data_5A0N # _entry.id 5A0N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5A0N PDBE EBI-63652 WWPDB D_1290063652 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5A0D unspecified 'N-TERMINAL THIOESTER DOMAIN OF SURFACE PROTEIN FROM CLOSTRIDIUM PERFRINGENS, CYS138ALA MUTANT' PDB 5A0G unspecified 'N-TERMINAL THIOESTER DOMAIN OF SURFACE PROTEIN FROM CLOSTRIDIUM PERFRINGENS' PDB 5A0L unspecified 'N-TERMINAL THIOESTER DOMAIN OF FIBRONECTIN-BINDING PROTEIN SFBI FROM STREPTOCOCCUS PYOGENES' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5A0N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-04-21 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Walden, M.' 1 'Edwards, J.M.' 2 'Dziewulska, A.M.' 3 'Kan, S.-Y.' 4 'Schwarz-Linek, U.' 5 'Banfield, M.J.' 6 # _citation.id primary _citation.title 'An internal thioester in a pathogen surface protein mediates covalent host binding.' _citation.journal_abbrev Elife _citation.journal_volume 4 _citation.page_first ? _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2050-084X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26032562 _citation.pdbx_database_id_DOI 10.7554/eLife.06638 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Walden, M.' 1 ? primary 'Edwards, J.M.' 2 ? primary 'Dziewulska, A.M.' 3 ? primary 'Bergmann, R.' 4 ? primary 'Saalbach, G.' 5 ? primary 'Kan, S.Y.' 6 ? primary 'Miller, O.K.' 7 ? primary 'Weckener, M.' 8 ? primary 'Jackson, R.J.' 9 ? primary 'Shirran, S.L.' 10 ? primary 'Botting, C.H.' 11 ? primary 'Florence, G.J.' 12 ? primary 'Rohde, M.' 13 ? primary 'Banfield, M.J.' 14 ? primary 'Schwarz-Linek, U.' 15 ? # _cell.entry_id 5A0N _cell.length_a 59.860 _cell.length_b 59.860 _cell.length_c 121.660 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A0N _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN F2 LIKE FIBRONECTIN-BINDING PROTEIN' 25808.996 1 ? ? 'THIOESTER DOMAIN, RESIDUES 42-258' 'INTERNAL THIOESTER LINKAGE BETWEEN CYS94 AND GLN247' 2 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 234 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMGGFPNDAKGISGNGKYYSLGQIEKLYSNQFATYNNLTVITSDTHENSDNFAFCLANGKRFPSFTDEKPKGIYTLVKD INKEQYTKLLKENHKWSSIPNLNQAWDTFSRLSYMYLKDPTDIVKRAWGTDLNTARTYFHQVIQYEIWRYTDGMRVSSDT NVYIYEKFSPQQKKALEMIRTDLYNFTVPYENLEYRFYKPDWVFGLGFQALATVRWKIEP ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMGGFPNDAKGISGNGKYYSLGQIEKLYSNQFATYNNLTVITSDTHENSDNFAFCLANGKRFPSFTDEKPKGIYTLVKD INKEQYTKLLKENHKWSSIPNLNQAWDTFSRLSYMYLKDPTDIVKRAWGTDLNTARTYFHQVIQYEIWRYTDGMRVSSDT NVYIYEKFSPQQKKALEMIRTDLYNFTVPYENLEYRFYKPDWVFGLGFQALATVRWKIEP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 GLY n 1 6 PHE n 1 7 PRO n 1 8 ASN n 1 9 ASP n 1 10 ALA n 1 11 LYS n 1 12 GLY n 1 13 ILE n 1 14 SER n 1 15 GLY n 1 16 ASN n 1 17 GLY n 1 18 LYS n 1 19 TYR n 1 20 TYR n 1 21 SER n 1 22 LEU n 1 23 GLY n 1 24 GLN n 1 25 ILE n 1 26 GLU n 1 27 LYS n 1 28 LEU n 1 29 TYR n 1 30 SER n 1 31 ASN n 1 32 GLN n 1 33 PHE n 1 34 ALA n 1 35 THR n 1 36 TYR n 1 37 ASN n 1 38 ASN n 1 39 LEU n 1 40 THR n 1 41 VAL n 1 42 ILE n 1 43 THR n 1 44 SER n 1 45 ASP n 1 46 THR n 1 47 HIS n 1 48 GLU n 1 49 ASN n 1 50 SER n 1 51 ASP n 1 52 ASN n 1 53 PHE n 1 54 ALA n 1 55 PHE n 1 56 CYS n 1 57 LEU n 1 58 ALA n 1 59 ASN n 1 60 GLY n 1 61 LYS n 1 62 ARG n 1 63 PHE n 1 64 PRO n 1 65 SER n 1 66 PHE n 1 67 THR n 1 68 ASP n 1 69 GLU n 1 70 LYS n 1 71 PRO n 1 72 LYS n 1 73 GLY n 1 74 ILE n 1 75 TYR n 1 76 THR n 1 77 LEU n 1 78 VAL n 1 79 LYS n 1 80 ASP n 1 81 ILE n 1 82 ASN n 1 83 LYS n 1 84 GLU n 1 85 GLN n 1 86 TYR n 1 87 THR n 1 88 LYS n 1 89 LEU n 1 90 LEU n 1 91 LYS n 1 92 GLU n 1 93 ASN n 1 94 HIS n 1 95 LYS n 1 96 TRP n 1 97 SER n 1 98 SER n 1 99 ILE n 1 100 PRO n 1 101 ASN n 1 102 LEU n 1 103 ASN n 1 104 GLN n 1 105 ALA n 1 106 TRP n 1 107 ASP n 1 108 THR n 1 109 PHE n 1 110 SER n 1 111 ARG n 1 112 LEU n 1 113 SER n 1 114 TYR n 1 115 MET n 1 116 TYR n 1 117 LEU n 1 118 LYS n 1 119 ASP n 1 120 PRO n 1 121 THR n 1 122 ASP n 1 123 ILE n 1 124 VAL n 1 125 LYS n 1 126 ARG n 1 127 ALA n 1 128 TRP n 1 129 GLY n 1 130 THR n 1 131 ASP n 1 132 LEU n 1 133 ASN n 1 134 THR n 1 135 ALA n 1 136 ARG n 1 137 THR n 1 138 TYR n 1 139 PHE n 1 140 HIS n 1 141 GLN n 1 142 VAL n 1 143 ILE n 1 144 GLN n 1 145 TYR n 1 146 GLU n 1 147 ILE n 1 148 TRP n 1 149 ARG n 1 150 TYR n 1 151 THR n 1 152 ASP n 1 153 GLY n 1 154 MET n 1 155 ARG n 1 156 VAL n 1 157 SER n 1 158 SER n 1 159 ASP n 1 160 THR n 1 161 ASN n 1 162 VAL n 1 163 TYR n 1 164 ILE n 1 165 TYR n 1 166 GLU n 1 167 LYS n 1 168 PHE n 1 169 SER n 1 170 PRO n 1 171 GLN n 1 172 GLN n 1 173 LYS n 1 174 LYS n 1 175 ALA n 1 176 LEU n 1 177 GLU n 1 178 MET n 1 179 ILE n 1 180 ARG n 1 181 THR n 1 182 ASP n 1 183 LEU n 1 184 TYR n 1 185 ASN n 1 186 PHE n 1 187 THR n 1 188 VAL n 1 189 PRO n 1 190 TYR n 1 191 GLU n 1 192 ASN n 1 193 LEU n 1 194 GLU n 1 195 TYR n 1 196 ARG n 1 197 PHE n 1 198 TYR n 1 199 LYS n 1 200 PRO n 1 201 ASP n 1 202 TRP n 1 203 VAL n 1 204 PHE n 1 205 GLY n 1 206 LEU n 1 207 GLY n 1 208 PHE n 1 209 GLN n 1 210 ALA n 1 211 LEU n 1 212 ALA n 1 213 THR n 1 214 VAL n 1 215 ARG n 1 216 TRP n 1 217 LYS n 1 218 ILE n 1 219 GLU n 1 220 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain SP14-BS69 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STREPTOCOCCUS PNEUMONIAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 406560 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PDEST _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5MCJ6_STREE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession A5MCJ6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5A0N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 220 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A5MCJ6 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 258 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 42 _struct_ref_seq.pdbx_auth_seq_align_end 258 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5A0N GLY A 1 ? UNP A5MCJ6 ? ? 'expression tag' 39 1 1 5A0N ALA A 2 ? UNP A5MCJ6 ? ? 'expression tag' 40 2 1 5A0N MET A 3 ? UNP A5MCJ6 ? ? 'expression tag' 41 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5A0N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_percent_sol 41.74 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.02 M SODIUM L-GLUTAMATE, 0.02 M DL-ALANINE, 0.02 M GLYCINE, 0.02 M DL-LYSINE, 0.02 M DL-SERINE, 0.1 M MES/IMIDAZOLE PH 6.5, 10% PEG 4000, 20% GLYCEROL ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS' _diffrn_detector.pdbx_collection_date 2012-09-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.9763 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5A0N _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.67 _reflns.d_resolution_high 1.30 _reflns.number_obs 51670 _reflns.number_all ? _reflns.percent_possible_obs 93.6 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.80 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 23.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.32 _reflns_shell.percent_possible_all 62.7 _reflns_shell.Rmerge_I_obs 0.30 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.40 _reflns_shell.pdbx_redundancy 11.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5A0N _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 48978 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 53.71 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 93.49 _refine.ls_R_factor_obs 0.12087 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.11926 _refine.ls_R_factor_R_free 0.15140 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 2631 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.978 _refine.correlation_coeff_Fo_to_Fc_free 0.968 _refine.B_iso_mean 13.149 _refine.aniso_B[1][1] -0.05 _refine.aniso_B[2][2] -0.05 _refine.aniso_B[3][3] 0.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.043 _refine.pdbx_overall_ESU_R_Free 0.042 _refine.overall_SU_ML 0.022 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.105 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1760 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 234 _refine_hist.number_atoms_total 2012 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 53.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.020 ? 1927 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1716 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.505 1.933 ? 2628 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.850 3.001 ? 3940 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.184 5.000 ? 230 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.647 24.200 ? 100 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.120 15.000 ? 301 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.382 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.100 0.200 ? 272 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 2237 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 498 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.584 1.076 ? 903 'X-RAY DIFFRACTION' ? r_mcbond_other 1.564 1.074 ? 902 'X-RAY DIFFRACTION' ? r_mcangle_it 2.072 1.625 ? 1137 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.784 1.318 ? 1024 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.391 3.000 ? 3643 'X-RAY DIFFRACTION' ? r_sphericity_free 34.003 5.000 ? 57 'X-RAY DIFFRACTION' ? r_sphericity_bonded 11.742 5.000 ? 3759 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.300 _refine_ls_shell.d_res_low 1.334 _refine_ls_shell.number_reflns_R_work 2374 _refine_ls_shell.R_factor_R_work 0.126 _refine_ls_shell.percent_reflns_obs 62.79 _refine_ls_shell.R_factor_R_free 0.159 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 135 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5A0N _struct.title 'N-terminal thioester domain of protein F2 like fibronectin-binding protein from Streptococcus pneumoniae' _struct.pdbx_descriptor 'PROTEIN F2 LIKE FIBRONECTIN-BINDING PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5A0N _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'CELL ADHESION, SURFACE-ASSOCIATED PROTEIN, GRAM-POSITIVE, ADHESIN, INTERNAL THIOESTER, THIOESTER DOMAIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 66 ? LYS A 70 ? PHE A 104 LYS A 108 5 ? 5 HELX_P HELX_P2 2 ASN A 82 ? HIS A 94 ? ASN A 120 HIS A 132 1 ? 13 HELX_P HELX_P3 3 ASN A 101 ? ASN A 103 ? ASN A 139 ASN A 141 5 ? 3 HELX_P HELX_P4 4 GLN A 104 ? ASP A 119 ? GLN A 142 ASP A 157 1 ? 16 HELX_P HELX_P5 5 ASP A 122 ? GLY A 129 ? ASP A 160 GLY A 167 1 ? 8 HELX_P HELX_P6 6 ASP A 131 ? GLY A 153 ? ASP A 169 GLY A 191 1 ? 23 HELX_P HELX_P7 7 ASN A 161 ? GLU A 166 ? ASN A 199 GLU A 204 1 ? 6 HELX_P HELX_P8 8 SER A 169 ? LEU A 183 ? SER A 207 LEU A 221 1 ? 15 HELX_P HELX_P9 9 PRO A 189 ? GLU A 191 ? PRO A 227 GLU A 229 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 2 ? AC ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TYR A 19 ? SER A 21 ? TYR A 57 SER A 59 AA 2 VAL A 41 ? THR A 43 ? VAL A 79 THR A 81 AA 3 ASN A 49 ? ASP A 51 ? ASN A 87 ASP A 89 AB 1 ILE A 25 ? GLU A 26 ? ILE A 63 GLU A 64 AB 2 THR A 35 ? TYR A 36 ? THR A 73 TYR A 74 AC 1 PHE A 55 ? CYS A 56 ? PHE A 93 CYS A 94 AC 2 LEU A 211 ? TRP A 216 ? LEU A 249 TRP A 254 AC 3 LEU A 193 ? PRO A 200 ? LEU A 231 PRO A 238 AC 4 TYR A 75 ? VAL A 78 ? TYR A 113 VAL A 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 20 ? N TYR A 58 O ILE A 42 ? O ILE A 80 AA 2 3 O VAL A 41 ? O VAL A 79 N SER A 50 ? N SER A 88 AB 1 2 N GLU A 26 ? N GLU A 64 O THR A 35 ? O THR A 73 AC 1 2 N PHE A 55 ? N PHE A 93 O ALA A 212 ? O ALA A 250 AC 2 3 N ARG A 215 ? N ARG A 253 O GLU A 194 ? O GLU A 232 AC 3 4 N LYS A 199 ? N LYS A 237 O THR A 76 ? O THR A 114 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE MES A 1256' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 1257' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLN A 24 ? GLN A 62 . ? 1_555 ? 2 AC1 11 ILE A 25 ? ILE A 63 . ? 1_555 ? 3 AC1 11 LYS A 27 ? LYS A 65 . ? 7_555 ? 4 AC1 11 ASN A 31 ? ASN A 69 . ? 7_555 ? 5 AC1 11 GLN A 32 ? GLN A 70 . ? 7_555 ? 6 AC1 11 PHE A 33 ? PHE A 71 . ? 7_555 ? 7 AC1 11 TRP A 148 ? TRP A 186 . ? 1_555 ? 8 AC1 11 MET A 154 ? MET A 192 . ? 1_555 ? 9 AC1 11 TYR A 163 ? TYR A 201 . ? 1_555 ? 10 AC1 11 HOH D . ? HOH A 2017 . ? 1_555 ? 11 AC1 11 HOH D . ? HOH A 2233 . ? 1_555 ? 12 AC2 5 HIS A 47 ? HIS A 85 . ? 3_545 ? 13 AC2 5 ARG A 149 ? ARG A 187 . ? 1_555 ? 14 AC2 5 ARG A 180 ? ARG A 218 . ? 1_555 ? 15 AC2 5 HOH D . ? HOH A 2161 . ? 1_555 ? 16 AC2 5 HOH D . ? HOH A 2234 . ? 1_555 ? # _database_PDB_matrix.entry_id 5A0N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5A0N _atom_sites.fract_transf_matrix[1][1] 0.016706 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016706 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008220 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 39 ? ? ? A . n A 1 2 ALA 2 40 ? ? ? A . n A 1 3 MET 3 41 ? ? ? A . n A 1 4 GLY 4 42 42 GLY GLY A . n A 1 5 GLY 5 43 43 GLY GLY A . n A 1 6 PHE 6 44 44 PHE PHE A . n A 1 7 PRO 7 45 45 PRO PRO A . n A 1 8 ASN 8 46 46 ASN ASN A . n A 1 9 ASP 9 47 47 ASP ASP A . n A 1 10 ALA 10 48 48 ALA ALA A . n A 1 11 LYS 11 49 49 LYS LYS A . n A 1 12 GLY 12 50 50 GLY GLY A . n A 1 13 ILE 13 51 51 ILE ILE A . n A 1 14 SER 14 52 52 SER SER A . n A 1 15 GLY 15 53 53 GLY GLY A . n A 1 16 ASN 16 54 54 ASN ASN A . n A 1 17 GLY 17 55 55 GLY GLY A . n A 1 18 LYS 18 56 56 LYS LYS A . n A 1 19 TYR 19 57 57 TYR TYR A . n A 1 20 TYR 20 58 58 TYR TYR A . n A 1 21 SER 21 59 59 SER SER A . n A 1 22 LEU 22 60 60 LEU LEU A . n A 1 23 GLY 23 61 61 GLY GLY A . n A 1 24 GLN 24 62 62 GLN GLN A . n A 1 25 ILE 25 63 63 ILE ILE A . n A 1 26 GLU 26 64 64 GLU GLU A . n A 1 27 LYS 27 65 65 LYS LYS A . n A 1 28 LEU 28 66 66 LEU LEU A . n A 1 29 TYR 29 67 67 TYR TYR A . n A 1 30 SER 30 68 68 SER SER A . n A 1 31 ASN 31 69 69 ASN ASN A . n A 1 32 GLN 32 70 70 GLN GLN A . n A 1 33 PHE 33 71 71 PHE PHE A . n A 1 34 ALA 34 72 72 ALA ALA A . n A 1 35 THR 35 73 73 THR THR A . n A 1 36 TYR 36 74 74 TYR TYR A . n A 1 37 ASN 37 75 75 ASN ASN A . n A 1 38 ASN 38 76 76 ASN ASN A . n A 1 39 LEU 39 77 77 LEU LEU A . n A 1 40 THR 40 78 78 THR THR A . n A 1 41 VAL 41 79 79 VAL VAL A . n A 1 42 ILE 42 80 80 ILE ILE A . n A 1 43 THR 43 81 81 THR THR A . n A 1 44 SER 44 82 82 SER SER A . n A 1 45 ASP 45 83 83 ASP ASP A . n A 1 46 THR 46 84 84 THR THR A . n A 1 47 HIS 47 85 85 HIS HIS A . n A 1 48 GLU 48 86 86 GLU GLU A . n A 1 49 ASN 49 87 87 ASN ASN A . n A 1 50 SER 50 88 88 SER SER A . n A 1 51 ASP 51 89 89 ASP ASP A . n A 1 52 ASN 52 90 90 ASN ASN A . n A 1 53 PHE 53 91 91 PHE PHE A . n A 1 54 ALA 54 92 92 ALA ALA A . n A 1 55 PHE 55 93 93 PHE PHE A . n A 1 56 CYS 56 94 94 CYS CYS A . n A 1 57 LEU 57 95 95 LEU LEU A . n A 1 58 ALA 58 96 96 ALA ALA A . n A 1 59 ASN 59 97 97 ASN ASN A . n A 1 60 GLY 60 98 98 GLY GLY A . n A 1 61 LYS 61 99 99 LYS LYS A . n A 1 62 ARG 62 100 100 ARG ARG A . n A 1 63 PHE 63 101 101 PHE PHE A . n A 1 64 PRO 64 102 102 PRO PRO A . n A 1 65 SER 65 103 103 SER SER A . n A 1 66 PHE 66 104 104 PHE PHE A . n A 1 67 THR 67 105 105 THR THR A . n A 1 68 ASP 68 106 106 ASP ASP A . n A 1 69 GLU 69 107 107 GLU GLU A . n A 1 70 LYS 70 108 108 LYS LYS A . n A 1 71 PRO 71 109 109 PRO PRO A . n A 1 72 LYS 72 110 110 LYS LYS A . n A 1 73 GLY 73 111 111 GLY GLY A . n A 1 74 ILE 74 112 112 ILE ILE A . n A 1 75 TYR 75 113 113 TYR TYR A . n A 1 76 THR 76 114 114 THR THR A . n A 1 77 LEU 77 115 115 LEU LEU A . n A 1 78 VAL 78 116 116 VAL VAL A . n A 1 79 LYS 79 117 117 LYS LYS A . n A 1 80 ASP 80 118 118 ASP ASP A . n A 1 81 ILE 81 119 119 ILE ILE A . n A 1 82 ASN 82 120 120 ASN ASN A . n A 1 83 LYS 83 121 121 LYS LYS A . n A 1 84 GLU 84 122 122 GLU GLU A . n A 1 85 GLN 85 123 123 GLN GLN A . n A 1 86 TYR 86 124 124 TYR TYR A . n A 1 87 THR 87 125 125 THR THR A . n A 1 88 LYS 88 126 126 LYS LYS A . n A 1 89 LEU 89 127 127 LEU LEU A . n A 1 90 LEU 90 128 128 LEU LEU A . n A 1 91 LYS 91 129 129 LYS LYS A . n A 1 92 GLU 92 130 130 GLU GLU A . n A 1 93 ASN 93 131 131 ASN ASN A . n A 1 94 HIS 94 132 132 HIS HIS A . n A 1 95 LYS 95 133 133 LYS LYS A . n A 1 96 TRP 96 134 134 TRP TRP A . n A 1 97 SER 97 135 135 SER SER A . n A 1 98 SER 98 136 136 SER SER A . n A 1 99 ILE 99 137 137 ILE ILE A . n A 1 100 PRO 100 138 138 PRO PRO A . n A 1 101 ASN 101 139 139 ASN ASN A . n A 1 102 LEU 102 140 140 LEU LEU A . n A 1 103 ASN 103 141 141 ASN ASN A . n A 1 104 GLN 104 142 142 GLN GLN A . n A 1 105 ALA 105 143 143 ALA ALA A . n A 1 106 TRP 106 144 144 TRP TRP A . n A 1 107 ASP 107 145 145 ASP ASP A . n A 1 108 THR 108 146 146 THR THR A . n A 1 109 PHE 109 147 147 PHE PHE A . n A 1 110 SER 110 148 148 SER SER A . n A 1 111 ARG 111 149 149 ARG ARG A . n A 1 112 LEU 112 150 150 LEU LEU A . n A 1 113 SER 113 151 151 SER SER A . n A 1 114 TYR 114 152 152 TYR TYR A . n A 1 115 MET 115 153 153 MET MET A . n A 1 116 TYR 116 154 154 TYR TYR A . n A 1 117 LEU 117 155 155 LEU LEU A . n A 1 118 LYS 118 156 156 LYS LYS A . n A 1 119 ASP 119 157 157 ASP ASP A . n A 1 120 PRO 120 158 158 PRO PRO A . n A 1 121 THR 121 159 159 THR THR A . n A 1 122 ASP 122 160 160 ASP ASP A . n A 1 123 ILE 123 161 161 ILE ILE A . n A 1 124 VAL 124 162 162 VAL VAL A . n A 1 125 LYS 125 163 163 LYS LYS A . n A 1 126 ARG 126 164 164 ARG ARG A . n A 1 127 ALA 127 165 165 ALA ALA A . n A 1 128 TRP 128 166 166 TRP TRP A . n A 1 129 GLY 129 167 167 GLY GLY A . n A 1 130 THR 130 168 168 THR THR A . n A 1 131 ASP 131 169 169 ASP ASP A . n A 1 132 LEU 132 170 170 LEU LEU A . n A 1 133 ASN 133 171 171 ASN ASN A . n A 1 134 THR 134 172 172 THR THR A . n A 1 135 ALA 135 173 173 ALA ALA A . n A 1 136 ARG 136 174 174 ARG ARG A . n A 1 137 THR 137 175 175 THR THR A . n A 1 138 TYR 138 176 176 TYR TYR A . n A 1 139 PHE 139 177 177 PHE PHE A . n A 1 140 HIS 140 178 178 HIS HIS A . n A 1 141 GLN 141 179 179 GLN GLN A . n A 1 142 VAL 142 180 180 VAL VAL A . n A 1 143 ILE 143 181 181 ILE ILE A . n A 1 144 GLN 144 182 182 GLN GLN A . n A 1 145 TYR 145 183 183 TYR TYR A . n A 1 146 GLU 146 184 184 GLU GLU A . n A 1 147 ILE 147 185 185 ILE ILE A . n A 1 148 TRP 148 186 186 TRP TRP A . n A 1 149 ARG 149 187 187 ARG ARG A . n A 1 150 TYR 150 188 188 TYR TYR A . n A 1 151 THR 151 189 189 THR THR A . n A 1 152 ASP 152 190 190 ASP ASP A . n A 1 153 GLY 153 191 191 GLY GLY A . n A 1 154 MET 154 192 192 MET MET A . n A 1 155 ARG 155 193 193 ARG ARG A . n A 1 156 VAL 156 194 194 VAL VAL A . n A 1 157 SER 157 195 195 SER SER A . n A 1 158 SER 158 196 196 SER SER A . n A 1 159 ASP 159 197 197 ASP ASP A . n A 1 160 THR 160 198 198 THR THR A . n A 1 161 ASN 161 199 199 ASN ASN A . n A 1 162 VAL 162 200 200 VAL VAL A . n A 1 163 TYR 163 201 201 TYR TYR A . n A 1 164 ILE 164 202 202 ILE ILE A . n A 1 165 TYR 165 203 203 TYR TYR A . n A 1 166 GLU 166 204 204 GLU GLU A . n A 1 167 LYS 167 205 205 LYS LYS A . n A 1 168 PHE 168 206 206 PHE PHE A . n A 1 169 SER 169 207 207 SER SER A . n A 1 170 PRO 170 208 208 PRO PRO A . n A 1 171 GLN 171 209 209 GLN GLN A . n A 1 172 GLN 172 210 210 GLN GLN A . n A 1 173 LYS 173 211 211 LYS LYS A . n A 1 174 LYS 174 212 212 LYS LYS A . n A 1 175 ALA 175 213 213 ALA ALA A . n A 1 176 LEU 176 214 214 LEU LEU A . n A 1 177 GLU 177 215 215 GLU GLU A . n A 1 178 MET 178 216 216 MET MET A . n A 1 179 ILE 179 217 217 ILE ILE A . n A 1 180 ARG 180 218 218 ARG ARG A . n A 1 181 THR 181 219 219 THR THR A . n A 1 182 ASP 182 220 220 ASP ASP A . n A 1 183 LEU 183 221 221 LEU LEU A . n A 1 184 TYR 184 222 222 TYR TYR A . n A 1 185 ASN 185 223 223 ASN ASN A . n A 1 186 PHE 186 224 224 PHE PHE A . n A 1 187 THR 187 225 225 THR THR A . n A 1 188 VAL 188 226 226 VAL VAL A . n A 1 189 PRO 189 227 227 PRO PRO A . n A 1 190 TYR 190 228 228 TYR TYR A . n A 1 191 GLU 191 229 229 GLU GLU A . n A 1 192 ASN 192 230 230 ASN ASN A . n A 1 193 LEU 193 231 231 LEU LEU A . n A 1 194 GLU 194 232 232 GLU GLU A . n A 1 195 TYR 195 233 233 TYR TYR A . n A 1 196 ARG 196 234 234 ARG ARG A . n A 1 197 PHE 197 235 235 PHE PHE A . n A 1 198 TYR 198 236 236 TYR TYR A . n A 1 199 LYS 199 237 237 LYS LYS A . n A 1 200 PRO 200 238 238 PRO PRO A . n A 1 201 ASP 201 239 239 ASP ASP A . n A 1 202 TRP 202 240 240 TRP TRP A . n A 1 203 VAL 203 241 241 VAL VAL A . n A 1 204 PHE 204 242 242 PHE PHE A . n A 1 205 GLY 205 243 243 GLY GLY A . n A 1 206 LEU 206 244 244 LEU LEU A . n A 1 207 GLY 207 245 245 GLY GLY A . n A 1 208 PHE 208 246 246 PHE PHE A . n A 1 209 GLN 209 247 247 GLN GLN A . n A 1 210 ALA 210 248 248 ALA ALA A . n A 1 211 LEU 211 249 249 LEU LEU A . n A 1 212 ALA 212 250 250 ALA ALA A . n A 1 213 THR 213 251 251 THR THR A . n A 1 214 VAL 214 252 252 VAL VAL A . n A 1 215 ARG 215 253 253 ARG ARG A . n A 1 216 TRP 216 254 254 TRP TRP A . n A 1 217 LYS 217 255 255 LYS LYS A . n A 1 218 ILE 218 256 ? ? ? A . n A 1 219 GLU 219 257 ? ? ? A . n A 1 220 PRO 220 258 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES 1 1256 1256 MES MES A . C 3 GOL 1 1257 1257 GOL GOL A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . D 4 HOH 108 2108 2108 HOH HOH A . D 4 HOH 109 2109 2109 HOH HOH A . D 4 HOH 110 2110 2110 HOH HOH A . D 4 HOH 111 2111 2111 HOH HOH A . D 4 HOH 112 2112 2112 HOH HOH A . D 4 HOH 113 2113 2113 HOH HOH A . D 4 HOH 114 2114 2114 HOH HOH A . D 4 HOH 115 2115 2115 HOH HOH A . D 4 HOH 116 2116 2116 HOH HOH A . D 4 HOH 117 2117 2117 HOH HOH A . D 4 HOH 118 2118 2118 HOH HOH A . D 4 HOH 119 2119 2119 HOH HOH A . D 4 HOH 120 2120 2120 HOH HOH A . D 4 HOH 121 2121 2121 HOH HOH A . D 4 HOH 122 2122 2122 HOH HOH A . D 4 HOH 123 2123 2123 HOH HOH A . D 4 HOH 124 2124 2124 HOH HOH A . D 4 HOH 125 2125 2125 HOH HOH A . D 4 HOH 126 2126 2126 HOH HOH A . D 4 HOH 127 2127 2127 HOH HOH A . D 4 HOH 128 2128 2128 HOH HOH A . D 4 HOH 129 2129 2129 HOH HOH A . D 4 HOH 130 2130 2130 HOH HOH A . D 4 HOH 131 2131 2131 HOH HOH A . D 4 HOH 132 2132 2132 HOH HOH A . D 4 HOH 133 2133 2133 HOH HOH A . D 4 HOH 134 2134 2134 HOH HOH A . D 4 HOH 135 2135 2135 HOH HOH A . D 4 HOH 136 2136 2136 HOH HOH A . D 4 HOH 137 2137 2137 HOH HOH A . D 4 HOH 138 2138 2138 HOH HOH A . D 4 HOH 139 2139 2139 HOH HOH A . D 4 HOH 140 2140 2140 HOH HOH A . D 4 HOH 141 2141 2141 HOH HOH A . D 4 HOH 142 2142 2142 HOH HOH A . D 4 HOH 143 2143 2143 HOH HOH A . D 4 HOH 144 2144 2144 HOH HOH A . D 4 HOH 145 2145 2145 HOH HOH A . D 4 HOH 146 2146 2146 HOH HOH A . D 4 HOH 147 2147 2147 HOH HOH A . D 4 HOH 148 2148 2148 HOH HOH A . D 4 HOH 149 2149 2149 HOH HOH A . D 4 HOH 150 2150 2150 HOH HOH A . D 4 HOH 151 2151 2151 HOH HOH A . D 4 HOH 152 2152 2152 HOH HOH A . D 4 HOH 153 2153 2153 HOH HOH A . D 4 HOH 154 2154 2154 HOH HOH A . D 4 HOH 155 2155 2155 HOH HOH A . D 4 HOH 156 2156 2156 HOH HOH A . D 4 HOH 157 2157 2157 HOH HOH A . D 4 HOH 158 2158 2158 HOH HOH A . D 4 HOH 159 2159 2159 HOH HOH A . D 4 HOH 160 2160 2160 HOH HOH A . D 4 HOH 161 2161 2161 HOH HOH A . D 4 HOH 162 2162 2162 HOH HOH A . D 4 HOH 163 2163 2163 HOH HOH A . D 4 HOH 164 2164 2164 HOH HOH A . D 4 HOH 165 2165 2165 HOH HOH A . D 4 HOH 166 2166 2166 HOH HOH A . D 4 HOH 167 2167 2167 HOH HOH A . D 4 HOH 168 2168 2168 HOH HOH A . D 4 HOH 169 2169 2169 HOH HOH A . D 4 HOH 170 2170 2170 HOH HOH A . D 4 HOH 171 2171 2171 HOH HOH A . D 4 HOH 172 2172 2172 HOH HOH A . D 4 HOH 173 2173 2173 HOH HOH A . D 4 HOH 174 2174 2174 HOH HOH A . D 4 HOH 175 2175 2175 HOH HOH A . D 4 HOH 176 2176 2176 HOH HOH A . D 4 HOH 177 2177 2177 HOH HOH A . D 4 HOH 178 2178 2178 HOH HOH A . D 4 HOH 179 2179 2179 HOH HOH A . D 4 HOH 180 2180 2180 HOH HOH A . D 4 HOH 181 2181 2181 HOH HOH A . D 4 HOH 182 2182 2182 HOH HOH A . D 4 HOH 183 2183 2183 HOH HOH A . D 4 HOH 184 2184 2184 HOH HOH A . D 4 HOH 185 2185 2185 HOH HOH A . D 4 HOH 186 2186 2186 HOH HOH A . D 4 HOH 187 2187 2187 HOH HOH A . D 4 HOH 188 2188 2188 HOH HOH A . D 4 HOH 189 2189 2189 HOH HOH A . D 4 HOH 190 2190 2190 HOH HOH A . D 4 HOH 191 2191 2191 HOH HOH A . D 4 HOH 192 2192 2192 HOH HOH A . D 4 HOH 193 2193 2193 HOH HOH A . D 4 HOH 194 2194 2194 HOH HOH A . D 4 HOH 195 2195 2195 HOH HOH A . D 4 HOH 196 2196 2196 HOH HOH A . D 4 HOH 197 2197 2197 HOH HOH A . D 4 HOH 198 2198 2198 HOH HOH A . D 4 HOH 199 2199 2199 HOH HOH A . D 4 HOH 200 2200 2200 HOH HOH A . D 4 HOH 201 2201 2201 HOH HOH A . D 4 HOH 202 2202 2202 HOH HOH A . D 4 HOH 203 2203 2203 HOH HOH A . D 4 HOH 204 2204 2204 HOH HOH A . D 4 HOH 205 2205 2205 HOH HOH A . D 4 HOH 206 2206 2206 HOH HOH A . D 4 HOH 207 2207 2207 HOH HOH A . D 4 HOH 208 2208 2208 HOH HOH A . D 4 HOH 209 2209 2209 HOH HOH A . D 4 HOH 210 2210 2210 HOH HOH A . D 4 HOH 211 2211 2211 HOH HOH A . D 4 HOH 212 2212 2212 HOH HOH A . D 4 HOH 213 2213 2213 HOH HOH A . D 4 HOH 214 2214 2214 HOH HOH A . D 4 HOH 215 2215 2215 HOH HOH A . D 4 HOH 216 2216 2216 HOH HOH A . D 4 HOH 217 2217 2217 HOH HOH A . D 4 HOH 218 2218 2218 HOH HOH A . D 4 HOH 219 2219 2219 HOH HOH A . D 4 HOH 220 2220 2220 HOH HOH A . D 4 HOH 221 2221 2221 HOH HOH A . D 4 HOH 222 2222 2222 HOH HOH A . D 4 HOH 223 2223 2223 HOH HOH A . D 4 HOH 224 2224 2224 HOH HOH A . D 4 HOH 225 2225 2225 HOH HOH A . D 4 HOH 226 2226 2226 HOH HOH A . D 4 HOH 227 2227 2227 HOH HOH A . D 4 HOH 228 2228 2228 HOH HOH A . D 4 HOH 229 2229 2229 HOH HOH A . D 4 HOH 230 2230 2230 HOH HOH A . D 4 HOH 231 2231 2231 HOH HOH A . D 4 HOH 232 2232 2232 HOH HOH A . D 4 HOH 233 2233 2233 HOH HOH A . D 4 HOH 234 2234 2234 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2026 ? D HOH . 2 1 A HOH 2027 ? D HOH . 3 1 A HOH 2056 ? D HOH . 4 1 A HOH 2058 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-06-03 2 'Structure model' 1 1 2015-06-10 3 'Structure model' 1 2 2017-03-22 4 'Structure model' 1 3 2019-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 4 'Structure model' pdbx_validate_close_contact 4 4 'Structure model' struct_conn # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0073 ? 1 MOSFLM 'data reduction' . ? 2 Aimless 'data scaling' . ? 3 PHENIX phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 94 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 CD _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLN _pdbx_validate_close_contact.auth_seq_id_2 247 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.72 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 253 ? ? CZ A ARG 253 ? ? NH1 A ARG 253 ? ? 123.93 120.30 3.63 0.50 N 2 1 NE A ARG 253 ? ? CZ A ARG 253 ? ? NH2 A ARG 253 ? ? 115.72 120.30 -4.58 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 62 ? ? -88.51 -91.85 2 1 PHE A 104 ? ? -145.41 39.32 3 1 ASN A 223 ? A -100.37 47.71 4 1 ASN A 223 ? B -100.72 42.95 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2059 ? 7.05 . 2 1 O ? A HOH 2089 ? 5.91 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 49 ? CE ? A LYS 11 CE 2 1 Y 1 A LYS 49 ? NZ ? A LYS 11 NZ 3 1 Y 1 A LYS 117 ? CE ? A LYS 79 CE 4 1 Y 1 A LYS 117 ? NZ ? A LYS 79 NZ 5 1 Y 1 A LYS 126 ? CE ? A LYS 88 CE 6 1 Y 1 A LYS 126 ? NZ ? A LYS 88 NZ 7 1 Y 1 A LYS 129 ? CD ? A LYS 91 CD 8 1 Y 1 A LYS 129 ? CE ? A LYS 91 CE 9 1 Y 1 A LYS 129 ? NZ ? A LYS 91 NZ 10 1 Y 1 A LYS 133 ? CG ? A LYS 95 CG 11 1 Y 1 A LYS 133 ? CD ? A LYS 95 CD 12 1 Y 1 A LYS 133 ? CE ? A LYS 95 CE 13 1 Y 1 A LYS 133 ? NZ ? A LYS 95 NZ 14 1 Y 1 A LYS 156 ? CE ? A LYS 118 CE 15 1 Y 1 A LYS 156 ? NZ ? A LYS 118 NZ 16 1 Y 1 A LYS 163 ? CE ? A LYS 125 CE 17 1 Y 1 A LYS 163 ? NZ ? A LYS 125 NZ 18 1 Y 1 A GLU 229 ? CD ? A GLU 191 CD 19 1 Y 1 A GLU 229 ? OE1 ? A GLU 191 OE1 20 1 Y 1 A GLU 229 ? OE2 ? A GLU 191 OE2 21 1 Y 1 A LYS 237 ? CD ? A LYS 199 CD 22 1 Y 1 A LYS 237 ? CE ? A LYS 199 CE 23 1 Y 1 A LYS 237 ? NZ ? A LYS 199 NZ 24 1 Y 1 A GLN 247 ? NE2 ? A GLN 209 NE2 25 1 Y 1 A LYS 255 ? NZ ? A LYS 217 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 39 ? A GLY 1 2 1 Y 1 A ALA 40 ? A ALA 2 3 1 Y 1 A MET 41 ? A MET 3 4 1 Y 1 A ILE 256 ? A ILE 218 5 1 Y 1 A GLU 257 ? A GLU 219 6 1 Y 1 A PRO 258 ? A PRO 220 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 3 GLYCEROL GOL 4 water HOH #