HEADER TRANSFERASE 28-MAY-15 5A3A TITLE CRYSTAL STRUCTURE OF THE ADP-RIBOSYLATING SIRTUIN (SIRTM) TITLE 2 FROM STREPTOCOCCUS PYOGENES (APO FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIR2 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP-RIBOSYLATING SIRTUIN, SIRTM; COMPND 5 EC: 2.4.2.30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 160491; SOURCE 4 STRAIN: MANFREDO; SOURCE 5 VARIANT: SEROTYPE M5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA(DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS TRANSFERASE, P-RIBOSYLTRANSFERASE, METALLOPROTEIN, NAD-DEPENDENT, KEYWDS 2 LIPOYLATION, REGULATORY ENZYME, ROSSMANN FOLD, ZINC BINDING, ROS KEYWDS 3 DEFENSE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.M.RACK,R.MORRA,E.BARKAUSKAITE,R.KRAEHENBUEHL,A.ARIZA,Y.QU, AUTHOR 2 M.ORTMAYER,O.LEIDECKER,D.R.CAMERON,I.MATIC,A.Y.PELEG,D.LEYS, AUTHOR 3 A.TRAVEN,I.AHEL REVDAT 1 29-JUL-15 5A3A 0 JRNL AUTH J.G.RACK,R.MORRA,E.BARKAUSKAITE,R.KRAEHENBUEHL,A.ARIZA,Y.QU, JRNL AUTH 2 M.ORTMAYER,O.LEIDECKER,D.R.CAMERON,I.MATIC,A.Y.PELEG,D.LEYS, JRNL AUTH 3 A.TRAVEN,I.AHEL JRNL TITL IDENTIFICATION OF A CLASS OF PROTEIN ADP-RIBOSYLATING JRNL TITL 2 SIRTUINS IN MICROBIAL PATHOGENS. JRNL REF MOL.CELL V. 59 309 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 26166706 JRNL DOI 10.1016/J.MOLCEL.2015.06.013 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.28 REMARK 3 NUMBER OF REFLECTIONS : 34287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.15205 REMARK 3 R VALUE (WORKING SET) : 0.14956 REMARK 3 FREE R VALUE : 0.19998 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.540 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.580 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2371 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.251 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.315 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2427 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.183 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05 REMARK 3 B22 (A**2) : 0.95 REMARK 3 B33 (A**2) : -0.73 REMARK 3 B12 (A**2) : -0.39 REMARK 3 B13 (A**2) : -0.57 REMARK 3 B23 (A**2) : -0.04 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2549 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2387 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3456 ; 1.421 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5506 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 6.183 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.581 ;24.815 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;13.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2920 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 626 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1192 ; 1.593 ; 1.633 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1176 ; 1.506 ; 1.588 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1486 ; 2.307 ; 2.413 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1357 ; 2.265 ; 1.935 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1957 ; 3.595 ; 2.781 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS AND U REMARK 3 VALUES WERE REFINED INDIVIDUALLY REMARK 4 REMARK 4 5A3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-15. REMARK 100 THE PDBE ID CODE IS EBI-63884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE MONOCHROMATOR REMARK 200 OPTICS : TORROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 2M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.54 REMARK 200 RESOLUTION RANGE LOW (A) : 34.81 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 3.8 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.8 REMARK 200 R MERGE FOR SHELL (I) : 0.55 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: SAD DATA NOT DEPOSITED. SAD STRUCTURE WAS USED TO REMARK 200 SUBSEQUENTLY SOLVE NATIVE STRUCTURES VIA MOLECULAR REMARK 200 REPLACEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMINO ACIDS, 0.1 M BUFFER REMARK 280 SYSTEM 1 (PH 6.5), 30.00% (V/V) EDO_P8K (THESE ARE REMARK 280 COMPONENTS OF THE MORPHEUS SCREEN FROM MOLECULAR REMARK 280 DIMENSIONS) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 7 REMARK 465 PRO A 8 REMARK 465 GLN A 9 REMARK 465 LYS A 10 REMARK 465 SER A 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 155 O HOH A 2139 2.16 REMARK 500 O HOH A 2067 O HOH A 2068 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2169 O HOH A 2234 2554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 91 -49.84 -142.34 REMARK 500 ASP A 156 85.98 -164.74 REMARK 500 ASN A 190 96.04 -61.58 REMARK 500 ILE A 238 -56.20 -124.17 REMARK 500 HIS A 261 58.76 -103.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1293 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 183 SG REMARK 620 2 CYS A 145 SG 99.6 REMARK 620 3 CYS A 180 SG 116.7 110.8 REMARK 620 4 CYS A 149 SG 109.9 113.4 106.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A35 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLYCINE CLEAVAGE PROTEIN H-LIKE ( REMARK 900 GCVH-L) FROM STREPTOCOCCUS PYOGENES REMARK 900 RELATED ID: 5A3B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ADP-RIBOSYLATING SIRTUIN (SIRTM REMARK 900 ) FROM STREPTOCOCCUS PYOGENES IN COMPLEX WITH ADP- REMARK 900 RIBOSE REMARK 900 RELATED ID: 5A3C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ADP-RIBOSYLATING SIRTUIN (SIRTM REMARK 900 ) FROM STREPTOCOCCUS PYOGENES (APO FORM) REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL RESIDUES (MGHHHHHHGG) ARE A CLONED HIS-TAG DBREF 5A3A A 1 293 UNP Q1JGN6 Q1JGN6_STRPD 1 293 SEQADV 5A3A MET A -9 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A GLY A -8 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A HIS A -7 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A HIS A -6 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A HIS A -5 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A HIS A -4 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A HIS A -3 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A HIS A -2 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A GLY A -1 UNP Q1JGN6 EXPRESSION TAG SEQADV 5A3A GLY A 0 UNP Q1JGN6 EXPRESSION TAG SEQRES 1 A 303 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY MET SER ASN SEQRES 2 A 303 TRP THR THR TYR PRO GLN LYS ASN LEU THR GLN ALA GLU SEQRES 3 A 303 GLN LEU ALA GLN LEU ILE LYS GLU ALA ASP ALA LEU VAL SEQRES 4 A 303 VAL GLY ILE GLY ALA GLY MET SER ALA ALA ASP GLY PHE SEQRES 5 A 303 THR TYR ILE GLY PRO ARG PHE GLU THR ALA PHE PRO ASP SEQRES 6 A 303 PHE ILE ALA LYS TYR GLN PHE LEU ASP MET LEU GLN ALA SEQRES 7 A 303 SER LEU PHE ASP PHE GLU ASP TRP GLN GLU TYR TRP ALA SEQRES 8 A 303 PHE GLN SER ARG PHE VAL ALA LEU ASN TYR LEU ASP GLN SEQRES 9 A 303 PRO VAL GLY GLN SER TYR LEU ASP LEU LYS GLU ILE LEU SEQRES 10 A 303 GLU THR LYS ASP TYR HIS ILE ILE THR THR ASN ALA ASP SEQRES 11 A 303 ASN ALA PHE TRP VAL ALA GLY TYR ASP PRO HIS ASN ILE SEQRES 12 A 303 PHE HIS ILE GLN GLY GLU TYR GLY LEU TRP GLN CYS SER SEQRES 13 A 303 GLN HIS CYS HIS GLN GLN THR TYR LYS ASP ASP THR VAL SEQRES 14 A 303 ILE ARG GLN MET ILE ALA GLU GLN LYS ASN MET LYS VAL SEQRES 15 A 303 PRO GLY GLN LEU ILE PRO HIS CYS PRO GLU CYS GLU ALA SEQRES 16 A 303 PRO PHE GLU ILE ASN LYS ARG ASN GLU GLU LYS GLY MET SEQRES 17 A 303 VAL GLU ASP ALA ASP PHE HIS ALA GLN LYS ALA ARG TYR SEQRES 18 A 303 GLU ALA PHE LEU SER GLU HIS LYS GLU GLY LYS VAL LEU SEQRES 19 A 303 TYR LEU GLU ILE GLY VAL GLY HIS THR THR PRO GLN PHE SEQRES 20 A 303 ILE LYS HIS PRO PHE TRP LYS ARG VAL SER GLU ASN PRO SEQRES 21 A 303 ASN ALA LEU PHE VAL THR LEU ASN HIS LYS HIS TYR ARG SEQRES 22 A 303 ILE PRO LEU SER ILE ARG ARG GLN SER LEU GLU LEU THR SEQRES 23 A 303 GLU HIS ILE ALA GLN LEU ILE SER ALA THR LYS THR ILE SEQRES 24 A 303 TYR GLN LYS SER HET ZN A1293 1 HET GLY A1294 5 HET GLY A1295 5 HET GLY A1296 5 HET GLY A1297 5 HET GLY A1298 5 HET EDO A1299 4 HET EDO A1300 4 HET EDO A1301 4 HET EDO A1302 4 HET EDO A1303 4 HET EDO A1304 4 HET EDO A1305 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM GLY GLYCINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 7(C2 H6 O2) FORMUL 3 ZN ZN 2+ FORMUL 5 GLY 5(C2 H5 N O2) FORMUL 6 HOH *286(H2 O) HELIX 1 1 THR A 13 ALA A 25 1 13 HELIX 2 2 GLY A 33 ASP A 40 1 8 HELIX 3 3 GLY A 46 PHE A 53 1 8 HELIX 4 4 PHE A 53 GLN A 61 1 9 HELIX 5 5 ASP A 64 PHE A 71 1 8 HELIX 6 6 ASP A 75 TYR A 91 1 17 HELIX 7 7 GLY A 97 GLU A 108 1 12 HELIX 8 8 ASN A 121 ALA A 126 1 6 HELIX 9 9 ASP A 129 HIS A 131 5 3 HELIX 10 10 ASP A 156 GLN A 167 1 12 HELIX 11 11 PRO A 173 ILE A 177 5 5 HELIX 12 12 ASP A 201 HIS A 218 1 18 HELIX 13 13 ILE A 238 ASN A 249 1 12 HELIX 14 14 PRO A 265 ARG A 270 5 6 HELIX 15 15 HIS A 278 LYS A 292 1 15 SHEET 1 AA 6 ILE A 133 HIS A 135 0 SHEET 2 AA 6 TYR A 112 THR A 116 1 O ILE A 114 N PHE A 134 SHEET 3 AA 6 ALA A 27 ILE A 32 1 O LEU A 28 N HIS A 113 SHEET 4 AA 6 VAL A 223 ILE A 228 1 O LEU A 224 N VAL A 29 SHEET 5 AA 6 LEU A 253 LEU A 257 1 O LEU A 253 N TYR A 225 SHEET 6 AA 6 SER A 272 LEU A 275 1 O LEU A 273 N THR A 256 SHEET 1 AB 2 TRP A 143 CYS A 145 0 SHEET 2 AB 2 PHE A 187 ILE A 189 -1 O GLU A 188 N GLN A 144 LINK ZN ZN A1293 SG CYS A 183 1555 1555 2.31 LINK ZN ZN A1293 SG CYS A 145 1555 1555 2.38 LINK ZN ZN A1293 SG CYS A 180 1555 1555 2.30 LINK ZN ZN A1293 SG CYS A 149 1555 1555 2.33 SITE 1 AC1 4 CYS A 145 CYS A 149 CYS A 180 CYS A 183 SITE 1 AC2 8 TYR A 60 GLN A 61 GLN A 67 PHE A 71 SITE 2 AC2 8 VAL A 125 EDO A1304 HOH A2280 HOH A2281 SITE 1 AC3 3 THR A 153 TYR A 154 LYS A 155 SITE 1 AC4 4 GLU A 200 PHE A 204 LYS A 208 HOH A2197 SITE 1 AC5 4 HIS A 259 LYS A 260 GLN A 291 HOH A2249 SITE 1 AC6 3 TRP A 243 ARG A 263 EDO A1302 SITE 1 AC7 6 TYR A 44 ASN A 118 ALA A 119 ASP A 120 SITE 2 AC7 6 TYR A 140 EDO A1303 SITE 1 AC8 5 ASP A 72 PHE A 73 ASP A 75 HOH A2284 SITE 2 AC8 5 HOH A2285 SITE 1 AC9 5 ALA A 88 LEU A 89 ASP A 93 HOH A2089 SITE 2 AC9 5 HOH A2286 SITE 1 BC1 7 ASP A 26 LYS A 110 ASP A 111 ARG A 263 SITE 2 BC1 7 GLY A1298 HOH A2017 HOH A2254 SITE 1 BC2 3 THR A 117 EDO A1299 HOH A2025 SITE 1 BC3 6 GLN A 67 TRP A 124 GLY A 127 TYR A 128 SITE 2 BC3 6 GLY A1294 HOH A2065 SITE 1 BC4 3 ASP A 129 ASN A 132 GLU A 194 CRYST1 34.160 41.510 51.230 99.87 94.63 90.77 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029274 0.000393 0.002476 0.00000 SCALE2 0.000000 0.024093 0.004234 0.00000 SCALE3 0.000000 0.000000 0.019884 0.00000