJX C9 C N N 243
JJX C22 C N N 244
JJX N10 N N N 245
JJX C13 C Y N 246
JJX C18 C Y N 247
JJX C14 C Y N 248
JJX C15 C Y N 249
JJX C16 C Y N 250
JJX C17 C Y N 251
JJX C23 C N N 252
JJX F25 F N N 253
JJX F26 F N N 254
JJX F24 F N N 255
JJX H331 H N N 256
JJX H332 H N N 257
JJX H341 H N N 258
JJX H342 H N N 259
JJX H38 H N N 260
JJX H361 H N N 261
JJX H362 H N N 262
JJX H401 H N N 263
JJX H402 H N N 264
JJX H403 H N N 265
JJX H391 H N N 266
JJX H392 H N N 267
JJX H393 H N N 268
JJX H371 H N N 269
JJX H372 H N N 270
JJX H291 H N N 271
JJX H292 H N N 272
JJX H7 H N N 273
JJX H2 H N N 274
JJX H4 H N N 275
JJX H1 H N N 276
JJX H5 H N N 277
JJX H221 H N N 278
JJX H222 H N N 279
JJX H223 H N N 280
JJX H18 H N N 281
JJX H14 H N N 282
JJX H15 H N N 283
JJX H16 H N N 284
LEU N N N N 285
LEU CA C N S 286
LEU C C N N 287
LEU O O N N 288
LEU CB C N N 289
LEU CG C N N 290
LEU CD1 C N N 291
LEU CD2 C N N 292
LEU OXT O N N 293
LEU H H N N 294
LEU H2 H N N 295
LEU HA H N N 296
LEU HB2 H N N 297
LEU HB3 H N N 298
LEU HG H N N 299
LEU HD11 H N N 300
LEU HD12 H N N 301
LEU HD13 H N N 302
LEU HD21 H N N 303
LEU HD22 H N N 304
LEU HD23 H N N 305
LEU HXT H N N 306
MET N N N N 307
MET CA C N S 308
MET C C N N 309
MET O O N N 310
MET CB C N N 311
MET CG C N N 312
MET SD S N N 313
MET CE C N N 314
MET OXT O N N 315
MET H H N N 316
MET H2 H N N 317
MET HA H N N 318
MET HB2 H N N 319
MET HB3 H N N 320
MET HG2 H N N 321
MET HG3 H N N 322
MET HE1 H N N 323
MET HE2 H N N 324
MET HE3 H N N 325
MET HXT H N N 326
NAG C1 C N R 327
NAG C2 C N R 328
NAG C3 C N R 329
NAG C4 C N S 330
NAG C5 C N R 331
NAG C6 C N N 332
NAG C7 C N N 333
NAG C8 C N N 334
NAG N2 N N N 335
NAG O1 O N N 336
NAG O3 O N N 337
NAG O4 O N N 338
NAG O5 O N N 339
NAG O6 O N N 340
NAG O7 O N N 341
NAG H1 H N N 342
NAG H2 H N N 343
NAG H3 H N N 344
NAG H4 H N N 345
NAG H5 H N N 346
NAG H61 H N N 347
NAG H62 H N N 348
NAG H81 H N N 349
NAG H82 H N N 350
NAG H83 H N N 351
NAG HN2 H N N 352
NAG HO1 H N N 353
NAG HO3 H N N 354
NAG HO4 H N N 355
NAG HO6 H N N 356
PHE N N N N 357
PHE CA C N S 358
PHE C C N N 359
PHE O O N N 360
PHE CB C N N 361
PHE CG C Y N 362
PHE CD1 C Y N 363
PHE CD2 C Y N 364
PHE CE1 C Y N 365
PHE CE2 C Y N 366
PHE CZ C Y N 367
PHE OXT O N N 368
PHE H H N N 369
PHE H2 H N N 370
PHE HA H N N 371
PHE HB2 H N N 372
PHE HB3 H N N 373
PHE HD1 H N N 374
PHE HD2 H N N 375
PHE HE1 H N N 376
PHE HE2 H N N 377
PHE HZ H N N 378
PHE HXT H N N 379
PRO N N N N 380
PRO CA C N S 381
PRO C C N N 382
PRO O O N N 383
PRO CB C N N 384
PRO CG C N N 385
PRO CD C N N 386
PRO OXT O N N 387
PRO H H N N 388
PRO HA H N N 389
PRO HB2 H N N 390
PRO HB3 H N N 391
PRO HG2 H N N 392
PRO HG3 H N N 393
PRO HD2 H N N 394
PRO HD3 H N N 395
PRO HXT H N N 396
SER N N N N 397
SER CA C N S 398
SER C C N N 399
SER O O N N 400
SER CB C N N 401
SER OG O N N 402
SER OXT O N N 403
SER H H N N 404
SER H2 H N N 405
SER HA H N N 406
SER HB2 H N N 407
SER HB3 H N N 408
SER HG H N N 409
SER HXT H N N 410
THR N N N N 411
THR CA C N S 412
THR C C N N 413
THR O O N N 414
THR CB C N R 415
THR OG1 O N N 416
THR CG2 C N N 417
THR OXT O N N 418
THR H H N N 419
THR H2 H N N 420
THR HA H N N 421
THR HB H N N 422
THR HG1 H N N 423
THR HG21 H N N 424
THR HG22 H N N 425
THR HG23 H N N 426
THR HXT H N N 427
TRP N N N N 428
TRP CA C N S 429
TRP C C N N 430
TRP O O N N 431
TRP CB C N N 432
TRP CG C Y N 433
TRP CD1 C Y N 434
TRP CD2 C Y N 435
TRP NE1 N Y N 436
TRP CE2 C Y N 437
TRP CE3 C Y N 438
TRP CZ2 C Y N 439
TRP CZ3 C Y N 440
TRP CH2 C Y N 441
TRP OXT O N N 442
TRP H H N N 443
TRP H2 H N N 444
TRP HA H N N 445
TRP HB2 H N N 446
TRP HB3 H N N 447
TRP HD1 H N N 448
TRP HE1 H N N 449
TRP HE3 H N N 450
TRP HZ2 H N N 451
TRP HZ3 H N N 452
TRP HH2 H N N 453
TRP HXT H N N 454
TYR N N N N 455
TYR CA C N S 456
TYR C C N N 457
TYR O O N N 458
TYR CB C N N 459
TYR CG C Y N 460
TYR CD1 C Y N 461
TYR CD2 C Y N 462
TYR CE1 C Y N 463
TYR CE2 C Y N 464
TYR CZ C Y N 465
TYR OH O N N 466
TYR OXT O N N 467
TYR H H N N 468
TYR H2 H N N 469
TYR HA H N N 470
TYR HB2 H N N 471
TYR HB3 H N N 472
TYR HD1 H N N 473
TYR HD2 H N N 474
TYR HE1 H N N 475
TYR HE2 H N N 476
TYR HH H N N 477
TYR HXT H N N 478
VAL N N N N 479
VAL CA C N S 480
VAL C C N N 481
VAL O O N N 482
VAL CB C N N 483
VAL CG1 C N N 484
VAL CG2 C N N 485
VAL OXT O N N 486
VAL H H N N 487
VAL H2 H N N 488
VAL HA H N N 489
VAL HB H N N 490
VAL HG11 H N N 491
VAL HG12 H N N 492
VAL HG13 H N N 493
VAL HG21 H N N 494
VAL HG22 H N N 495
VAL HG23 H N N 496
VAL HXT H N N 497
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
DMS S O doub N N 83
DMS S C1 sing N N 84
DMS S C2 sing N N 85
DMS C1 H11 sing N N 86
DMS C1 H12 sing N N 87
DMS C1 H13 sing N N 88
DMS C2 H21 sing N N 89
DMS C2 H22 sing N N 90
DMS C2 H23 sing N N 91
FUC C1 C2 sing N N 92
FUC C1 O1 sing N N 93
FUC C1 O5 sing N N 94
FUC C1 H1 sing N N 95
FUC C2 C3 sing N N 96
FUC C2 O2 sing N N 97
FUC C2 H2 sing N N 98
FUC C3 C4 sing N N 99
FUC C3 O3 sing N N 100
FUC C3 H3 sing N N 101
FUC C4 C5 sing N N 102
FUC C4 O4 sing N N 103
FUC C4 H4 sing N N 104
FUC C5 C6 sing N N 105
FUC C5 O5 sing N N 106
FUC C5 H5 sing N N 107
FUC C6 H61 sing N N 108
FUC C6 H62 sing N N 109
FUC C6 H63 sing N N 110
FUC O1 HO1 sing N N 111
FUC O2 HO2 sing N N 112
FUC O3 HO3 sing N N 113
FUC O4 HO4 sing N N 114
GLN N CA sing N N 115
GLN N H sing N N 116
GLN N H2 sing N N 117
GLN CA C sing N N 118
GLN CA CB sing N N 119
GLN CA HA sing N N 120
GLN C O doub N N 121
GLN C OXT sing N N 122
GLN CB CG sing N N 123
GLN CB HB2 sing N N 124
GLN CB HB3 sing N N 125
GLN CG CD sing N N 126
GLN CG HG2 sing N N 127
GLN CG HG3 sing N N 128
GLN CD OE1 doub N N 129
GLN CD NE2 sing N N 130
GLN NE2 HE21 sing N N 131
GLN NE2 HE22 sing N N 132
GLN OXT HXT sing N N 133
GLU N CA sing N N 134
GLU N H sing N N 135
GLU N H2 sing N N 136
GLU CA C sing N N 137
GLU CA CB sing N N 138
GLU CA HA sing N N 139
GLU C O doub N N 140
GLU C OXT sing N N 141
GLU CB CG sing N N 142
GLU CB HB2 sing N N 143
GLU CB HB3 sing N N 144
GLU CG CD sing N N 145
GLU CG HG2 sing N N 146
GLU CG HG3 sing N N 147
GLU CD OE1 doub N N 148
GLU CD OE2 sing N N 149
GLU OE2 HE2 sing N N 150
GLU OXT HXT sing N N 151
GLY N CA sing N N 152
GLY N H sing N N 153
GLY N H2 sing N N 154
GLY CA C sing N N 155
GLY CA HA2 sing N N 156
GLY CA HA3 sing N N 157
GLY C O doub N N 158
GLY C OXT sing N N 159
GLY OXT HXT sing N N 160
HIS N CA sing N N 161
HIS N H sing N N 162
HIS N H2 sing N N 163
HIS CA C sing N N 164
HIS CA CB sing N N 165
HIS CA HA sing N N 166
HIS C O doub N N 167
HIS C OXT sing N N 168
HIS CB CG sing N N 169
HIS CB HB2 sing N N 170
HIS CB HB3 sing N N 171
HIS CG ND1 sing Y N 172
HIS CG CD2 doub Y N 173
HIS ND1 CE1 doub Y N 174
HIS ND1 HD1 sing N N 175
HIS CD2 NE2 sing Y N 176
HIS CD2 HD2 sing N N 177
HIS CE1 NE2 sing Y N 178
HIS CE1 HE1 sing N N 179
HIS NE2 HE2 sing N N 180
HIS OXT HXT sing N N 181
HOH O H1 sing N N 182
HOH O H2 sing N N 183
ILE N CA sing N N 184
ILE N H sing N N 185
ILE N H2 sing N N 186
ILE CA C sing N N 187
ILE CA CB sing N N 188
ILE CA HA sing N N 189
ILE C O doub N N 190
ILE C OXT sing N N 191
ILE CB CG1 sing N N 192
ILE CB CG2 sing N N 193
ILE CB HB sing N N 194
ILE CG1 CD1 sing N N 195
ILE CG1 HG12 sing N N 196
ILE CG1 HG13 sing N N 197
ILE CG2 HG21 sing N N 198
ILE CG2 HG22 sing N N 199
ILE CG2 HG23 sing N N 200
ILE CD1 HD11 sing N N 201
ILE CD1 HD12 sing N N 202
ILE CD1 HD13 sing N N 203
ILE OXT HXT sing N N 204
JJX C33 C34 sing N N 205
JJX C33 N31 sing N N 206
JJX C34 N35 sing N N 207
JJX N35 C38 sing N N 208
JJX N35 C36 sing N N 209
JJX C38 C40 sing N N 210
JJX C38 C39 sing N N 211
JJX C36 C37 sing N N 212
JJX C37 N31 sing N N 213
JJX N31 C30 sing N N 214
JJX C30 O32 doub N N 215
JJX C30 C29 sing N N 216
JJX C29 N12 sing N N 217
JJX N12 C11 sing N N 218
JJX N12 C7 sing N N 219
JJX C11 O21 doub N N 220
JJX C11 N10 sing N N 221
JJX C7 C3 sing N N 222
JJX C7 C8 sing N N 223
JJX C3 C2 sing Y N 224
JJX C3 C4 doub Y N 225
JJX C2 C1 doub Y N 226
JJX C1 C6 sing Y N 227
JJX C6 C19 sing N N 228
JJX C6 C5 doub Y N 229
JJX C19 N20 trip N N 230
JJX C5 C4 sing Y N 231
JJX C8 C27 sing N N 232
JJX C8 C9 doub N N 233
JJX C27 N28 trip N N 234
JJX C9 C22 sing N N 235
JJX C9 N10 sing N N 236
JJX N10 C13 sing N N 237
JJX C13 C18 sing Y N 238
JJX C13 C14 doub Y N 239
JJX C18 C17 doub Y N 240
JJX C14 C15 sing Y N 241
JJX C15 C16 doub Y N 242
JJX C16 C17 sing Y N 243
JJX C17 C23 sing N N 244
JJX C23 F25 sing N N 245
JJX C23 F26 sing N N 246
JJX C23 F24 sing N N 247
JJX C33 H331 sing N N 248
JJX C33 H332 sing N N 249
JJX C34 H341 sing N N 250
JJX C34 H342 sing N N 251
JJX C38 H38 sing N N 252
JJX C36 H361 sing N N 253
JJX C36 H362 sing N N 254
JJX C40 H401 sing N N 255
JJX C40 H402 sing N N 256
JJX C40 H403 sing N N 257
JJX C39 H391 sing N N 258
JJX C39 H392 sing N N 259
JJX C39 H393 sing N N 260
JJX C37 H371 sing N N 261
JJX C37 H372 sing N N 262
JJX C29 H291 sing N N 263
JJX C29 H292 sing N N 264
JJX C7 H7 sing N N 265
JJX C2 H2 sing N N 266
JJX C4 H4 sing N N 267
JJX C1 H1 sing N N 268
JJX C5 H5 sing N N 269
JJX C22 H221 sing N N 270
JJX C22 H222 sing N N 271
JJX C22 H223 sing N N 272
JJX C18 H18 sing N N 273
JJX C14 H14 sing N N 274
JJX C15 H15 sing N N 275
JJX C16 H16 sing N N 276
LEU N CA sing N N 277
LEU N H sing N N 278
LEU N H2 sing N N 279
LEU CA C sing N N 280
LEU CA CB sing N N 281
LEU CA HA sing N N 282
LEU C O doub N N 283
LEU C OXT sing N N 284
LEU CB CG sing N N 285
LEU CB HB2 sing N N 286
LEU CB HB3 sing N N 287
LEU CG CD1 sing N N 288
LEU CG CD2 sing N N 289
LEU CG HG sing N N 290
LEU CD1 HD11 sing N N 291
LEU CD1 HD12 sing N N 292
LEU CD1 HD13 sing N N 293
LEU CD2 HD21 sing N N 294
LEU CD2 HD22 sing N N 295
LEU CD2 HD23 sing N N 296
LEU OXT HXT sing N N 297
MET N CA sing N N 298
MET N H sing N N 299
MET N H2 sing N N 300
MET CA C sing N N 301
MET CA CB sing N N 302
MET CA HA sing N N 303
MET C O doub N N 304
MET C OXT sing N N 305
MET CB CG sing N N 306
MET CB HB2 sing N N 307
MET CB HB3 sing N N 308
MET CG SD sing N N 309
MET CG HG2 sing N N 310
MET CG HG3 sing N N 311
MET SD CE sing N N 312
MET CE HE1 sing N N 313
MET CE HE2 sing N N 314
MET CE HE3 sing N N 315
MET OXT HXT sing N N 316
NAG C1 C2 sing N N 317
NAG C1 O1 sing N N 318
NAG C1 O5 sing N N 319
NAG C1 H1 sing N N 320
NAG C2 C3 sing N N 321
NAG C2 N2 sing N N 322
NAG C2 H2 sing N N 323
NAG C3 C4 sing N N 324
NAG C3 O3 sing N N 325
NAG C3 H3 sing N N 326
NAG C4 C5 sing N N 327
NAG C4 O4 sing N N 328
NAG C4 H4 sing N N 329
NAG C5 C6 sing N N 330
NAG C5 O5 sing N N 331
NAG C5 H5 sing N N 332
NAG C6 O6 sing N N 333
NAG C6 H61 sing N N 334
NAG C6 H62 sing N N 335
NAG C7 C8 sing N N 336
NAG C7 N2 sing N N 337
NAG C7 O7 doub N N 338
NAG C8 H81 sing N N 339
NAG C8 H82 sing N N 340
NAG C8 H83 sing N N 341
NAG N2 HN2 sing N N 342
NAG O1 HO1 sing N N 343
NAG O3 HO3 sing N N 344
NAG O4 HO4 sing N N 345
NAG O6 HO6 sing N N 346
PHE N CA sing N N 347
PHE N H sing N N 348
PHE N H2 sing N N 349
PHE CA C sing N N 350
PHE CA CB sing N N 351
PHE CA HA sing N N 352
PHE C O doub N N 353
PHE C OXT sing N N 354
PHE CB CG sing N N 355
PHE CB HB2 sing N N 356
PHE CB HB3 sing N N 357
PHE CG CD1 doub Y N 358
PHE CG CD2 sing Y N 359
PHE CD1 CE1 sing Y N 360
PHE CD1 HD1 sing N N 361
PHE CD2 CE2 doub Y N 362
PHE CD2 HD2 sing N N 363
PHE CE1 CZ doub Y N 364
PHE CE1 HE1 sing N N 365
PHE CE2 CZ sing Y N 366
PHE CE2 HE2 sing N N 367
PHE CZ HZ sing N N 368
PHE OXT HXT sing N N 369
PRO N CA sing N N 370
PRO N CD sing N N 371
PRO N H sing N N 372
PRO CA C sing N N 373
PRO CA CB sing N N 374
PRO CA HA sing N N 375
PRO C O doub N N 376
PRO C OXT sing N N 377
PRO CB CG sing N N 378
PRO CB HB2 sing N N 379
PRO CB HB3 sing N N 380
PRO CG CD sing N N 381
PRO CG HG2 sing N N 382
PRO CG HG3 sing N N 383
PRO CD HD2 sing N N 384
PRO CD HD3 sing N N 385
PRO OXT HXT sing N N 386
SER N CA sing N N 387
SER N H sing N N 388
SER N H2 sing N N 389
SER CA C sing N N 390
SER CA CB sing N N 391
SER CA HA sing N N 392
SER C O doub N N 393
SER C OXT sing N N 394
SER CB OG sing N N 395
SER CB HB2 sing N N 396
SER CB HB3 sing N N 397
SER OG HG sing N N 398
SER OXT HXT sing N N 399
THR N CA sing N N 400
THR N H sing N N 401
THR N H2 sing N N 402
THR CA C sing N N 403
THR CA CB sing N N 404
THR CA HA sing N N 405
THR C O doub N N 406
THR C OXT sing N N 407
THR CB OG1 sing N N 408
THR CB CG2 sing N N 409
THR CB HB sing N N 410
THR OG1 HG1 sing N N 411
THR CG2 HG21 sing N N 412
THR CG2 HG22 sing N N 413
THR CG2 HG23 sing N N 414
THR OXT HXT sing N N 415
TRP N CA sing N N 416
TRP N H sing N N 417
TRP N H2 sing N N 418
TRP CA C sing N N 419
TRP CA CB sing N N 420
TRP CA HA sing N N 421
TRP C O doub N N 422
TRP C OXT sing N N 423
TRP CB CG sing N N 424
TRP CB HB2 sing N N 425
TRP CB HB3 sing N N 426
TRP CG CD1 doub Y N 427
TRP CG CD2 sing Y N 428
TRP CD1 NE1 sing Y N 429
TRP CD1 HD1 sing N N 430
TRP CD2 CE2 doub Y N 431
TRP CD2 CE3 sing Y N 432
TRP NE1 CE2 sing Y N 433
TRP NE1 HE1 sing N N 434
TRP CE2 CZ2 sing Y N 435
TRP CE3 CZ3 doub Y N 436
TRP CE3 HE3 sing N N 437
TRP CZ2 CH2 doub Y N 438
TRP CZ2 HZ2 sing N N 439
TRP CZ3 CH2 sing Y N 440
TRP CZ3 HZ3 sing N N 441
TRP CH2 HH2 sing N N 442
TRP OXT HXT sing N N 443
TYR N CA sing N N 444
TYR N H sing N N 445
TYR N H2 sing N N 446
TYR CA C sing N N 447
TYR CA CB sing N N 448
TYR CA HA sing N N 449
TYR C O doub N N 450
TYR C OXT sing N N 451
TYR CB CG sing N N 452
TYR CB HB2 sing N N 453
TYR CB HB3 sing N N 454
TYR CG CD1 doub Y N 455
TYR CG CD2 sing Y N 456
TYR CD1 CE1 sing Y N 457
TYR CD1 HD1 sing N N 458
TYR CD2 CE2 doub Y N 459
TYR CD2 HD2 sing N N 460
TYR CE1 CZ doub Y N 461
TYR CE1 HE1 sing N N 462
TYR CE2 CZ sing Y N 463
TYR CE2 HE2 sing N N 464
TYR CZ OH sing N N 465
TYR OH HH sing N N 466
TYR OXT HXT sing N N 467
VAL N CA sing N N 468
VAL N H sing N N 469
VAL N H2 sing N N 470
VAL CA C sing N N 471
VAL CA CB sing N N 472
VAL CA HA sing N N 473
VAL C O doub N N 474
VAL C OXT sing N N 475
VAL CB CG1 sing N N 476
VAL CB CG2 sing N N 477
VAL CB HB sing N N 478
VAL CG1 HG11 sing N N 479
VAL CG1 HG12 sing N N 480
VAL CG1 HG13 sing N N 481
VAL CG2 HG21 sing N N 482
VAL CG2 HG22 sing N N 483
VAL CG2 HG23 sing N N 484
VAL OXT HXT sing N N 485
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 FUC 2 n
#
_atom_sites.entry_id 5A0B
_atom_sites.fract_transf_matrix[1][1] 0.012910
_atom_sites.fract_transf_matrix[1][2] 0.007454
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.014907
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.006683
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
F
N
O
S
#
loop_