HEADER CELL ADHESION 21-APR-15 5A0N TITLE N-TERMINAL THIOESTER DOMAIN OF PROTEIN F2 LIKE FIBRONECTIN-BINDING TITLE 2 PROTEIN FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN F2 LIKE FIBRONECTIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIOESTER DOMAIN, RESIDUES 42-258; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: INTERNAL THIOESTER LINKAGE BETWEEN CYS94 AND GLN247 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 406560; SOURCE 4 STRAIN: SP14-BS69; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST KEYWDS CELL ADHESION, SURFACE-ASSOCIATED PROTEIN, GRAM-POSITIVE, ADHESIN, KEYWDS 2 INTERNAL THIOESTER, THIOESTER DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WALDEN,J.M.EDWARDS,A.M.DZIEWULSKA,S.-Y.KAN,U.SCHWARZ-LINEK, AUTHOR 2 M.J.BANFIELD REVDAT 4 30-OCT-19 5A0N 1 REMARK LINK REVDAT 3 22-MAR-17 5A0N 1 JRNL REVDAT 2 10-JUN-15 5A0N 1 JRNL REVDAT 1 03-JUN-15 5A0N 0 JRNL AUTH M.WALDEN,J.M.EDWARDS,A.M.DZIEWULSKA,R.BERGMANN,G.SAALBACH, JRNL AUTH 2 S.Y.KAN,O.K.MILLER,M.WECKENER,R.J.JACKSON,S.L.SHIRRAN, JRNL AUTH 3 C.H.BOTTING,G.J.FLORENCE,M.ROHDE,M.J.BANFIELD, JRNL AUTH 4 U.SCHWARZ-LINEK JRNL TITL AN INTERNAL THIOESTER IN A PATHOGEN SURFACE PROTEIN MEDIATES JRNL TITL 2 COVALENT HOST BINDING. JRNL REF ELIFE V. 4 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26032562 JRNL DOI 10.7554/ELIFE.06638 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 48978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.1260 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.1590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1927 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1716 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2628 ; 1.505 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3940 ; 0.850 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 6.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;32.647 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 301 ;11.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2237 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 498 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 903 ; 1.584 ; 1.076 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 902 ; 1.564 ; 1.074 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1137 ; 2.072 ; 1.625 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1024 ; 2.784 ; 1.318 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3643 ; 2.391 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 57 ;34.003 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3759 ;11.742 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5A0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51670 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 23.90 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M SODIUM L-GLUTAMATE, 0.02 M DL REMARK 280 -ALANINE, 0.02 M GLYCINE, 0.02 M DL-LYSINE, 0.02 M DL-SERINE, REMARK 280 0.1 M MES/IMIDAZOLE PH 6.5, 10% PEG 4000, 20% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.83000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.93000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.41500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.93000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.24500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.41500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.24500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2026 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2027 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2056 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2058 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 39 REMARK 465 ALA A 40 REMARK 465 MET A 41 REMARK 465 ILE A 256 REMARK 465 GLU A 257 REMARK 465 PRO A 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 49 CE NZ REMARK 470 LYS A 117 CE NZ REMARK 470 LYS A 126 CE NZ REMARK 470 LYS A 129 CD CE NZ REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 156 CE NZ REMARK 470 LYS A 163 CE NZ REMARK 470 GLU A 229 CD OE1 OE2 REMARK 470 LYS A 237 CD CE NZ REMARK 470 GLN A 247 NE2 REMARK 470 LYS A 255 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 94 CD GLN A 247 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 62 -91.85 -88.51 REMARK 500 PHE A 104 39.32 -145.41 REMARK 500 ASN A 223 47.71 -100.37 REMARK 500 ASN A 223 42.95 -100.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2059 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A2089 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1257 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A0D RELATED DB: PDB REMARK 900 N-TERMINAL THIOESTER DOMAIN OF SURFACE PROTEIN FROM CLOSTRIDIUM REMARK 900 PERFRINGENS, CYS138ALA MUTANT REMARK 900 RELATED ID: 5A0G RELATED DB: PDB REMARK 900 N-TERMINAL THIOESTER DOMAIN OF SURFACE PROTEIN FROM CLOSTRIDIUM REMARK 900 PERFRINGENS REMARK 900 RELATED ID: 5A0L RELATED DB: PDB REMARK 900 N-TERMINAL THIOESTER DOMAIN OF FIBRONECTIN-BINDING PROTEIN SFBI REMARK 900 FROM STREPTOCOCCUS PYOGENES DBREF 5A0N A 42 258 UNP A5MCJ6 A5MCJ6_STREE 42 258 SEQADV 5A0N GLY A 39 UNP A5MCJ6 EXPRESSION TAG SEQADV 5A0N ALA A 40 UNP A5MCJ6 EXPRESSION TAG SEQADV 5A0N MET A 41 UNP A5MCJ6 EXPRESSION TAG SEQRES 1 A 220 GLY ALA MET GLY GLY PHE PRO ASN ASP ALA LYS GLY ILE SEQRES 2 A 220 SER GLY ASN GLY LYS TYR TYR SER LEU GLY GLN ILE GLU SEQRES 3 A 220 LYS LEU TYR SER ASN GLN PHE ALA THR TYR ASN ASN LEU SEQRES 4 A 220 THR VAL ILE THR SER ASP THR HIS GLU ASN SER ASP ASN SEQRES 5 A 220 PHE ALA PHE CYS LEU ALA ASN GLY LYS ARG PHE PRO SER SEQRES 6 A 220 PHE THR ASP GLU LYS PRO LYS GLY ILE TYR THR LEU VAL SEQRES 7 A 220 LYS ASP ILE ASN LYS GLU GLN TYR THR LYS LEU LEU LYS SEQRES 8 A 220 GLU ASN HIS LYS TRP SER SER ILE PRO ASN LEU ASN GLN SEQRES 9 A 220 ALA TRP ASP THR PHE SER ARG LEU SER TYR MET TYR LEU SEQRES 10 A 220 LYS ASP PRO THR ASP ILE VAL LYS ARG ALA TRP GLY THR SEQRES 11 A 220 ASP LEU ASN THR ALA ARG THR TYR PHE HIS GLN VAL ILE SEQRES 12 A 220 GLN TYR GLU ILE TRP ARG TYR THR ASP GLY MET ARG VAL SEQRES 13 A 220 SER SER ASP THR ASN VAL TYR ILE TYR GLU LYS PHE SER SEQRES 14 A 220 PRO GLN GLN LYS LYS ALA LEU GLU MET ILE ARG THR ASP SEQRES 15 A 220 LEU TYR ASN PHE THR VAL PRO TYR GLU ASN LEU GLU TYR SEQRES 16 A 220 ARG PHE TYR LYS PRO ASP TRP VAL PHE GLY LEU GLY PHE SEQRES 17 A 220 GLN ALA LEU ALA THR VAL ARG TRP LYS ILE GLU PRO HET MES A1256 12 HET GOL A1257 6 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MES C6 H13 N O4 S FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *234(H2 O) HELIX 1 1 PHE A 104 LYS A 108 5 5 HELIX 2 2 ASN A 120 HIS A 132 1 13 HELIX 3 3 ASN A 139 ASN A 141 5 3 HELIX 4 4 GLN A 142 ASP A 157 1 16 HELIX 5 5 ASP A 160 GLY A 167 1 8 HELIX 6 6 ASP A 169 GLY A 191 1 23 HELIX 7 7 ASN A 199 GLU A 204 1 6 HELIX 8 8 SER A 207 LEU A 221 1 15 HELIX 9 9 PRO A 227 GLU A 229 5 3 SHEET 1 AA 3 TYR A 57 SER A 59 0 SHEET 2 AA 3 VAL A 79 THR A 81 -1 O ILE A 80 N TYR A 58 SHEET 3 AA 3 ASN A 87 ASP A 89 -1 N SER A 88 O VAL A 79 SHEET 1 AB 2 ILE A 63 GLU A 64 0 SHEET 2 AB 2 THR A 73 TYR A 74 -1 O THR A 73 N GLU A 64 SHEET 1 AC 4 PHE A 93 CYS A 94 0 SHEET 2 AC 4 LEU A 249 TRP A 254 -1 O ALA A 250 N PHE A 93 SHEET 3 AC 4 LEU A 231 PRO A 238 -1 O GLU A 232 N ARG A 253 SHEET 4 AC 4 TYR A 113 VAL A 116 -1 O THR A 114 N LYS A 237 SITE 1 AC1 11 GLN A 62 ILE A 63 LYS A 65 ASN A 69 SITE 2 AC1 11 GLN A 70 PHE A 71 TRP A 186 MET A 192 SITE 3 AC1 11 TYR A 201 HOH A2017 HOH A2233 SITE 1 AC2 5 HIS A 85 ARG A 187 ARG A 218 HOH A2161 SITE 2 AC2 5 HOH A2234 CRYST1 59.860 59.860 121.660 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008220 0.00000