HEADER HYDROLASE 22-APR-15 5A0S TITLE APO-STRUCTURE OF METALLOPROTEASE ZMP1 VARIANT E143A FROM CLOSTRIDIUM TITLE 2 DIFFICILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC METALLOPROTEASE ZMP1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.24.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: WITHOUT SIGNAL PEPTIDE (MISSING AA 1-26), CLEAVED N- COMPND 8 TERMINAL HIS-TAG WITH THROMBIN, RESULTING GSH- OVERHANG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, METALLOPROTEASE, ZMP1, CLOSTRIDIUM DIFFICILE, PROLINE KEYWDS 2 SPECIFICITY EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHACHERL,C.PICHLO,I.NEUNDORF,U.BAUMANN REVDAT 4 10-JAN-24 5A0S 1 REMARK LINK REVDAT 3 06-MAR-19 5A0S 1 REMARK REVDAT 2 16-SEP-15 5A0S 1 JRNL REVDAT 1 05-AUG-15 5A0S 0 JRNL AUTH M.SCHACHERL,C.PICHLO,I.NEUNDORF,U.BAUMANN JRNL TITL STRUCTURAL BASIS OF PROLINE-PROLINE PEPTIDE BOND SPECIFICITY JRNL TITL 2 OF THE METALLOPROTEASE ZMP1 IMPLICATED IN MOTILITY OF JRNL TITL 3 CLOSTRIDIUM DIFFICILE. JRNL REF STRUCTURE V. 23 1632 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26211609 JRNL DOI 10.1016/J.STR.2015.06.018 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8645 - 4.0631 0.99 3104 164 0.1691 0.2248 REMARK 3 2 4.0631 - 3.2252 1.00 2974 157 0.1824 0.2332 REMARK 3 3 3.2252 - 2.8176 0.99 2931 155 0.2343 0.3018 REMARK 3 4 2.8176 - 2.5600 1.00 2916 153 0.2648 0.3414 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3114 REMARK 3 ANGLE : 0.629 4208 REMARK 3 CHIRALITY : 0.034 460 REMARK 3 PLANARITY : 0.002 546 REMARK 3 DIHEDRAL : 12.558 1138 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0202 69.3897 3.9513 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.3345 REMARK 3 T33: 0.1844 T12: 0.0113 REMARK 3 T13: 0.0164 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 2.9299 L22: 1.1778 REMARK 3 L33: 1.4798 L12: 0.1493 REMARK 3 L13: 0.7441 L23: 0.2495 REMARK 3 S TENSOR REMARK 3 S11: -0.1362 S12: 0.4175 S13: -0.2584 REMARK 3 S21: -0.1263 S22: 0.1912 S23: -0.0490 REMARK 3 S31: 0.2116 S32: 0.0814 S33: -0.0252 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0635 91.1213 13.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.4203 T22: 0.2195 REMARK 3 T33: 0.2829 T12: -0.0585 REMARK 3 T13: -0.0724 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.7939 L22: 3.3779 REMARK 3 L33: 0.9312 L12: -0.7652 REMARK 3 L13: 1.5875 L23: -1.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: -0.1262 S13: 0.5950 REMARK 3 S21: 0.1008 S22: -0.0808 S23: -0.1552 REMARK 3 S31: -0.1199 S32: 0.0671 S33: 0.1573 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6851 76.5235 16.1668 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.1273 REMARK 3 T33: 0.2079 T12: -0.0187 REMARK 3 T13: -0.0029 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.5410 L22: 0.5453 REMARK 3 L33: 1.5730 L12: -0.0647 REMARK 3 L13: -0.2520 L23: -0.1737 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.0594 S13: 0.0465 REMARK 3 S21: 0.0538 S22: 0.0448 S23: 0.1094 REMARK 3 S31: -0.0068 S32: -0.0589 S33: -0.0387 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6667 31.6130 8.7006 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.3099 REMARK 3 T33: 0.2528 T12: 0.0294 REMARK 3 T13: -0.0146 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 2.6699 L22: 1.6409 REMARK 3 L33: 3.3706 L12: 0.1131 REMARK 3 L13: 0.2141 L23: -0.4777 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: 0.2875 S13: -0.3924 REMARK 3 S21: -0.1273 S22: 0.1615 S23: 0.0162 REMARK 3 S31: -0.1185 S32: 0.0061 S33: -0.0295 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1261 47.9381 12.0809 REMARK 3 T TENSOR REMARK 3 T11: 0.2465 T22: 0.2575 REMARK 3 T33: 0.2220 T12: -0.0150 REMARK 3 T13: -0.0511 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.1810 L22: 1.5468 REMARK 3 L33: 0.2888 L12: 1.1202 REMARK 3 L13: 0.3806 L23: 0.6222 REMARK 3 S TENSOR REMARK 3 S11: -0.1571 S12: 0.4347 S13: 0.1217 REMARK 3 S21: -0.1194 S22: 0.2895 S23: -0.1168 REMARK 3 S31: -0.1081 S32: 0.0320 S33: -0.0996 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9374 40.7312 19.8612 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: 0.1830 REMARK 3 T33: 0.2009 T12: -0.0379 REMARK 3 T13: -0.0190 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.3796 L22: 0.9142 REMARK 3 L33: 1.4404 L12: -0.4652 REMARK 3 L13: 0.1819 L23: 0.1301 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.0318 S13: -0.0190 REMARK 3 S21: 0.0913 S22: 0.0206 S23: 0.0682 REMARK 3 S31: 0.0515 S32: -0.0007 S33: -0.0329 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER IN REMARK 200 STARTING MODEL: PDB ENTRY 5A0P REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M D/L-MALIC ACID, PH 7.0 AT 293 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.26500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.26500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 HIS B 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 41 -52.94 -128.75 REMARK 500 TRP A 103 46.56 -105.17 REMARK 500 THR A 106 -59.82 50.49 REMARK 500 THR A 109 -162.64 -120.38 REMARK 500 TYR A 178 -70.37 -123.04 REMARK 500 LEU A 196 -76.59 -63.09 REMARK 500 TYR B 178 -68.81 -126.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1221 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 88.5 REMARK 620 3 GLU A 185 OE1 84.7 97.8 REMARK 620 4 HOH A2056 O 109.8 145.5 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1221 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 142 NE2 REMARK 620 2 HIS B 146 NE2 86.6 REMARK 620 3 GLU B 185 OE1 88.0 85.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1221 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A0P RELATED DB: PDB REMARK 900 APO-STRUCTURE OF METALLOPROTEASE ZMP1 FROM CLOSTRIDIUM DIFFICILE REMARK 900 RELATED ID: 5A0R RELATED DB: PDB REMARK 900 PRODUCT PEPTIDE-BOUND STRUCTURE OF METALLOPROTEASE ZMP1 VARIANT REMARK 900 E143A FROM CLOSTRIDIUM DIFFICILE REMARK 900 RELATED ID: 5A0X RELATED DB: PDB REMARK 900 SUBSTRATE PEPTIDE-BOUND STRUCTURE OF METALLOPROTEASE ZMP1 VARIANT REMARK 900 E143AY178F FROM CLOSTRIDIUM DIFFICILE DBREF 5A0S A 27 220 UNP Q183R7 ZMP1_PEPD6 27 220 DBREF 5A0S B 27 220 UNP Q183R7 ZMP1_PEPD6 27 220 SEQADV 5A0S GLY A 23 UNP Q183R7 EXPRESSION TAG SEQADV 5A0S SER A 24 UNP Q183R7 EXPRESSION TAG SEQADV 5A0S HIS A 25 UNP Q183R7 EXPRESSION TAG SEQADV 5A0S MET A 26 UNP Q183R7 EXPRESSION TAG SEQADV 5A0S ALA A 143 UNP Q183R7 GLU 143 ENGINEERED MUTATION SEQADV 5A0S GLY B 23 UNP Q183R7 EXPRESSION TAG SEQADV 5A0S SER B 24 UNP Q183R7 EXPRESSION TAG SEQADV 5A0S HIS B 25 UNP Q183R7 EXPRESSION TAG SEQADV 5A0S MET B 26 UNP Q183R7 EXPRESSION TAG SEQADV 5A0S ALA B 143 UNP Q183R7 GLU 143 ENGINEERED MUTATION SEQRES 1 A 198 GLY SER HIS MET ASP SER THR THR ILE GLN GLN ASN LYS SEQRES 2 A 198 ASP THR LEU SER GLN ILE VAL VAL PHE PRO THR GLY ASN SEQRES 3 A 198 TYR ASP LYS ASN GLU ALA ASN ALA MET VAL ASN ARG LEU SEQRES 4 A 198 ALA ASN ILE ASP GLY LYS TYR LEU ASN ALA LEU LYS GLN SEQRES 5 A 198 ASN ASN LEU LYS ILE LYS LEU LEU SER GLY LYS LEU THR SEQRES 6 A 198 ASP GLU LYS GLU TYR ALA TYR LEU LYS GLY VAL VAL PRO SEQRES 7 A 198 LYS GLY TRP GLU GLY THR GLY LYS THR TRP ASP ASP VAL SEQRES 8 A 198 PRO GLY LEU GLY GLY SER THR VAL ALA LEU ARG ILE GLY SEQRES 9 A 198 PHE SER ASN LYS GLY LYS GLY HIS ASP ALA ILE ASN LEU SEQRES 10 A 198 GLU LEU HIS ALA THR ALA HIS ALA ILE ASP HIS ILE VAL SEQRES 11 A 198 LEU ASN ASP ILE SER LYS SER ALA GLN PHE LYS GLN ILE SEQRES 12 A 198 PHE ALA LYS GLU GLY ARG SER LEU GLY ASN VAL ASN TYR SEQRES 13 A 198 LEU GLY VAL TYR PRO GLU GLU PHE PHE ALA GLU SER PHE SEQRES 14 A 198 ALA TYR TYR TYR LEU ASN GLN ASP THR ASN SER LYS LEU SEQRES 15 A 198 LYS SER ALA CYS PRO GLN THR TYR SER PHE LEU GLN ASN SEQRES 16 A 198 LEU ALA LYS SEQRES 1 B 198 GLY SER HIS MET ASP SER THR THR ILE GLN GLN ASN LYS SEQRES 2 B 198 ASP THR LEU SER GLN ILE VAL VAL PHE PRO THR GLY ASN SEQRES 3 B 198 TYR ASP LYS ASN GLU ALA ASN ALA MET VAL ASN ARG LEU SEQRES 4 B 198 ALA ASN ILE ASP GLY LYS TYR LEU ASN ALA LEU LYS GLN SEQRES 5 B 198 ASN ASN LEU LYS ILE LYS LEU LEU SER GLY LYS LEU THR SEQRES 6 B 198 ASP GLU LYS GLU TYR ALA TYR LEU LYS GLY VAL VAL PRO SEQRES 7 B 198 LYS GLY TRP GLU GLY THR GLY LYS THR TRP ASP ASP VAL SEQRES 8 B 198 PRO GLY LEU GLY GLY SER THR VAL ALA LEU ARG ILE GLY SEQRES 9 B 198 PHE SER ASN LYS GLY LYS GLY HIS ASP ALA ILE ASN LEU SEQRES 10 B 198 GLU LEU HIS ALA THR ALA HIS ALA ILE ASP HIS ILE VAL SEQRES 11 B 198 LEU ASN ASP ILE SER LYS SER ALA GLN PHE LYS GLN ILE SEQRES 12 B 198 PHE ALA LYS GLU GLY ARG SER LEU GLY ASN VAL ASN TYR SEQRES 13 B 198 LEU GLY VAL TYR PRO GLU GLU PHE PHE ALA GLU SER PHE SEQRES 14 B 198 ALA TYR TYR TYR LEU ASN GLN ASP THR ASN SER LYS LEU SEQRES 15 B 198 LYS SER ALA CYS PRO GLN THR TYR SER PHE LEU GLN ASN SEQRES 16 B 198 LEU ALA LYS HET ZN A1221 1 HET ZN B1221 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *107(H2 O) HELIX 1 1 ASP A 27 SER A 39 1 13 HELIX 2 2 ASP A 50 ALA A 62 1 13 HELIX 3 3 ASP A 65 ASN A 75 1 11 HELIX 4 4 LYS A 85 GLU A 89 5 5 HELIX 5 5 GLU A 89 LYS A 96 5 8 HELIX 6 6 THR A 109 VAL A 113 5 5 HELIX 7 7 ASN A 138 ILE A 151 1 14 HELIX 8 8 ASP A 155 LYS A 158 5 4 HELIX 9 9 SER A 159 GLY A 170 1 12 HELIX 10 10 TYR A 182 LEU A 196 1 15 HELIX 11 11 ASN A 197 CYS A 208 1 12 HELIX 12 12 CYS A 208 ALA A 219 1 12 HELIX 13 13 SER B 28 GLN B 40 1 13 HELIX 14 14 ASP B 50 ALA B 62 1 13 HELIX 15 15 ASP B 65 ASN B 75 1 11 HELIX 16 16 LYS B 85 GLU B 89 5 5 HELIX 17 17 TYR B 92 LYS B 96 5 5 HELIX 18 18 THR B 109 VAL B 113 5 5 HELIX 19 19 ASN B 138 ILE B 151 1 14 HELIX 20 20 ASP B 155 LYS B 158 5 4 HELIX 21 21 SER B 159 GLY B 170 1 12 HELIX 22 22 TYR B 182 LEU B 196 1 15 HELIX 23 23 ASN B 197 CYS B 208 1 12 HELIX 24 24 CYS B 208 ALA B 219 1 12 SHEET 1 AA 4 VAL A 42 VAL A 43 0 SHEET 2 AA 4 ILE A 79 LEU A 82 1 O ILE A 79 N VAL A 43 SHEET 3 AA 4 VAL A 121 ARG A 124 1 O VAL A 121 N LYS A 80 SHEET 4 AA 4 GLY A 115 LEU A 116 -1 O LEU A 116 N ALA A 122 SHEET 1 BA 4 VAL B 42 VAL B 43 0 SHEET 2 BA 4 ILE B 79 LEU B 82 1 O ILE B 79 N VAL B 43 SHEET 3 BA 4 VAL B 121 ARG B 124 1 O VAL B 121 N LYS B 80 SHEET 4 BA 4 GLY B 115 LEU B 116 -1 O LEU B 116 N ALA B 122 LINK NE2 HIS A 142 ZN ZN A1221 1555 1555 2.38 LINK NE2 HIS A 146 ZN ZN A1221 1555 1555 2.20 LINK OE1 GLU A 185 ZN ZN A1221 1555 1555 2.11 LINK ZN ZN A1221 O HOH A2056 1555 1555 2.39 LINK NE2 HIS B 142 ZN ZN B1221 1555 1555 2.28 LINK NE2 HIS B 146 ZN ZN B1221 1555 1555 2.25 LINK OE1 GLU B 185 ZN ZN B1221 1555 1555 2.08 SITE 1 AC1 4 HIS A 142 HIS A 146 GLU A 185 HOH A2056 SITE 1 AC2 3 HIS B 142 HIS B 146 GLU B 185 CRYST1 43.500 72.390 118.530 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008437 0.00000 MTRIX1 1 1.000000 0.007400 0.001300 -0.00040 1 MTRIX2 1 -0.007500 0.999400 0.032400 35.19010 1 MTRIX3 1 -0.001100 -0.032400 0.999500 -2.36890 1