HEADER VIRUS 27-MAY-15 5A32 TITLE ELECTRON CRYO-MICROSCOPY OF COWPEA MOSAIC VIRUS CONTAINING RNA-1 TITLE 2 (CPMVB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA2 POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LARGE COAT PROTEIN; COMPND 5 SYNONYM: GENOME POLYPROTEIN M, P2, COAT PROTEIN VP37, COAT PROTEIN COMPND 6 VP23, COWPEA MOSAIC VIRUS; COMPND 7 OTHER_DETAILS: WILD-TYPE VIRUS CONTAINING RNA-1; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA2 POLYPROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SMALL COAT PROTEIN N-TERMINUS PART; COMPND 12 SYNONYM: GENOME POLYPROTEIN M, P2, COAT PROTEIN VP37, COAT PROTEIN COMPND 13 VP23, COWPEA MOSAIC VIRUS; COMPND 14 OTHER_DETAILS: WILD-TYPE VIRUS CONTAINING RNA-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COWPEA MOSAIC VIRUS; SOURCE 3 ORGANISM_COMMON: CPMV; SOURCE 4 ORGANISM_TAXID: 12264; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: COWPEA MOSAIC VIRUS; SOURCE 7 ORGANISM_COMMON: CPMV; SOURCE 8 ORGANISM_TAXID: 12264 KEYWDS VIRUS, CPMV, COMOVIRIDAE, PICORNAVIRALES. EXPDTA ELECTRON MICROSCOPY AUTHOR E.L.HESKETH,Y.MESHCHERIAKOVA,K.C.DENT,P.SAXENA,R.THOMPSON, AUTHOR 2 J.J.COCKBURN,G.P.LOMONOSSOFF,N.A.RANSON REVDAT 4 08-MAY-24 5A32 1 REMARK REVDAT 3 30-AUG-17 5A32 1 REMARK REVDAT 2 19-APR-17 5A32 1 JRNL REMARK REVDAT 1 23-DEC-15 5A32 0 JRNL AUTH E.L.HESKETH,Y.MESHCHERIAKOVA,K.C.DENT,P.SAXENA,R.F.THOMPSON, JRNL AUTH 2 J.J.COCKBURN,G.P.LOMONOSSOFF,N.A.RANSON JRNL TITL MECHANISMS OF ASSEMBLY AND GENOME PACKAGING IN AN RNA VIRUS JRNL TITL 2 REVEALED BY HIGH-RESOLUTION CRYO-EM. JRNL REF NAT COMMUN V. 6 10113 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26657148 JRNL DOI 10.1038/NCOMMS10113 REMARK 2 REMARK 2 RESOLUTION. 3.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : R-FACTOR REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--EM REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.040 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.440 REMARK 3 NUMBER OF PARTICLES : 4331 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD REMARK 3 -3013. (DEPOSITION ID: 13382). REMARK 4 REMARK 4 5A32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290063783. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COWPEA MOSAIC VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.80 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-NOV-14 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 8000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 134615 REMARK 245 CALIBRATED MAGNIFICATION : 134615 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.670821 -0.688190 -0.276393 258.33837 REMARK 350 BIOMT2 2 0.162459 0.500000 -0.850651 237.25827 REMARK 350 BIOMT3 2 0.723606 0.525732 0.447213 -139.08743 REMARK 350 BIOMT1 3 0.138199 -0.951056 0.276393 306.80117 REMARK 350 BIOMT2 3 -0.425326 -0.309018 -0.850650 516.17162 REMARK 350 BIOMT3 3 0.894427 0.000002 -0.447215 110.38043 REMARK 350 BIOMT1 4 0.138199 -0.425326 0.894427 78.41446 REMARK 350 BIOMT2 4 -0.951056 -0.309018 0.000002 451.29128 REMARK 350 BIOMT3 4 0.276393 -0.850650 -0.447215 403.64749 REMARK 350 BIOMT1 5 0.670821 0.162459 0.723606 -111.19909 REMARK 350 BIOMT2 5 -0.688190 0.500000 0.525732 132.27967 REMARK 350 BIOMT3 5 -0.276393 -0.850651 0.447213 335.42863 REMARK 350 BIOMT1 6 0.447216 0.000001 0.894426 -68.21925 REMARK 350 BIOMT2 6 0.000001 -1.000000 0.000001 399.35966 REMARK 350 BIOMT3 6 0.894426 0.000001 -0.447216 110.38091 REMARK 350 BIOMT1 7 0.947214 0.162460 0.276391 -77.08945 REMARK 350 BIOMT2 7 -0.162458 -0.500000 0.850651 162.10157 REMARK 350 BIOMT3 7 0.276392 -0.850651 -0.447214 403.64773 REMARK 350 BIOMT1 8 0.861803 -0.425326 -0.276394 167.71473 REMARK 350 BIOMT2 8 0.425327 0.309017 0.850650 -116.81157 REMARK 350 BIOMT3 8 -0.276393 -0.850650 0.447214 335.42834 REMARK 350 BIOMT1 9 0.309017 -0.951057 0.000001 327.88224 REMARK 350 BIOMT2 9 0.951057 0.309017 -0.000001 -51.93128 REMARK 350 BIOMT3 9 0.000001 0.000001 1.000000 -0.00038 REMARK 350 BIOMT1 10 0.052788 -0.688190 0.723608 182.06702 REMARK 350 BIOMT2 10 0.688191 -0.500000 -0.525731 267.08009 REMARK 350 BIOMT3 10 0.723607 0.525733 0.447212 -139.08735 REMARK 350 BIOMT1 11 -1.000000 -0.000001 0.000000 399.36022 REMARK 350 BIOMT2 11 -0.000001 1.000000 0.000000 0.00031 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 399.36008 REMARK 350 BIOMT1 12 -0.670821 0.688190 0.276394 141.02158 REMARK 350 BIOMT2 12 0.162458 0.500000 -0.850651 237.25834 REMARK 350 BIOMT3 12 -0.723606 -0.525733 -0.447213 538.44741 REMARK 350 BIOMT1 13 -0.138198 0.951057 -0.276392 92.55847 REMARK 350 BIOMT2 13 -0.425327 -0.309017 -0.850650 516.17153 REMARK 350 BIOMT3 13 -0.894426 -0.000001 0.447215 288.97943 REMARK 350 BIOMT1 14 -0.138198 0.425326 -0.894427 320.94525 REMARK 350 BIOMT2 14 -0.951056 -0.309017 0.000001 451.29133 REMARK 350 BIOMT3 14 -0.276393 0.850650 0.447215 -4.28759 REMARK 350 BIOMT1 15 -0.670820 -0.162460 -0.723607 510.55917 REMARK 350 BIOMT2 15 -0.688191 0.500000 0.525731 132.27997 REMARK 350 BIOMT3 15 0.276393 0.850651 -0.447213 63.93140 REMARK 350 BIOMT1 16 -0.447216 0.000000 -0.894426 467.57902 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 399.36001 REMARK 350 BIOMT3 16 -0.894426 0.000000 0.447216 288.97901 REMARK 350 BIOMT1 17 -0.947214 -0.162459 -0.276392 476.44949 REMARK 350 BIOMT2 17 -0.162459 -0.500000 0.850651 162.10180 REMARK 350 BIOMT3 17 -0.276392 0.850651 0.447214 -4.28772 REMARK 350 BIOMT1 18 -0.861803 0.425326 0.276393 231.64563 REMARK 350 BIOMT2 18 0.425326 0.309018 0.850650 -116.81159 REMARK 350 BIOMT3 18 0.276393 0.850650 -0.447215 63.93178 REMARK 350 BIOMT1 19 -0.309018 0.951056 -0.000001 71.47804 REMARK 350 BIOMT2 19 0.951056 0.309018 -0.000001 -51.93134 REMARK 350 BIOMT3 19 -0.000001 -0.000001 -1.000000 399.36048 REMARK 350 BIOMT1 20 -0.052789 0.688190 -0.723607 217.29290 REMARK 350 BIOMT2 20 0.688190 -0.499999 -0.525732 267.08025 REMARK 350 BIOMT3 20 -0.723607 -0.525732 -0.447212 538.44732 REMARK 350 BIOMT1 21 -0.447213 -0.850652 -0.276391 514.02745 REMARK 350 BIOMT2 21 0.525730 0.000000 -0.850652 264.56042 REMARK 350 BIOMT3 21 0.723608 -0.525730 0.447213 70.86806 REMARK 350 BIOMT1 22 -0.638195 -0.262866 0.723608 235.11362 REMARK 350 BIOMT2 22 -0.262866 -0.809018 -0.525730 518.69147 REMARK 350 BIOMT3 22 0.723608 -0.525730 0.447212 70.86834 REMARK 350 BIOMT1 23 0.052788 0.688191 0.723607 -92.76848 REMARK 350 BIOMT2 23 -0.688190 -0.500000 0.525733 331.95947 REMARK 350 BIOMT3 23 0.723608 -0.525731 0.447212 70.86878 REMARK 350 BIOMT1 24 0.670821 0.688190 -0.276394 -16.49694 REMARK 350 BIOMT2 24 -0.162459 0.500000 0.850651 -37.57830 REMARK 350 BIOMT3 24 0.723607 -0.525732 0.447213 70.86876 REMARK 350 BIOMT1 25 0.361803 -0.262867 -0.894427 358.52357 REMARK 350 BIOMT2 25 0.587785 0.809017 -0.000001 -79.23321 REMARK 350 BIOMT3 25 0.723607 -0.525730 0.447214 70.86832 REMARK 350 BIOMT1 26 -0.447213 0.850651 -0.276393 174.31164 REMARK 350 BIOMT2 26 -0.525730 0.000000 0.850651 134.79964 REMARK 350 BIOMT3 26 0.723608 0.525731 0.447213 -139.08731 REMARK 350 BIOMT1 27 -0.361804 0.587784 -0.723607 299.04607 REMARK 350 BIOMT2 27 0.262866 0.809018 0.525730 -119.33145 REMARK 350 BIOMT3 27 0.894427 0.000000 -0.447214 110.38057 REMARK 350 BIOMT1 28 -0.670821 0.162458 -0.723606 445.67970 REMARK 350 BIOMT2 28 0.688190 0.500000 -0.525733 67.40051 REMARK 350 BIOMT3 28 0.276394 -0.850651 -0.447213 403.64712 REMARK 350 BIOMT1 29 -0.947214 0.162459 -0.276391 411.56983 REMARK 350 BIOMT2 29 0.162459 -0.500000 -0.850651 436.93829 REMARK 350 BIOMT3 29 -0.276391 -0.850651 0.447215 335.42793 REMARK 350 BIOMT1 30 -0.809017 0.587785 0.000002 243.85515 REMARK 350 BIOMT2 30 -0.587785 -0.809017 0.000001 478.59325 REMARK 350 BIOMT3 30 0.000002 0.000000 1.000000 -0.00039 REMARK 350 BIOMT1 31 0.447214 -0.850651 0.276392 225.04843 REMARK 350 BIOMT2 31 -0.525730 -0.000001 0.850652 134.79981 REMARK 350 BIOMT3 31 -0.723607 -0.525731 -0.447213 538.44733 REMARK 350 BIOMT1 32 0.361803 -0.587785 0.723607 100.31429 REMARK 350 BIOMT2 32 0.262866 0.809017 0.525731 -119.33152 REMARK 350 BIOMT3 32 -0.894427 0.000000 0.447214 288.97956 REMARK 350 BIOMT1 33 0.670821 -0.162459 0.723607 -46.31955 REMARK 350 BIOMT2 33 0.688190 0.500000 -0.525732 67.40015 REMARK 350 BIOMT3 33 -0.276394 0.850651 0.447213 -4.28707 REMARK 350 BIOMT1 34 0.947214 -0.162458 0.276392 -12.21010 REMARK 350 BIOMT2 34 0.162460 -0.500000 -0.850651 436.93800 REMARK 350 BIOMT3 34 0.276391 0.850651 -0.447214 63.93196 REMARK 350 BIOMT1 35 0.809018 -0.587784 -0.000002 155.50454 REMARK 350 BIOMT2 35 -0.587784 -0.809018 0.000001 478.59328 REMARK 350 BIOMT3 35 -0.000002 0.000001 -1.000000 399.36027 REMARK 350 BIOMT1 36 0.447212 0.850652 0.276392 -114.66753 REMARK 350 BIOMT2 36 0.525730 0.000001 -0.850651 264.56011 REMARK 350 BIOMT3 36 -0.723608 0.525730 -0.447213 328.49191 REMARK 350 BIOMT1 37 0.638195 0.262867 -0.723608 164.24601 REMARK 350 BIOMT2 37 -0.262866 -0.809017 -0.525731 518.69148 REMARK 350 BIOMT3 37 -0.723608 0.525730 -0.447212 328.49152 REMARK 350 BIOMT1 38 -0.052787 -0.688190 -0.723607 492.12833 REMARK 350 BIOMT2 38 -0.688190 -0.500001 0.525732 331.95986 REMARK 350 BIOMT3 38 -0.723607 0.525732 -0.447212 328.49116 REMARK 350 BIOMT1 39 -0.670820 -0.688191 0.276393 415.85721 REMARK 350 BIOMT2 39 -0.162460 0.500000 0.850651 -37.57800 REMARK 350 BIOMT3 39 -0.723607 0.525731 -0.447213 328.49133 REMARK 350 BIOMT1 40 -0.361804 0.262866 0.894427 40.83674 REMARK 350 BIOMT2 40 0.587784 0.809018 0.000000 -79.23334 REMARK 350 BIOMT3 40 -0.723607 0.525730 -0.447214 328.49179 REMARK 350 BIOMT1 41 -0.447213 0.525730 0.723608 39.51165 REMARK 350 BIOMT2 41 -0.850652 0.000000 -0.525730 474.51591 REMARK 350 BIOMT3 41 -0.276391 -0.850652 0.447213 335.42837 REMARK 350 BIOMT1 42 0.309017 0.951057 0.000001 -51.93160 REMARK 350 BIOMT2 42 -0.951057 0.309017 0.000001 327.88219 REMARK 350 BIOMT3 42 0.000001 -0.000001 1.000000 0.00000 REMARK 350 BIOMT1 43 0.361803 0.262866 -0.894427 253.54528 REMARK 350 BIOMT2 43 -0.587785 0.809017 0.000000 155.50446 REMARK 350 BIOMT3 43 0.723607 0.525731 0.447214 -139.08741 REMARK 350 BIOMT1 44 -0.361803 -0.587786 -0.723606 533.78362 REMARK 350 BIOMT2 44 -0.262867 0.809016 -0.525731 195.60288 REMARK 350 BIOMT3 44 0.894427 0.000001 -0.447214 110.38023 REMARK 350 BIOMT1 45 -0.861802 -0.425327 0.276394 401.50356 REMARK 350 BIOMT2 45 -0.425327 0.309016 -0.850650 392.76280 REMARK 350 BIOMT3 45 0.276394 -0.850650 -0.447214 403.64711 REMARK 350 BIOMT1 46 0.447214 -0.525730 -0.723607 359.84804 REMARK 350 BIOMT2 46 -0.850651 -0.000001 -0.525731 474.51604 REMARK 350 BIOMT3 46 0.276392 0.850652 -0.447213 63.93151 REMARK 350 BIOMT1 47 -0.309016 -0.951057 -0.000001 451.29145 REMARK 350 BIOMT2 47 -0.951057 0.309016 0.000001 327.88256 REMARK 350 BIOMT3 47 -0.000001 0.000001 -1.000000 399.35995 REMARK 350 BIOMT1 48 -0.361803 -0.262867 0.894427 145.81477 REMARK 350 BIOMT2 48 -0.587786 0.809016 0.000001 155.50454 REMARK 350 BIOMT3 48 -0.723606 -0.525731 -0.447214 538.44742 REMARK 350 BIOMT1 49 0.361803 0.587785 0.723607 -134.42362 REMARK 350 BIOMT2 49 -0.262867 0.809017 -0.525730 195.60254 REMARK 350 BIOMT3 49 -0.894427 -0.000001 0.447214 288.97977 REMARK 350 BIOMT1 50 0.861803 0.425327 -0.276393 -2.14378 REMARK 350 BIOMT2 50 -0.425326 0.309017 -0.850650 392.76249 REMARK 350 BIOMT3 50 -0.276394 0.850650 0.447214 -4.28719 REMARK 350 BIOMT1 51 0.447212 0.525730 -0.723608 149.89295 REMARK 350 BIOMT2 51 0.850652 0.000001 0.525730 -75.15597 REMARK 350 BIOMT3 51 0.276392 -0.850651 -0.447213 403.64751 REMARK 350 BIOMT1 52 -0.138198 -0.425327 -0.894426 490.80369 REMARK 350 BIOMT2 52 0.951057 -0.309017 -0.000001 71.47781 REMARK 350 BIOMT3 52 -0.276392 -0.850650 0.447215 335.42792 REMARK 350 BIOMT1 53 -0.809017 -0.587785 0.000002 478.59301 REMARK 350 BIOMT2 53 0.587785 -0.809017 0.000000 243.85561 REMARK 350 BIOMT3 53 0.000002 0.000001 1.000000 -0.00063 REMARK 350 BIOMT1 54 -0.638195 0.262866 0.723608 130.13565 REMARK 350 BIOMT2 54 0.262866 -0.809016 0.525731 203.75717 REMARK 350 BIOMT3 54 0.723608 0.525731 0.447212 -139.08727 REMARK 350 BIOMT1 55 0.138197 0.951057 0.276392 -73.01216 REMARK 350 BIOMT2 55 0.425327 -0.309016 0.850650 6.59717 REMARK 350 BIOMT3 55 0.894426 -0.000001 -0.447215 110.38099 REMARK 350 BIOMT1 56 -0.447213 -0.525730 0.723608 249.46736 REMARK 350 BIOMT2 56 0.850651 0.000000 0.525731 -75.15600 REMARK 350 BIOMT3 56 -0.276393 0.850651 0.447213 -4.28740 REMARK 350 BIOMT1 57 0.138197 0.425327 0.894426 -91.44355 REMARK 350 BIOMT2 57 0.951057 -0.309016 -0.000001 71.47742 REMARK 350 BIOMT3 57 0.276392 0.850650 -0.447215 63.93213 REMARK 350 BIOMT1 58 0.809016 0.587786 -0.000002 -79.23306 REMARK 350 BIOMT2 58 0.587786 -0.809016 -0.000001 243.85538 REMARK 350 BIOMT3 58 -0.000002 -0.000001 -1.000000 399.36060 REMARK 350 BIOMT1 59 0.638195 -0.262866 -0.723608 269.22435 REMARK 350 BIOMT2 59 0.262867 -0.809017 0.525730 203.75739 REMARK 350 BIOMT3 59 -0.723608 -0.525731 -0.447212 538.44727 REMARK 350 BIOMT1 60 -0.138198 -0.951056 -0.276393 472.37238 REMARK 350 BIOMT2 60 0.425326 -0.309017 0.850650 6.59752 REMARK 350 BIOMT3 60 -0.894427 0.000001 0.447215 288.97908 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 369 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 108 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 -130.97 -72.41 REMARK 500 SER A 8 -30.44 -138.68 REMARK 500 PHE A 24 105.97 -58.27 REMARK 500 ALA A 139 13.99 59.78 REMARK 500 SER B 9 54.31 -90.84 REMARK 500 ASP B 11 51.21 -104.92 REMARK 500 THR B 13 30.51 -97.91 REMARK 500 ASP B 55 55.38 -152.13 REMARK 500 VAL B 104 -39.82 -38.09 REMARK 500 SER B 109 158.88 -40.37 REMARK 500 GLN B 110 -97.57 77.12 REMARK 500 LEU B 193 -50.21 -137.68 REMARK 500 ALA B 223 -117.98 -151.20 REMARK 500 THR B 224 -85.53 -97.27 REMARK 500 GLN B 225 51.86 -115.96 REMARK 500 ALA B 320 75.90 -118.35 REMARK 500 ASP B 332 -76.21 -117.26 REMARK 500 SER B 333 148.91 179.07 REMARK 500 ASP B 364 88.98 78.08 REMARK 500 SER B 366 -81.37 -134.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3013 RELATED DB: EMDB REMARK 900 RELATED ID: 5A33 RELATED DB: PDB REMARK 900 ELECTRON CRYO-MICROSCOPY OF COWPEA MOSAIC VIRUS (CPMV) EMPTY VIRUS REMARK 900 LIKE PARTICLE (EVLP) DBREF 5A32 A 1 189 UNP P03599 POL2_CPMVS 834 1022 DBREF 5A32 B 1 369 UNP P03599 POL2_CPMVS 460 828 SEQRES 1 A 189 GLY PRO VAL CYS ALA GLU ALA SER ASP VAL TYR SER PRO SEQRES 2 A 189 CYS MET ILE ALA SER THR PRO PRO ALA PRO PHE SER ASP SEQRES 3 A 189 VAL THR ALA VAL THR PHE ASP LEU ILE ASN GLY LYS ILE SEQRES 4 A 189 THR PRO VAL GLY ASP ASP ASN TRP ASN THR HIS ILE TYR SEQRES 5 A 189 ASN PRO PRO ILE MET ASN VAL LEU ARG THR ALA ALA TRP SEQRES 6 A 189 LYS SER GLY THR ILE HIS VAL GLN LEU ASN VAL ARG GLY SEQRES 7 A 189 ALA GLY VAL LYS ARG ALA ASP TRP ASP GLY GLN VAL PHE SEQRES 8 A 189 VAL TYR LEU ARG GLN SER MET ASN PRO GLU SER TYR ASP SEQRES 9 A 189 ALA ARG THR PHE VAL ILE SER GLN PRO GLY SER ALA MET SEQRES 10 A 189 LEU ASN PHE SER PHE ASP ILE ILE GLY PRO ASN SER GLY SEQRES 11 A 189 PHE GLU PHE ALA GLU SER PRO TRP ALA ASN GLN THR THR SEQRES 12 A 189 TRP TYR LEU GLU CYS VAL ALA THR ASN PRO ARG GLN ILE SEQRES 13 A 189 GLN GLN PHE GLU VAL ASN MET ARG PHE ASP PRO ASN PHE SEQRES 14 A 189 ARG VAL ALA GLY ASN ILE LEU MET PRO PRO PHE PRO LEU SEQRES 15 A 189 SER THR GLU THR PRO PRO LEU SEQRES 1 B 369 MET GLU GLN ASN LEU PHE ALA LEU SER LEU ASP ASP THR SEQRES 2 B 369 SER SER VAL ARG GLY SER LEU LEU ASP THR LYS PHE ALA SEQRES 3 B 369 GLN THR ARG VAL LEU LEU SER LYS ALA MET ALA GLY GLY SEQRES 4 B 369 ASP VAL LEU LEU ASP GLU TYR LEU TYR ASP VAL VAL ASN SEQRES 5 B 369 GLY GLN ASP PHE ARG ALA THR VAL ALA PHE LEU ARG THR SEQRES 6 B 369 HIS VAL ILE THR GLY LYS ILE LYS VAL THR ALA THR THR SEQRES 7 B 369 ASN ILE SER ASP ASN SER GLY CYS CYS LEU MET LEU ALA SEQRES 8 B 369 ILE ASN SER GLY VAL ARG GLY LYS TYR SER THR ASP VAL SEQRES 9 B 369 TYR THR ILE CYS SER GLN ASP SER MET THR TRP ASN PRO SEQRES 10 B 369 GLY CYS LYS LYS ASN PHE SER PHE THR PHE ASN PRO ASN SEQRES 11 B 369 PRO CYS GLY ASP SER TRP SER ALA GLU MET ILE SER ARG SEQRES 12 B 369 SER ARG VAL ARG MET THR VAL ILE CYS VAL SER GLY TRP SEQRES 13 B 369 THR LEU SER PRO THR THR ASP VAL ILE ALA LYS LEU ASP SEQRES 14 B 369 TRP SER ILE VAL ASN GLU LYS CYS GLU PRO THR ILE TYR SEQRES 15 B 369 HIS LEU ALA ASP CYS GLN ASN TRP LEU PRO LEU ASN ARG SEQRES 16 B 369 TRP MET GLY LYS LEU THR PHE PRO GLN GLY VAL THR SER SEQRES 17 B 369 GLU VAL ARG ARG MET PRO LEU SER ILE GLY GLY GLY ALA SEQRES 18 B 369 GLY ALA THR GLN ALA PHE LEU ALA ASN MET PRO ASN SER SEQRES 19 B 369 TRP ILE SER MET TRP ARG TYR PHE ARG GLY GLU LEU HIS SEQRES 20 B 369 PHE GLU VAL THR LYS MET SER SER PRO TYR ILE LYS ALA SEQRES 21 B 369 THR VAL THR PHE LEU ILE ALA PHE GLY ASN LEU SER ASP SEQRES 22 B 369 ALA PHE GLY PHE TYR GLU SER PHE PRO HIS ARG ILE VAL SEQRES 23 B 369 GLN PHE ALA GLU VAL GLU GLU LYS CYS THR LEU VAL PHE SEQRES 24 B 369 SER GLN GLN GLU PHE VAL THR ALA TRP SER THR GLN VAL SEQRES 25 B 369 ASN PRO ARG THR THR LEU GLU ALA ASP GLY CYS PRO TYR SEQRES 26 B 369 LEU TYR ALA ILE ILE HIS ASP SER THR THR GLY THR ILE SEQRES 27 B 369 SER GLY ASP PHE ASN LEU GLY VAL LYS LEU VAL GLY ILE SEQRES 28 B 369 LYS ASP PHE CYS GLY ILE GLY SER ASN PRO GLY ILE ASP SEQRES 29 B 369 GLY SER ARG LEU LEU HELIX 1 1 PRO A 54 THR A 62 1 9 HELIX 2 2 LYS A 82 TRP A 86 5 5 HELIX 3 3 PRO A 137 GLN A 141 5 5 HELIX 4 4 ASN B 4 LEU B 8 5 5 HELIX 5 5 TYR B 48 ASN B 52 5 5 HELIX 6 6 ALA B 58 THR B 65 1 8 HELIX 7 7 ASP B 103 SER B 109 1 7 HELIX 8 8 SER B 137 SER B 144 1 8 HELIX 9 9 ASN B 230 SER B 237 1 8 HELIX 10 10 PHE B 277 PHE B 281 5 5 HELIX 11 11 SER B 300 PHE B 304 5 5 SHEET 1 AA 5 ASN A 48 ILE A 51 0 SHEET 2 AA 5 SER A 12 SER A 18 -1 O ILE A 16 N HIS A 50 SHEET 3 AA 5 GLN A 158 PHE A 165 -1 O PHE A 159 N ALA A 17 SHEET 4 AA 5 ALA A 63 ARG A 77 -1 O HIS A 71 N ARG A 164 SHEET 5 AA 5 ALA A 116 ILE A 124 -1 O ALA A 116 N VAL A 76 SHEET 1 AB 5 ASN A 48 ILE A 51 0 SHEET 2 AB 5 SER A 12 SER A 18 -1 O ILE A 16 N HIS A 50 SHEET 3 AB 5 GLN A 158 PHE A 165 -1 O PHE A 159 N ALA A 17 SHEET 4 AB 5 ALA A 63 ARG A 77 -1 O HIS A 71 N ARG A 164 SHEET 5 AB 5 GLU A 132 PHE A 133 -1 O GLU A 132 N LYS A 66 SHEET 1 AC 2 ALA A 116 ILE A 124 0 SHEET 2 AC 2 ALA A 63 ARG A 77 -1 O GLY A 68 N ILE A 124 SHEET 1 AD 6 ASN A 48 ILE A 51 0 SHEET 2 AD 6 SER A 12 SER A 18 -1 O ILE A 16 N HIS A 50 SHEET 3 AD 6 GLN A 158 PHE A 165 -1 O PHE A 159 N ALA A 17 SHEET 4 AD 6 ALA A 63 ARG A 77 -1 O HIS A 71 N ARG A 164 SHEET 5 AD 6 ARG A 170 LEU A 176 -1 O ARG A 170 N SER A 67 SHEET 6 AD 6 GLY B 95 VAL B 96 -1 O GLY B 95 N LEU A 176 SHEET 1 BA 2 TYR B 182 HIS B 183 0 SHEET 2 BA 2 ARG A 170 LEU A 176 -1 O VAL A 171 N TYR B 182 SHEET 1 AE 6 ASN A 48 ILE A 51 0 SHEET 2 AE 6 SER A 12 SER A 18 -1 O ILE A 16 N HIS A 50 SHEET 3 AE 6 GLN A 158 PHE A 165 -1 O PHE A 159 N ALA A 17 SHEET 4 AE 6 ALA A 63 ARG A 77 -1 O HIS A 71 N ARG A 164 SHEET 5 AE 6 ARG A 170 LEU A 176 -1 O ARG A 170 N SER A 67 SHEET 6 AE 6 TYR B 182 HIS B 183 -1 O TYR B 182 N VAL A 171 SHEET 1 AF 5 LYS A 38 PRO A 41 0 SHEET 2 AF 5 THR A 28 ASP A 33 -1 O THR A 31 N THR A 40 SHEET 3 AF 5 TYR A 145 ALA A 150 -1 O LEU A 146 N PHE A 32 SHEET 4 AF 5 VAL A 90 ARG A 95 -1 O PHE A 91 N VAL A 149 SHEET 5 AF 5 ASP A 104 ILE A 110 -1 N ALA A 105 O LEU A 94 SHEET 1 AG 3 PHE A 180 PRO A 181 0 SHEET 2 AG 3 ALA B 226 LEU B 228 -1 O PHE B 227 N PHE A 180 SHEET 3 AG 3 ALA B 221 GLY B 222 -1 O ALA B 221 N LEU B 228 SHEET 1 BB 4 ALA B 26 LEU B 32 0 SHEET 2 BB 4 VAL B 164 LYS B 176 -1 O VAL B 164 N LEU B 32 SHEET 3 BB 4 GLY B 70 ALA B 76 -1 O LYS B 71 N VAL B 173 SHEET 4 BB 4 PHE B 123 PHE B 127 -1 O PHE B 123 N ALA B 76 SHEET 1 BC 4 ASP B 40 TYR B 46 0 SHEET 2 BC 4 ARG B 147 SER B 154 -1 O MET B 148 N GLU B 45 SHEET 3 BC 4 CYS B 87 ASN B 93 -1 O CYS B 87 N VAL B 153 SHEET 4 BC 4 ASP B 111 TRP B 115 -1 O ASP B 111 N ILE B 92 SHEET 1 BD 4 CYS B 187 PHE B 202 0 SHEET 2 BD 4 PHE B 342 ILE B 357 -1 O PHE B 342 N PHE B 202 SHEET 3 BD 4 TYR B 241 LYS B 252 -1 O TYR B 241 N ILE B 357 SHEET 4 BD 4 LYS B 294 CYS B 295 -1 O CYS B 295 N VAL B 250 SHEET 1 BE 4 CYS B 187 PHE B 202 0 SHEET 2 BE 4 PHE B 342 ILE B 357 -1 O PHE B 342 N PHE B 202 SHEET 3 BE 4 TYR B 241 LYS B 252 -1 O TYR B 241 N ILE B 357 SHEET 4 BE 4 VAL B 298 PHE B 299 -1 O PHE B 299 N LEU B 246 SHEET 1 BF 2 LYS B 294 CYS B 295 0 SHEET 2 BF 2 TYR B 241 LYS B 252 -1 O VAL B 250 N CYS B 295 SHEET 1 BG 4 CYS B 187 PHE B 202 0 SHEET 2 BG 4 PHE B 342 ILE B 357 -1 O PHE B 342 N PHE B 202 SHEET 3 BG 4 TYR B 241 LYS B 252 -1 O TYR B 241 N ILE B 357 SHEET 4 BG 4 TRP B 308 SER B 309 -1 O TRP B 308 N PHE B 242 SHEET 1 BH 4 VAL B 210 PRO B 214 0 SHEET 2 BH 4 PRO B 324 ILE B 330 -1 O LEU B 326 N MET B 213 SHEET 3 BH 4 THR B 261 PHE B 268 -1 O THR B 263 N ILE B 329 SHEET 4 BH 4 ARG B 284 GLN B 287 -1 O ARG B 284 N PHE B 264 CISPEP 1 GLY A 1 PRO A 2 0 9.77 CISPEP 2 ALA A 22 PRO A 23 0 5.46 CISPEP 3 ARG A 77 GLY A 78 0 22.70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000