HEADER CELL ADHESION 18-MAY-15 5A2F TITLE TWO MEMBRANE DISTAL IGSF DOMAINS OF CD166 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD166 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TWO MEMBRANE DISTAL IGSF DOMAINS; COMPND 5 SYNONYM: ACTIVATED LEUKOCYTE CELL ADHESION MOLECULE, HUMAN CD166; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: CHO LEC 3.2.8.1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PEE14 KEYWDS CELL ADHESION, ALCAM, ACTIVATED LEUKOCYTE CELL ADHESION PROTEIN, KEYWDS 2 HUMAN EXPDTA X-RAY DIFFRACTION AUTHOR P.E.CHAPPELL,S.JOHNSON,S.M.LEA,M.H.BROWN REVDAT 5 16-OCT-24 5A2F 1 REMARK REVDAT 4 10-JAN-24 5A2F 1 HETSYN REVDAT 3 29-JUL-20 5A2F 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 19-AUG-15 5A2F 1 JRNL REVDAT 1 22-JUL-15 5A2F 0 JRNL AUTH P.E.CHAPPELL,L.I.GARNER,J.YAN,C.METCALFE,D.HATHERLEY, JRNL AUTH 2 S.JOHNSON,C.V.ROBINSON,S.M.LEA,M.H.BROWN JRNL TITL STRUCTURES OF CD6 AND ITS LIGAND CD166 GIVE INSIGHT INTO JRNL TITL 2 THEIR INTERACTION. JRNL REF STRUCTURE V. 23 1426 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26146185 JRNL DOI 10.1016/J.STR.2015.05.019 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1229 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2848 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2494 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2697 REMARK 3 BIN R VALUE (WORKING SET) : 0.2482 REMARK 3 BIN FREE R VALUE : 0.2724 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.62480 REMARK 3 B22 (A**2) : 2.62480 REMARK 3 B33 (A**2) : -5.24960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.255 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.153 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.132 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.202 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.129 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3745 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6743 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 847 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 44 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 494 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3745 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 253 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3719 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.99 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.56 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1290063813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VIA XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS VIA XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24110 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 51.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CJJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM HEPES, PH 7.5, 25% PEG REMARK 280 -2000 MME REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.52000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.16000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.78000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.16000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.26000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.16000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.16000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.78000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.16000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.16000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.26000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.52000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 CYS A 9 REMARK 465 ARG A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 PHE A 13 REMARK 465 CYS A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 ILE A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 PHE A 22 REMARK 465 ARG A 23 REMARK 465 PRO A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 GLN A 248 REMARK 465 VAL A 249 REMARK 465 THR A 250 REMARK 465 ILE A 251 REMARK 465 GLN A 252 REMARK 465 VAL A 253 REMARK 465 LEU A 254 REMARK 465 PRO A 255 REMARK 465 PRO A 256 REMARK 465 LYS A 257 REMARK 465 ASN A 258 REMARK 465 ALA A 259 REMARK 465 ILE A 260 REMARK 465 LYS A 261 REMARK 465 GLU A 262 REMARK 465 GLY A 263 REMARK 465 ASP A 264 REMARK 465 ASN A 265 REMARK 465 ILE A 266 REMARK 465 THR A 267 REMARK 465 LEU A 268 REMARK 465 LYS A 269 REMARK 465 CYS A 270 REMARK 465 LEU A 271 REMARK 465 GLY A 272 REMARK 465 ASN A 273 REMARK 465 GLY A 274 REMARK 465 ASN A 275 REMARK 465 PRO A 276 REMARK 465 PRO A 277 REMARK 465 PRO A 278 REMARK 465 GLU A 279 REMARK 465 GLU A 280 REMARK 465 PHE A 281 REMARK 465 LEU A 282 REMARK 465 PHE A 283 REMARK 465 TYR A 284 REMARK 465 LEU A 285 REMARK 465 PRO A 286 REMARK 465 GLY A 287 REMARK 465 GLN A 288 REMARK 465 PRO A 289 REMARK 465 GLU A 290 REMARK 465 GLY A 291 REMARK 465 ILE A 292 REMARK 465 ARG A 293 REMARK 465 SER A 294 REMARK 465 SER A 295 REMARK 465 ASN A 296 REMARK 465 THR A 297 REMARK 465 TYR A 298 REMARK 465 THR A 299 REMARK 465 LEU A 300 REMARK 465 THR A 301 REMARK 465 ASP A 302 REMARK 465 VAL A 303 REMARK 465 ARG A 304 REMARK 465 ARG A 305 REMARK 465 ASN A 306 REMARK 465 ALA A 307 REMARK 465 THR A 308 REMARK 465 GLY A 309 REMARK 465 ASP A 310 REMARK 465 TYR A 311 REMARK 465 LYS A 312 REMARK 465 CYS A 313 REMARK 465 SER A 314 REMARK 465 LEU A 315 REMARK 465 ILE A 316 REMARK 465 ASP A 317 REMARK 465 LYS A 318 REMARK 465 LYS A 319 REMARK 465 SER A 320 REMARK 465 MET A 321 REMARK 465 ILE A 322 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 THR A 325 REMARK 465 ALA A 326 REMARK 465 ILE A 327 REMARK 465 THR A 328 REMARK 465 VAL A 329 REMARK 465 HIS A 330 REMARK 465 TYR A 331 REMARK 465 LEU A 332 REMARK 465 ASP A 333 REMARK 465 LEU A 334 REMARK 465 SER A 335 REMARK 465 LEU A 336 REMARK 465 ASN A 337 REMARK 465 PRO A 338 REMARK 465 SER A 339 REMARK 465 GLY A 340 REMARK 465 GLU A 341 REMARK 465 VAL A 342 REMARK 465 THR A 343 REMARK 465 ARG A 344 REMARK 465 GLN A 345 REMARK 465 ILE A 346 REMARK 465 GLY A 347 REMARK 465 ASP A 348 REMARK 465 ALA A 349 REMARK 465 LEU A 350 REMARK 465 PRO A 351 REMARK 465 VAL A 352 REMARK 465 SER A 353 REMARK 465 CYS A 354 REMARK 465 THR A 355 REMARK 465 ILE A 356 REMARK 465 SER A 357 REMARK 465 ALA A 358 REMARK 465 SER A 359 REMARK 465 ARG A 360 REMARK 465 ASN A 361 REMARK 465 ALA A 362 REMARK 465 THR A 363 REMARK 465 VAL A 364 REMARK 465 VAL A 365 REMARK 465 TRP A 366 REMARK 465 MET A 367 REMARK 465 LYS A 368 REMARK 465 ASP A 369 REMARK 465 ASN A 370 REMARK 465 ILE A 371 REMARK 465 ARG A 372 REMARK 465 LEU A 373 REMARK 465 ARG A 374 REMARK 465 SER A 375 REMARK 465 SER A 376 REMARK 465 PRO A 377 REMARK 465 SER A 378 REMARK 465 PHE A 379 REMARK 465 SER A 380 REMARK 465 SER A 381 REMARK 465 LEU A 382 REMARK 465 HIS A 383 REMARK 465 TYR A 384 REMARK 465 GLN A 385 REMARK 465 ASP A 386 REMARK 465 ALA A 387 REMARK 465 GLY A 388 REMARK 465 ASN A 389 REMARK 465 TYR A 390 REMARK 465 VAL A 391 REMARK 465 CYS A 392 REMARK 465 GLU A 393 REMARK 465 THR A 394 REMARK 465 ALA A 395 REMARK 465 LEU A 396 REMARK 465 GLN A 397 REMARK 465 GLU A 398 REMARK 465 VAL A 399 REMARK 465 GLU A 400 REMARK 465 GLY A 401 REMARK 465 LEU A 402 REMARK 465 LYS A 403 REMARK 465 LYS A 404 REMARK 465 ARG A 405 REMARK 465 GLU A 406 REMARK 465 SER A 407 REMARK 465 LEU A 408 REMARK 465 THR A 409 REMARK 465 LEU A 410 REMARK 465 ILE A 411 REMARK 465 VAL A 412 REMARK 465 GLU A 413 REMARK 465 GLY A 414 REMARK 465 LYS A 415 REMARK 465 PRO A 416 REMARK 465 GLN A 417 REMARK 465 ILE A 418 REMARK 465 LYS A 419 REMARK 465 MET A 420 REMARK 465 THR A 421 REMARK 465 LYS A 422 REMARK 465 LYS A 423 REMARK 465 THR A 424 REMARK 465 ASP A 425 REMARK 465 PRO A 426 REMARK 465 SER A 427 REMARK 465 GLY A 428 REMARK 465 LEU A 429 REMARK 465 SER A 430 REMARK 465 LYS A 431 REMARK 465 THR A 432 REMARK 465 ILE A 433 REMARK 465 ILE A 434 REMARK 465 CYS A 435 REMARK 465 HIS A 436 REMARK 465 VAL A 437 REMARK 465 GLU A 438 REMARK 465 GLY A 439 REMARK 465 PHE A 440 REMARK 465 PRO A 441 REMARK 465 LYS A 442 REMARK 465 PRO A 443 REMARK 465 ALA A 444 REMARK 465 ILE A 445 REMARK 465 GLN A 446 REMARK 465 TRP A 447 REMARK 465 THR A 448 REMARK 465 ILE A 449 REMARK 465 THR A 450 REMARK 465 GLY A 451 REMARK 465 SER A 452 REMARK 465 GLY A 453 REMARK 465 SER A 454 REMARK 465 VAL A 455 REMARK 465 ILE A 456 REMARK 465 ASN A 457 REMARK 465 GLN A 458 REMARK 465 THR A 459 REMARK 465 GLU A 460 REMARK 465 GLU A 461 REMARK 465 SER A 462 REMARK 465 PRO A 463 REMARK 465 TYR A 464 REMARK 465 ILE A 465 REMARK 465 ASN A 466 REMARK 465 GLY A 467 REMARK 465 ARG A 468 REMARK 465 TYR A 469 REMARK 465 TYR A 470 REMARK 465 SER A 471 REMARK 465 LYS A 472 REMARK 465 ILE A 473 REMARK 465 ILE A 474 REMARK 465 ILE A 475 REMARK 465 SER A 476 REMARK 465 PRO A 477 REMARK 465 GLU A 478 REMARK 465 GLU A 479 REMARK 465 ASN A 480 REMARK 465 VAL A 481 REMARK 465 THR A 482 REMARK 465 LEU A 483 REMARK 465 THR A 484 REMARK 465 CYS A 485 REMARK 465 THR A 486 REMARK 465 ALA A 487 REMARK 465 GLU A 488 REMARK 465 ASN A 489 REMARK 465 GLN A 490 REMARK 465 LEU A 491 REMARK 465 GLU A 492 REMARK 465 ARG A 493 REMARK 465 THR A 494 REMARK 465 VAL A 495 REMARK 465 ASN A 496 REMARK 465 SER A 497 REMARK 465 LEU A 498 REMARK 465 ASN A 499 REMARK 465 VAL A 500 REMARK 465 SER A 501 REMARK 465 ALA A 502 REMARK 465 ILE A 503 REMARK 465 SER A 504 REMARK 465 ILE A 505 REMARK 465 PRO A 506 REMARK 465 GLU A 507 REMARK 465 HIS A 508 REMARK 465 ASP A 509 REMARK 465 GLU A 510 REMARK 465 ALA A 511 REMARK 465 ASP A 512 REMARK 465 GLU A 513 REMARK 465 ILE A 514 REMARK 465 SER A 515 REMARK 465 ASP A 516 REMARK 465 GLU A 517 REMARK 465 ASN A 518 REMARK 465 ARG A 519 REMARK 465 GLU A 520 REMARK 465 LYS A 521 REMARK 465 VAL A 522 REMARK 465 ASN A 523 REMARK 465 ASP A 524 REMARK 465 GLN A 525 REMARK 465 ALA A 526 REMARK 465 LYS A 527 REMARK 465 LEU A 528 REMARK 465 ILE A 529 REMARK 465 VAL A 530 REMARK 465 GLY A 531 REMARK 465 ILE A 532 REMARK 465 VAL A 533 REMARK 465 VAL A 534 REMARK 465 GLY A 535 REMARK 465 LEU A 536 REMARK 465 LEU A 537 REMARK 465 LEU A 538 REMARK 465 ALA A 539 REMARK 465 ALA A 540 REMARK 465 LEU A 541 REMARK 465 VAL A 542 REMARK 465 ALA A 543 REMARK 465 GLY A 544 REMARK 465 VAL A 545 REMARK 465 VAL A 546 REMARK 465 TYR A 547 REMARK 465 TRP A 548 REMARK 465 LEU A 549 REMARK 465 TYR A 550 REMARK 465 MET A 551 REMARK 465 LYS A 552 REMARK 465 LYS A 553 REMARK 465 SER A 554 REMARK 465 LYS A 555 REMARK 465 THR A 556 REMARK 465 ALA A 557 REMARK 465 SER A 558 REMARK 465 LYS A 559 REMARK 465 HIS A 560 REMARK 465 VAL A 561 REMARK 465 ASN A 562 REMARK 465 LYS A 563 REMARK 465 ASP A 564 REMARK 465 LEU A 565 REMARK 465 GLY A 566 REMARK 465 ASN A 567 REMARK 465 MET A 568 REMARK 465 GLU A 569 REMARK 465 GLU A 570 REMARK 465 ASN A 571 REMARK 465 LYS A 572 REMARK 465 LYS A 573 REMARK 465 LEU A 574 REMARK 465 GLU A 575 REMARK 465 GLU A 576 REMARK 465 ASN A 577 REMARK 465 ASN A 578 REMARK 465 HIS A 579 REMARK 465 LYS A 580 REMARK 465 THR A 581 REMARK 465 GLU A 582 REMARK 465 ALA A 583 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 52 CE MET A 52 8444 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 119 22.58 -140.09 REMARK 500 TYR A 163 119.37 -160.02 REMARK 500 PRO A 164 -172.96 -68.67 REMARK 500 ALA A 183 -50.21 -144.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2186 DISTANCE = 6.03 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A2E RELATED DB: PDB REMARK 900 EXTRACELLULAR SRCR DOMAINS OF HUMAN CD6 DBREF 5A2F A 1 583 UNP Q13740 CD166_HUMAN 1 583 SEQRES 1 A 583 MET GLU SER LYS GLY ALA SER SER CYS ARG LEU LEU PHE SEQRES 2 A 583 CYS LEU LEU ILE SER ALA THR VAL PHE ARG PRO GLY LEU SEQRES 3 A 583 GLY TRP TYR THR VAL ASN SER ALA TYR GLY ASP THR ILE SEQRES 4 A 583 ILE ILE PRO CYS ARG LEU ASP VAL PRO GLN ASN LEU MET SEQRES 5 A 583 PHE GLY LYS TRP LYS TYR GLU LYS PRO ASP GLY SER PRO SEQRES 6 A 583 VAL PHE ILE ALA PHE ARG SER SER THR LYS LYS SER VAL SEQRES 7 A 583 GLN TYR ASP ASP VAL PRO GLU TYR LYS ASP ARG LEU ASN SEQRES 8 A 583 LEU SER GLU ASN TYR THR LEU SER ILE SER ASN ALA ARG SEQRES 9 A 583 ILE SER ASP GLU LYS ARG PHE VAL CYS MET LEU VAL THR SEQRES 10 A 583 GLU ASP ASN VAL PHE GLU ALA PRO THR ILE VAL LYS VAL SEQRES 11 A 583 PHE LYS GLN PRO SER LYS PRO GLU ILE VAL SER LYS ALA SEQRES 12 A 583 LEU PHE LEU GLU THR GLU GLN LEU LYS LYS LEU GLY ASP SEQRES 13 A 583 CYS ILE SER GLU ASP SER TYR PRO ASP GLY ASN ILE THR SEQRES 14 A 583 TRP TYR ARG ASN GLY LYS VAL LEU HIS PRO LEU GLU GLY SEQRES 15 A 583 ALA VAL VAL ILE ILE PHE LYS LYS GLU MET ASP PRO VAL SEQRES 16 A 583 THR GLN LEU TYR THR MET THR SER THR LEU GLU TYR LYS SEQRES 17 A 583 THR THR LYS ALA ASP ILE GLN MET PRO PHE THR CYS SER SEQRES 18 A 583 VAL THR TYR TYR GLY PRO SER GLY GLN LYS THR ILE HIS SEQRES 19 A 583 SER GLU GLN ALA VAL PHE ASP ILE TYR TYR PRO THR GLU SEQRES 20 A 583 GLN VAL THR ILE GLN VAL LEU PRO PRO LYS ASN ALA ILE SEQRES 21 A 583 LYS GLU GLY ASP ASN ILE THR LEU LYS CYS LEU GLY ASN SEQRES 22 A 583 GLY ASN PRO PRO PRO GLU GLU PHE LEU PHE TYR LEU PRO SEQRES 23 A 583 GLY GLN PRO GLU GLY ILE ARG SER SER ASN THR TYR THR SEQRES 24 A 583 LEU THR ASP VAL ARG ARG ASN ALA THR GLY ASP TYR LYS SEQRES 25 A 583 CYS SER LEU ILE ASP LYS LYS SER MET ILE ALA SER THR SEQRES 26 A 583 ALA ILE THR VAL HIS TYR LEU ASP LEU SER LEU ASN PRO SEQRES 27 A 583 SER GLY GLU VAL THR ARG GLN ILE GLY ASP ALA LEU PRO SEQRES 28 A 583 VAL SER CYS THR ILE SER ALA SER ARG ASN ALA THR VAL SEQRES 29 A 583 VAL TRP MET LYS ASP ASN ILE ARG LEU ARG SER SER PRO SEQRES 30 A 583 SER PHE SER SER LEU HIS TYR GLN ASP ALA GLY ASN TYR SEQRES 31 A 583 VAL CYS GLU THR ALA LEU GLN GLU VAL GLU GLY LEU LYS SEQRES 32 A 583 LYS ARG GLU SER LEU THR LEU ILE VAL GLU GLY LYS PRO SEQRES 33 A 583 GLN ILE LYS MET THR LYS LYS THR ASP PRO SER GLY LEU SEQRES 34 A 583 SER LYS THR ILE ILE CYS HIS VAL GLU GLY PHE PRO LYS SEQRES 35 A 583 PRO ALA ILE GLN TRP THR ILE THR GLY SER GLY SER VAL SEQRES 36 A 583 ILE ASN GLN THR GLU GLU SER PRO TYR ILE ASN GLY ARG SEQRES 37 A 583 TYR TYR SER LYS ILE ILE ILE SER PRO GLU GLU ASN VAL SEQRES 38 A 583 THR LEU THR CYS THR ALA GLU ASN GLN LEU GLU ARG THR SEQRES 39 A 583 VAL ASN SER LEU ASN VAL SER ALA ILE SER ILE PRO GLU SEQRES 40 A 583 HIS ASP GLU ALA ASP GLU ILE SER ASP GLU ASN ARG GLU SEQRES 41 A 583 LYS VAL ASN ASP GLN ALA LYS LEU ILE VAL GLY ILE VAL SEQRES 42 A 583 VAL GLY LEU LEU LEU ALA ALA LEU VAL ALA GLY VAL VAL SEQRES 43 A 583 TYR TRP LEU TYR MET LYS LYS SER LYS THR ALA SER LYS SEQRES 44 A 583 HIS VAL ASN LYS ASP LEU GLY ASN MET GLU GLU ASN LYS SEQRES 45 A 583 LYS LEU GLU GLU ASN ASN HIS LYS THR GLU ALA MODRES 5A2F ASN A 95 ASN GLYCOSYLATION SITE MODRES 5A2F ASN A 167 ASN GLYCOSYLATION SITE HET NAG A1246 14 HET NAG A1247 14 HET EDO A1248 4 HET EDO A1249 4 HET EDO A1250 4 HET EDO A1251 4 HET EDO A1252 4 HET EDO A1253 4 HET EDO A1254 4 HET EDO A1255 4 HET EDO A1256 4 HET EDO A1257 4 HET EDO A1258 4 HET EDO A1259 4 HET EDO A1260 4 HET EDO A1261 4 HET EDO A1262 4 HET EDO A1263 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 4 EDO 16(C2 H6 O2) FORMUL 20 HOH *186(H2 O) HELIX 1 1 VAL A 83 LYS A 87 5 5 HELIX 2 2 ARG A 104 GLU A 108 5 5 HELIX 3 3 THR A 210 ILE A 214 5 5 SHEET 1 AA 6 THR A 30 ALA A 34 0 SHEET 2 AA 6 ASN A 120 PHE A 131 1 O ILE A 127 N VAL A 31 SHEET 3 AA 6 ARG A 110 THR A 117 -1 O PHE A 111 N THR A 126 SHEET 4 AA 6 LEU A 51 GLU A 59 -1 N MET A 52 O VAL A 116 SHEET 5 AA 6 PRO A 65 SER A 72 -1 O VAL A 66 N TYR A 58 SHEET 6 AA 6 VAL A 78 TYR A 80 -1 O GLN A 79 N PHE A 70 SHEET 1 AB 3 ILE A 39 ILE A 41 0 SHEET 2 AB 3 LEU A 98 ILE A 100 -1 O LEU A 98 N ILE A 41 SHEET 3 AB 3 LEU A 90 LEU A 92 -1 O ASN A 91 N SER A 99 SHEET 1 AC 4 GLU A 138 VAL A 140 0 SHEET 2 AC 4 LYS A 152 SER A 162 -1 O ASP A 156 N VAL A 140 SHEET 3 AC 4 TYR A 199 TYR A 207 -1 O TYR A 199 N SER A 162 SHEET 4 AC 4 VAL A 184 MET A 192 -1 O VAL A 185 N GLU A 206 SHEET 1 AD 2 PHE A 145 GLU A 147 0 SHEET 2 AD 2 ASP A 241 TYR A 243 1 O ASP A 241 N LEU A 146 SHEET 1 AE 4 LYS A 175 VAL A 176 0 SHEET 2 AE 4 ASN A 167 ARG A 172 -1 O ARG A 172 N LYS A 175 SHEET 3 AE 4 PHE A 218 GLY A 226 -1 O THR A 219 N TYR A 171 SHEET 4 AE 4 GLY A 229 HIS A 234 -1 O GLY A 229 N GLY A 226 SSBOND 1 CYS A 43 CYS A 113 1555 1555 2.04 SSBOND 2 CYS A 157 CYS A 220 1555 1555 2.04 LINK ND2 ASN A 95 C1 NAG A1247 1555 1555 1.43 LINK ND2 ASN A 167 C1 NAG A1246 1555 1555 1.43 CISPEP 1 TYR A 163 PRO A 164 0 -3.86 CRYST1 72.320 72.320 105.040 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009520 0.00000