HEADER LYASE 20-APR-15 5A0J OBSLTE 17-APR-19 5A0J 6OH6 TITLE CRYSTALLOGRAPHIC STRUCTURE OF THE BACTERIAL LABDANE-RELATED DITERPENE TITLE 2 SYNTHASE LRDC IN COMPLEX WITH MG AND PPI AT 2.36 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LABDANE-RELATED DITERPENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 STRAIN: K155; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21((DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B; SOURCE 11 OTHER_DETAILS: STREPTOMYCES SP. STRAIN K155 WAS ISOLATED FROM SOIL SOURCE 12 FROM VALLE DE CHALCO, STATE OF MEXICO BY UNAM KEYWDS LYASE, GENOME MINING, LRDC EXPDTA X-RAY DIFFRACTION AUTHOR S.CENTENO-LEIJA,S.SANCHEZ,E.RUDINO-PINERA,H.SERRANO-POSADA REVDAT 2 17-APR-19 5A0J 1 OBSLTE REVDAT 1 23-MAR-16 5A0J 0 JRNL AUTH S.CENTENO-LEIJA,S.SANCHEZ,E.RUDINO-PINERA,H.SERRANO-POSADA JRNL TITL CRYSTALLOGRAPHIC STRUCTURE OF A BACTERIAL CLASS I JRNL TITL 2 LABDANE-RELATED DITERPENE SYNTHASE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2357 - 4.9048 1.00 2735 141 0.2044 0.2359 REMARK 3 2 4.9048 - 3.8949 1.00 2630 135 0.1935 0.2113 REMARK 3 3 3.8949 - 3.4030 1.00 2614 133 0.2167 0.2528 REMARK 3 4 3.4030 - 3.0921 1.00 2591 130 0.2469 0.2561 REMARK 3 5 3.0921 - 2.8706 1.00 2608 136 0.2595 0.2674 REMARK 3 6 2.8706 - 2.7014 1.00 2571 135 0.2644 0.3245 REMARK 3 7 2.7014 - 2.5662 1.00 2584 133 0.2503 0.2907 REMARK 3 8 2.5662 - 2.4545 1.00 2567 137 0.2652 0.2960 REMARK 3 9 2.4545 - 2.3601 1.00 2534 135 0.2647 0.2913 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2495 REMARK 3 ANGLE : 1.173 3403 REMARK 3 CHIRALITY : 0.043 383 REMARK 3 PLANARITY : 0.006 441 REMARK 3 DIHEDRAL : 13.902 888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : SI-111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 35.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.10 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: LOW RESOLUTION SAD STRUCTURE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MAGNESIUM ACETATE TETRAHYDRATE, REMARK 280 0.08 M SODIUM CACODYLATE TRIHYDRATE PH 6.5, 16%(W/V) PEG 8000, REMARK 280 20%(V/V) GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.31267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.65633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.65633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.31267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 ARG A 321 REMARK 465 PRO A 322 REMARK 465 ASN A 323 REMARK 465 ARG A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 THR A 328 REMARK 465 SER A 329 REMARK 465 SER A 330 REMARK 465 PRO A 331 REMARK 465 ALA A 332 REMARK 465 ARG A 333 REMARK 465 SER A 334 REMARK 465 LEU A 335 REMARK 465 GLN A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 95 O HOH A 2016 1.87 REMARK 500 OD2 ASP A 303 O HOH A 2061 2.15 REMARK 500 O LEU A 41 O HOH A 2009 2.16 REMARK 500 OE1 GLU A 165 O HOH A 2013 2.16 REMARK 500 NH1 ARG A 237 O HOH A 2055 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 11 112.67 67.06 REMARK 500 SER A 49 131.05 68.24 REMARK 500 ALA A 71 -144.95 48.68 REMARK 500 ASP A 72 105.03 124.90 REMARK 500 GLU A 95 13.62 48.05 REMARK 500 ASP A 207 -63.70 31.67 REMARK 500 ALA A 289 -59.03 -160.47 REMARK 500 SER A 290 -146.85 52.07 REMARK 500 THR A 295 -167.93 -74.53 REMARK 500 ALA A 296 -55.51 57.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2065 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 9.49 ANGSTROMS REMARK 525 HOH A2067 DISTANCE = 9.66 ANGSTROMS REMARK 525 HOH A2068 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 8.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1321 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PPV A1324 O31 REMARK 620 2 GLU A 95 OE2 101.9 REMARK 620 3 GLU A 95 OE1 145.3 58.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1322 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PPV A1324 O31 REMARK 620 2 GLU A 95 OE2 80.8 REMARK 620 3 HOH A2013 O 147.9 84.8 REMARK 620 4 HOH A2016 O 78.0 40.3 108.4 REMARK 620 5 ASP A 90 OD2 66.8 102.5 88.8 133.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1323 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PPV A1324 O22 REMARK 620 2 ASN A 230 OD1 79.3 REMARK 620 3 SER A 234 OG 103.5 103.2 REMARK 620 4 PPV A1324 O11 85.4 86.2 167.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV A 1324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1328 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A0I RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF THE BACTERIAL LABDANE- RELATED REMARK 900 DITERPENE SYNTHASE LRDC IN COMPLEX WITH MG AND PPI AT 2.57 A REMARK 900 RESOLUTION. REMARK 900 RELATED ID: 5A0K RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF THE BACTERIAL LABDANE- RELATED REMARK 900 DITERPENE SYNTHASE LRDC IN COMPLEX WITH MG. DBREF 5A0J A 1 342 PDB 5A0J 5A0J 1 342 SEQRES 1 A 342 MET THR ASP THR ASP ASP GLY GLY THR MET LEU PRO LEU SEQRES 2 A 342 PRO ASP PHE THR ALA THR PHE PRO GLU PRO PHE PRO ALA SEQRES 3 A 342 GLY PRO HIS SER GLU ARG THR GLU HIS ARG LEU LEU ASP SEQRES 4 A 342 TRP LEU GLU GLU HIS PRO LEU LEU PRO SER ALA LYS ALA SEQRES 5 A 342 LYS ALA VAL LEU VAL ASN ILE THR SER HIS GLY ALA SER SEQRES 6 A 342 ARG THR PHE PRO THR ALA ASP ALA ASP ASP LEU LEU LEU SEQRES 7 A 342 PHE ALA GLU LEU LEU LEU TRP LEU THR ALA PHE ASP ASP SEQRES 8 A 342 VAL HIS ALA GLU GLY ASN GLY VAL GLY GLY PRO ALA ALA SEQRES 9 A 342 LEU VAL ASP ARG ALA SER GLU LEU MET LEU VAL LEU ALA SEQRES 10 A 342 GLY GLY ASN PRO PRO ARG ALA MET SER PRO PHE PRO ALA SEQRES 11 A 342 VAL LEU HIS ASP LEU LEU ALA ARG PHE ARG ALA ARG ALA SEQRES 12 A 342 SER ALA ALA ALA TYR HIS ARG LEU ALA ALA SER LEU ARG SEQRES 13 A 342 ASP THR LEU MET ALA LEU VAL TRP GLU ALA HIS HIS VAL SEQRES 14 A 342 ALA LYS PRO GLU GLY VAL ALA LEU ALA THR TYR LEU ALA SEQRES 15 A 342 MET ARG PRO HIS THR VAL PHE ILE LYS THR ILE THR ALA SEQRES 16 A 342 ALA GLY GLU ILE LEU LEU GLY TYR GLU LEU THR ASP THR SEQRES 17 A 342 GLN ARG ALA LEU ALA ALA VAL ARG ASN LEU GLU THR ALA SEQRES 18 A 342 VAL ALA ASN LEU ALA GLY TRP ILE ASN ASP LEU ALA SER SEQRES 19 A 342 TYR GLU ARG GLU MET GLN ARG GLY ARG GLY GLN PRO LEU SEQRES 20 A 342 SER LEU PRO THR LEU LEU HIS ALA ARG HIS GLY GLY THR SEQRES 21 A 342 ILE GLU GLU ALA PHE THR ARG ALA SER SER MET CYS GLU SEQRES 22 A 342 ASN GLU ALA ALA VAL ALA ARG ARG GLY ILE THR HIS LEU SEQRES 23 A 342 ALA HIS ALA SER PRO ASN ALA LEU THR ALA HIS ALA ARG SEQRES 24 A 342 ALA LEU GLU ASP ILE THR ARG SER PHE ILE TRP HIS THR SEQRES 25 A 342 SER HIS ALA ARG TYR GLN GLY ILE ARG PRO ASN ARG GLY SEQRES 26 A 342 SER SER THR SER SER PRO ALA ARG SER LEU GLN HIS HIS SEQRES 27 A 342 HIS HIS HIS HIS HET MG A1321 1 HET MG A1322 1 HET MG A1323 1 HET PPV A1324 9 HET GOL A1325 6 HET GOL A1326 6 HET GOL A1327 6 HET GOL A1328 6 HETNAM MG MAGNESIUM ION HETNAM PPV PYROPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 3(MG 2+) FORMUL 5 PPV H4 O7 P2 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 10 HOH *69(H2 O) HELIX 1 1 HIS A 29 HIS A 44 1 16 HELIX 2 2 SER A 49 PHE A 68 1 20 HELIX 3 3 ASP A 72 HIS A 93 1 22 HELIX 4 4 GLY A 100 GLY A 118 1 19 HELIX 5 5 PRO A 127 ALA A 143 1 17 HELIX 6 6 SER A 144 HIS A 167 1 24 HELIX 7 7 LYS A 171 VAL A 175 5 5 HELIX 8 8 ALA A 176 VAL A 188 1 13 HELIX 9 9 PHE A 189 LEU A 201 1 13 HELIX 10 10 ASP A 207 LEU A 212 1 6 HELIX 11 11 LEU A 212 GLN A 240 1 29 HELIX 12 12 SER A 248 GLY A 258 1 11 HELIX 13 13 THR A 260 HIS A 288 1 29 HELIX 14 14 ALA A 293 THR A 312 1 20 HELIX 15 15 HIS A 314 GLY A 319 1 6 LINK MG MG A1321 O31 PPV A1324 1555 1555 1.79 LINK MG MG A1321 OE2 GLU A 95 1555 1555 2.39 LINK MG MG A1321 OE1 GLU A 95 1555 1555 1.97 LINK MG MG A1322 O31 PPV A1324 1555 1555 2.47 LINK MG MG A1322 OE2 GLU A 95 1555 1555 2.56 LINK MG MG A1322 O HOH A2013 1555 1555 2.52 LINK MG MG A1322 O HOH A2016 1555 1555 2.82 LINK MG MG A1322 OD2 ASP A 90 1555 1555 2.92 LINK MG MG A1323 O22 PPV A1324 1555 1555 2.00 LINK MG MG A1323 OD1 ASN A 230 1555 1555 2.67 LINK MG MG A1323 OG SER A 234 1555 1555 2.29 LINK MG MG A1323 O11 PPV A1324 1555 1555 2.03 CISPEP 1 GLU A 22 PRO A 23 0 -6.33 CISPEP 2 HIS A 288 ALA A 289 0 -0.20 SITE 1 AC1 4 ASP A 90 GLU A 95 MG A1322 PPV A1324 SITE 1 AC2 7 ASP A 90 GLU A 95 GLU A 165 MG A1321 SITE 2 AC2 7 PPV A1324 HOH A2013 HOH A2016 SITE 1 AC3 4 ASN A 230 SER A 234 ARG A 237 PPV A1324 SITE 1 AC4 11 ASP A 90 GLU A 95 ARG A 184 ASN A 230 SITE 2 AC4 11 SER A 234 ARG A 237 ARG A 316 TYR A 317 SITE 3 AC4 11 MG A1321 MG A1322 MG A1323 SITE 1 AC5 3 LEU A 116 ALA A 117 ARG A 156 SITE 1 AC6 4 TRP A 40 HIS A 44 ASP A 134 ARG A 138 SITE 1 AC7 5 LEU A 181 THR A 220 ASN A 224 GOL A1328 SITE 2 AC7 5 HOH A2044 SITE 1 AC8 7 ASN A 217 THR A 220 ALA A 221 ASN A 224 SITE 2 AC8 7 GLU A 275 VAL A 278 GOL A1327 CRYST1 107.208 107.208 88.969 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009328 0.005385 0.000000 0.00000 SCALE2 0.000000 0.010771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011240 0.00000