data_5A3D # _entry.id 5A3D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5A3D PDBE EBI-63886 WWPDB D_1290063886 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5A3D _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-05-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuper, J.' 1 'Koch, S.C.' 2 'Gasteiger, K.L.' 3 'Wichlein, N.' 4 'Schneider, S.' 5 'Kisker, C.' 6 'Carell, T.' 7 # _citation.id primary _citation.title 'Structural Insights Into the Recognition of Cisplatin and Aaf-Dg Lesion by Rad14 (Xpa).' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 112 _citation.page_first 8272 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26100901 _citation.pdbx_database_id_DOI 10.1073/PNAS.1508509112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Koch, S.C.' 1 primary 'Kuper, J.' 2 primary 'Gasteiger, K.L.' 3 primary 'Simon, N.' 4 primary 'Strasser, R.' 5 primary 'Eisen, D.' 6 primary 'Geiger, S.' 7 primary 'Schneider, S.' 8 primary 'Kisker, C.' 9 primary 'Carell, T.' 10 # _cell.entry_id 5A3D _cell.length_a 53.727 _cell.length_b 53.727 _cell.length_c 130.551 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A3D _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA REPAIR PROTEIN RAD14' 13673.528 2 ? ? 'DNA BINDING DOMAIN' ? 2 polymer syn ;5'-D(*DTP*CP*TP*CP*TP*AP*C 8FGP*TP*CP*AP*TP*CP*DAP*CP)-3' ; 4701.177 1 ? ? ? ? 3 polymer syn ;5'-D(*DG 5IUP*GP*A 5IUP*GP*AP*CP*G 5IUP*AP*GP*AP*DGP*AP)-3' ; 5033.682 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 5 water nat water 18.015 43 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name RAD14 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;APKCIECHINIEMDPVLHDVFKLQVCKQCSKEHPEKYALLTKTECKEDYFLTDPELNDEDLFHRLEKPNPHSGTFARMQL FVRCEVEAFAFKKWGGEEGLDEEWQRREEGKAHRR ; ;APKCIECHINIEMDPVLHDVFKLQVCKQCSKEHPEKYALLTKTECKEDYFLTDPELNDEDLFHRLEKPNPHSGTFARMQL FVRCEVEAFAFKKWGGEEGLDEEWQRREEGKAHRR ; A,B ? 2 polydeoxyribonucleotide no yes '(DT)(DC)(DT)(DC)(DT)(DA)(DC)(8FG)(DT)(DC)(DA)(DT)(DC)(DA)(DC)' TCTCTACGTCATCAC C ? 3 polydeoxyribonucleotide no yes '(DG)(5IU)(DG)(DA)(5IU)(DG)(DA)(DC)(DG)(5IU)(DA)(DG)(DA)(DG)(DA)' GUGAUGACGUAGAGA D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 LYS n 1 4 CYS n 1 5 ILE n 1 6 GLU n 1 7 CYS n 1 8 HIS n 1 9 ILE n 1 10 ASN n 1 11 ILE n 1 12 GLU n 1 13 MET n 1 14 ASP n 1 15 PRO n 1 16 VAL n 1 17 LEU n 1 18 HIS n 1 19 ASP n 1 20 VAL n 1 21 PHE n 1 22 LYS n 1 23 LEU n 1 24 GLN n 1 25 VAL n 1 26 CYS n 1 27 LYS n 1 28 GLN n 1 29 CYS n 1 30 SER n 1 31 LYS n 1 32 GLU n 1 33 HIS n 1 34 PRO n 1 35 GLU n 1 36 LYS n 1 37 TYR n 1 38 ALA n 1 39 LEU n 1 40 LEU n 1 41 THR n 1 42 LYS n 1 43 THR n 1 44 GLU n 1 45 CYS n 1 46 LYS n 1 47 GLU n 1 48 ASP n 1 49 TYR n 1 50 PHE n 1 51 LEU n 1 52 THR n 1 53 ASP n 1 54 PRO n 1 55 GLU n 1 56 LEU n 1 57 ASN n 1 58 ASP n 1 59 GLU n 1 60 ASP n 1 61 LEU n 1 62 PHE n 1 63 HIS n 1 64 ARG n 1 65 LEU n 1 66 GLU n 1 67 LYS n 1 68 PRO n 1 69 ASN n 1 70 PRO n 1 71 HIS n 1 72 SER n 1 73 GLY n 1 74 THR n 1 75 PHE n 1 76 ALA n 1 77 ARG n 1 78 MET n 1 79 GLN n 1 80 LEU n 1 81 PHE n 1 82 VAL n 1 83 ARG n 1 84 CYS n 1 85 GLU n 1 86 VAL n 1 87 GLU n 1 88 ALA n 1 89 PHE n 1 90 ALA n 1 91 PHE n 1 92 LYS n 1 93 LYS n 1 94 TRP n 1 95 GLY n 1 96 GLY n 1 97 GLU n 1 98 GLU n 1 99 GLY n 1 100 LEU n 1 101 ASP n 1 102 GLU n 1 103 GLU n 1 104 TRP n 1 105 GLN n 1 106 ARG n 1 107 ARG n 1 108 GLU n 1 109 GLU n 1 110 GLY n 1 111 LYS n 1 112 ALA n 1 113 HIS n 1 114 ARG n 1 115 ARG n 2 1 DT n 2 2 DC n 2 3 DT n 2 4 DC n 2 5 DT n 2 6 DA n 2 7 DC n 2 8 8FG n 2 9 DT n 2 10 DC n 2 11 DA n 2 12 DT n 2 13 DC n 2 14 DA n 2 15 DC n 3 1 DG n 3 2 5IU n 3 3 DG n 3 4 DA n 3 5 5IU n 3 6 DG n 3 7 DA n 3 8 DC n 3 9 DG n 3 10 5IU n 3 11 DA n 3 12 DG n 3 13 DA n 3 14 DG n 3 15 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;BAKER'S YEAST ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SACCHAROMYCES CEREVISIAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PPSG-IBA3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? 3 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RAD14_YEAST 1 ? ? P28519 ? 2 PDB 5A3D 2 ? ? 5A3D ? 3 PDB 5A3D 3 ? ? 5A3D ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5A3D A 1 ? 115 ? P28519 188 ? 302 ? 188 302 2 1 5A3D B 1 ? 115 ? P28519 188 ? 302 ? 188 302 3 2 5A3D C 1 ? 15 ? 5A3D 1 ? 15 ? 1 15 4 3 5A3D D 1 ? 15 ? 5A3D 1 ? 15 ? 1 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5IU 'DNA linking' n "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O8 P' 434.078 8FG 'DNA linking' n "N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-YL)-2-ACETYLAMINOFLUORENE" ? 'C25 H25 N6 O8 P' 568.475 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 5A3D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_percent_sol 51.72 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.18 M AMMONIUM NITRATE AND 40% 2-METHYL- 1,3,-PROPANEDIOL' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97623 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.97623 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5A3D _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 65.30 _reflns.d_resolution_high 1.80 _reflns.number_obs 34232 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.89 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.60 _reflns_shell.pdbx_redundancy 7.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5A3D _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 32435 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 53.73 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.80 _refine.ls_R_factor_obs 0.21109 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20956 _refine.ls_R_factor_R_free 0.24076 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1701 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 47.760 _refine.aniso_B[1][1] 1.26 _refine.aniso_B[2][2] 1.26 _refine.aniso_B[3][3] -2.51 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.154 _refine.pdbx_overall_ESU_R_Free 0.138 _refine.overall_SU_ML 0.105 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.424 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1875 _refine_hist.pdbx_number_atoms_nucleic_acid 618 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 2538 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 53.73 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.016 ? 3325 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 2467 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.154 1.645 ? 4961 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.734 3.013 ? 5759 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.000 5.000 ? 227 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.515 25.000 ? 104 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.742 15.000 ? 352 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.482 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.463 0.200 ? 449 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 2901 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 729 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.652 2.688 ? 914 'X-RAY DIFFRACTION' ? r_mcbond_other 1.653 2.686 ? 913 'X-RAY DIFFRACTION' ? r_mcangle_it 2.683 4.019 ? 1139 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.651 2.336 ? 2411 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 2400 _refine_ls_shell.R_factor_R_work 0.312 _refine_ls_shell.percent_reflns_obs 99.02 _refine_ls_shell.R_factor_R_free 0.347 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 121 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.003171 _struct_ncs_oper.matrix[1][2] -1.000000 _struct_ncs_oper.matrix[1][3] 0.001543 _struct_ncs_oper.matrix[2][1] -1.000000 _struct_ncs_oper.matrix[2][2] -0.003171 _struct_ncs_oper.matrix[2][3] -0.000034 _struct_ncs_oper.matrix[3][1] 0.000039 _struct_ncs_oper.matrix[3][2] -0.001543 _struct_ncs_oper.matrix[3][3] -1.000000 _struct_ncs_oper.vector[1] 26.80000 _struct_ncs_oper.vector[2] 26.88000 _struct_ncs_oper.vector[3] 65.41000 # _struct.entry_id 5A3D _struct.title 'Structural insights into the recognition of cisplatin and AAF-dG lesions by Rad14 (XPA)' _struct.pdbx_descriptor 'DNA REPAIR PROTEIN RAD14' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5A3D _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'DNA BINDING PROTEIN, XPA, RAD14, NER, AAF-DG, CISPLATIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 14 ? VAL A 20 ? ASP A 201 VAL A 207 1 ? 7 HELX_P HELX_P2 2 CYS A 26 ? HIS A 33 ? CYS A 213 HIS A 220 1 ? 8 HELX_P HELX_P3 3 HIS A 33 ? ALA A 38 ? HIS A 220 ALA A 225 1 ? 6 HELX_P HELX_P4 4 LYS A 42 ? PHE A 50 ? LYS A 229 PHE A 237 1 ? 9 HELX_P HELX_P5 5 THR A 52 ? ASN A 57 ? THR A 239 ASN A 244 1 ? 6 HELX_P HELX_P6 6 ARG A 83 ? GLY A 95 ? ARG A 270 GLY A 282 1 ? 13 HELX_P HELX_P7 7 GLY A 95 ? ARG A 114 ? GLY A 282 ARG A 301 1 ? 20 HELX_P HELX_P8 8 ASP B 14 ? VAL B 20 ? ASP B 201 VAL B 207 1 ? 7 HELX_P HELX_P9 9 CYS B 26 ? HIS B 33 ? CYS B 213 HIS B 220 1 ? 8 HELX_P HELX_P10 10 HIS B 33 ? ALA B 38 ? HIS B 220 ALA B 225 1 ? 6 HELX_P HELX_P11 11 LYS B 42 ? PHE B 50 ? LYS B 229 PHE B 237 1 ? 9 HELX_P HELX_P12 12 THR B 52 ? ASN B 57 ? THR B 239 ASN B 244 1 ? 6 HELX_P HELX_P13 13 ARG B 83 ? GLY B 95 ? ARG B 270 GLY B 282 1 ? 13 HELX_P HELX_P14 14 GLY B 95 ? ARG B 114 ? GLY B 282 ARG B 301 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 4 SG ? ? A ZN 500 A CYS 191 1_555 ? ? ? ? ? ? ? 2.423 ? metalc2 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 29 SG ? ? A ZN 500 A CYS 216 1_555 ? ? ? ? ? ? ? 2.215 ? metalc3 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 7 SG ? ? A ZN 500 A CYS 194 1_555 ? ? ? ? ? ? ? 2.440 ? metalc4 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 26 SG ? ? A ZN 500 A CYS 213 1_555 ? ? ? ? ? ? ? 2.290 ? metalc5 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 26 SG ? ? B ZN 500 B CYS 213 1_555 ? ? ? ? ? ? ? 2.314 ? metalc6 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 7 SG ? ? B ZN 500 B CYS 194 1_555 ? ? ? ? ? ? ? 2.372 ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 29 SG ? ? B ZN 500 B CYS 216 1_555 ? ? ? ? ? ? ? 2.305 ? metalc8 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 4 SG ? ? B ZN 500 B CYS 191 1_555 ? ? ? ? ? ? ? 2.396 ? covale1 covale ? ? C DC 7 "O3'" A ? ? 1_555 C 8FG 8 P A ? C DC 7 C 8FG 8 1_555 ? ? ? ? ? ? ? 1.600 ? covale2 covale ? ? C DC 7 "O3'" B ? ? 1_555 C 8FG 8 P B ? C DC 7 C 8FG 8 1_555 ? ? ? ? ? ? ? 1.620 ? covale3 covale ? ? C 8FG 8 "O3'" B ? ? 1_555 C DT 9 P B ? C 8FG 8 C DT 9 1_555 ? ? ? ? ? ? ? 1.624 ? covale4 covale ? ? C 8FG 8 "O3'" A ? ? 1_555 C DT 9 P A ? C 8FG 8 C DT 9 1_555 ? ? ? ? ? ? ? 1.618 ? covale5 covale ? ? D DG 1 "O3'" B ? ? 1_555 D 5IU 2 P B ? D DG 1 D 5IU 2 1_555 ? ? ? ? ? ? ? 1.625 ? covale6 covale ? ? D DG 1 "O3'" A ? ? 1_555 D 5IU 2 P A ? D DG 1 D 5IU 2 1_555 ? ? ? ? ? ? ? 1.592 ? covale7 covale ? ? D 5IU 2 "O3'" A ? ? 1_555 D DG 3 P A ? D 5IU 2 D DG 3 1_555 ? ? ? ? ? ? ? 1.623 ? covale8 covale ? ? D 5IU 2 "O3'" B ? ? 1_555 D DG 3 P B ? D 5IU 2 D DG 3 1_555 ? ? ? ? ? ? ? 1.622 ? covale9 covale ? ? D DA 4 "O3'" B ? ? 1_555 D 5IU 5 P B ? D DA 4 D 5IU 5 1_555 ? ? ? ? ? ? ? 1.604 ? covale10 covale ? ? D DA 4 "O3'" A ? ? 1_555 D 5IU 5 P A ? D DA 4 D 5IU 5 1_555 ? ? ? ? ? ? ? 1.625 ? covale11 covale ? ? D 5IU 5 "O3'" A ? ? 1_555 D DG 6 P A ? D 5IU 5 D DG 6 1_555 ? ? ? ? ? ? ? 1.631 ? covale12 covale ? ? D 5IU 5 "O3'" B ? ? 1_555 D DG 6 P B ? D 5IU 5 D DG 6 1_555 ? ? ? ? ? ? ? 1.634 ? covale13 covale ? ? D DG 9 "O3'" B ? ? 1_555 D 5IU 10 P B ? D DG 9 D 5IU 10 1_555 ? ? ? ? ? ? ? 1.597 ? covale14 covale ? ? D DG 9 "O3'" A ? ? 1_555 D 5IU 10 P A ? D DG 9 D 5IU 10 1_555 ? ? ? ? ? ? ? 1.582 ? covale15 covale ? ? D 5IU 10 "O3'" A ? ? 1_555 D DA 11 P A ? D 5IU 10 D DA 11 1_555 ? ? ? ? ? ? ? 1.618 ? covale16 covale ? ? D 5IU 10 "O3'" B ? ? 1_555 D DA 11 P B ? D 5IU 10 D DA 11 1_555 ? ? ? ? ? ? ? 1.611 ? hydrog1 hydrog ? ? C DC 2 N3 A ? ? 1_555 D DG 14 N1 A ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C DC 2 N3 B ? ? 1_555 D DG 14 N1 B ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DC 2 N4 A ? ? 1_555 D DG 14 O6 A ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DC 2 N4 B ? ? 1_555 D DG 14 O6 B ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DC 2 O2 A ? ? 1_555 D DG 14 N2 A ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DC 2 O2 B ? ? 1_555 D DG 14 N2 B ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DT 3 N3 A ? ? 1_555 D DA 13 N1 A ? C DT 3 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DT 3 N3 B ? ? 1_555 D DA 13 N1 B ? C DT 3 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DT 3 O4 A ? ? 1_555 D DA 13 N6 A ? C DT 3 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DT 3 O4 B ? ? 1_555 D DA 13 N6 B ? C DT 3 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DC 4 N3 A ? ? 1_555 D DG 12 N1 A ? C DC 4 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DC 4 N3 B ? ? 1_555 D DG 12 N1 B ? C DC 4 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DC 4 N4 A ? ? 1_555 D DG 12 O6 A ? C DC 4 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DC 4 N4 B ? ? 1_555 D DG 12 O6 B ? C DC 4 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DC 4 O2 A ? ? 1_555 D DG 12 N2 A ? C DC 4 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DC 4 O2 B ? ? 1_555 D DG 12 N2 B ? C DC 4 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DT 5 N3 A ? ? 1_555 D DA 11 N1 A ? C DT 5 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DT 5 N3 B ? ? 1_555 D DA 11 N1 B ? C DT 5 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DT 5 O4 A ? ? 1_555 D DA 11 N6 A ? C DT 5 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DT 5 O4 B ? ? 1_555 D DA 11 N6 B ? C DT 5 D DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DA 6 N1 A ? ? 1_555 D 5IU 10 N3 A ? C DA 6 D 5IU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DA 6 N1 B ? ? 1_555 D 5IU 10 N3 B ? C DA 6 D 5IU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DA 6 N6 A ? ? 1_555 D 5IU 10 O4 A ? C DA 6 D 5IU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DA 6 N6 B ? ? 1_555 D 5IU 10 O4 B ? C DA 6 D 5IU 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DC 7 N3 A ? ? 1_555 D DG 9 N1 A ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DC 7 N3 B ? ? 1_555 D DG 9 N1 B ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DC 7 N4 A ? ? 1_555 D DG 9 O6 A ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DC 7 N4 B ? ? 1_555 D DG 9 O6 B ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DC 7 O2 A ? ? 1_555 D DG 9 N2 A ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DC 7 O2 B ? ? 1_555 D DG 9 N2 B ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DT 9 N3 A ? ? 1_555 D DA 7 N1 A ? C DT 9 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DT 9 N3 B ? ? 1_555 D DA 7 N1 B ? C DT 9 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DT 9 O4 A ? ? 1_555 D DA 7 N6 A ? C DT 9 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C DC 10 N3 A ? ? 1_555 D DG 6 N1 A ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C DC 10 N3 B ? ? 1_555 D DG 6 N1 B ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C DC 10 N4 A ? ? 1_555 D DG 6 O6 A ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? C DC 10 N4 B ? ? 1_555 D DG 6 O6 B ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? C DC 10 O2 A ? ? 1_555 D DG 6 N2 A ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? C DC 10 O2 B ? ? 1_555 D DG 6 N2 B ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? C DA 11 N1 A ? ? 1_555 D 5IU 5 N3 A ? C DA 11 D 5IU 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? C DA 11 N1 B ? ? 1_555 D 5IU 5 N3 B ? C DA 11 D 5IU 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? C DA 11 N6 A ? ? 1_555 D 5IU 5 O4 A ? C DA 11 D 5IU 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? C DA 11 N6 B ? ? 1_555 D 5IU 5 O4 B ? C DA 11 D 5IU 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? C DT 12 N3 A ? ? 1_555 D DA 4 N1 A ? C DT 12 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? C DT 12 N3 B ? ? 1_555 D DA 4 N1 B ? C DT 12 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? C DT 12 O4 A ? ? 1_555 D DA 4 N6 A ? C DT 12 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? C DT 12 O4 B ? ? 1_555 D DA 4 N6 B ? C DT 12 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? C DC 13 N3 A ? ? 1_555 D DG 3 N1 A ? C DC 13 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? C DC 13 N3 B ? ? 1_555 D DG 3 N1 B ? C DC 13 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? C DC 13 N4 A ? ? 1_555 D DG 3 O6 A ? C DC 13 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? C DC 13 N4 B ? ? 1_555 D DG 3 O6 B ? C DC 13 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? C DC 13 O2 A ? ? 1_555 D DG 3 N2 A ? C DC 13 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? C DC 13 O2 B ? ? 1_555 D DG 3 N2 B ? C DC 13 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? C DA 14 N1 A ? ? 1_555 D 5IU 2 N3 A ? C DA 14 D 5IU 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? C DA 14 N1 B ? ? 1_555 D 5IU 2 N3 B ? C DA 14 D 5IU 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? C DA 14 N6 A ? ? 1_555 D 5IU 2 O4 A ? C DA 14 D 5IU 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? C DA 14 N6 B ? ? 1_555 D 5IU 2 O4 B ? C DA 14 D 5IU 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? BA ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 39 ? THR A 41 ? LEU A 226 THR A 228 AA 2 MET A 78 ? VAL A 82 ? MET A 265 VAL A 269 AA 3 LEU A 65 ? LYS A 67 ? LEU A 252 LYS A 254 BA 1 LEU B 39 ? THR B 41 ? LEU B 226 THR B 228 BA 2 MET B 78 ? VAL B 82 ? MET B 265 VAL B 269 BA 3 LEU B 65 ? LYS B 67 ? LEU B 252 LYS B 254 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 40 ? N LEU A 227 O PHE A 81 ? O PHE A 268 AA 2 3 N LEU A 80 ? N LEU A 267 O LEU A 65 ? O LEU A 252 BA 1 2 N LEU B 40 ? N LEU B 227 O PHE B 81 ? O PHE B 268 BA 2 3 N LEU B 80 ? N LEU B 267 O LEU B 65 ? O LEU B 252 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 500' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 4 ? CYS A 191 . ? 1_555 ? 2 AC1 5 CYS A 7 ? CYS A 194 . ? 1_555 ? 3 AC1 5 CYS A 26 ? CYS A 213 . ? 1_555 ? 4 AC1 5 CYS A 29 ? CYS A 216 . ? 1_555 ? 5 AC1 5 ARG A 77 ? ARG A 264 . ? 3_655 ? 6 AC2 4 CYS B 4 ? CYS B 191 . ? 1_555 ? 7 AC2 4 CYS B 7 ? CYS B 194 . ? 1_555 ? 8 AC2 4 CYS B 26 ? CYS B 213 . ? 1_555 ? 9 AC2 4 CYS B 29 ? CYS B 216 . ? 1_555 ? # _database_PDB_matrix.entry_id 5A3D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5A3D _atom_sites.fract_transf_matrix[1][1] 0.018613 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018613 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007660 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 188 188 ALA ALA A . n A 1 2 PRO 2 189 189 PRO PRO A . n A 1 3 LYS 3 190 190 LYS LYS A . n A 1 4 CYS 4 191 191 CYS CYS A . n A 1 5 ILE 5 192 192 ILE ILE A . n A 1 6 GLU 6 193 193 GLU GLU A . n A 1 7 CYS 7 194 194 CYS CYS A . n A 1 8 HIS 8 195 195 HIS HIS A . n A 1 9 ILE 9 196 196 ILE ILE A . n A 1 10 ASN 10 197 197 ASN ASN A . n A 1 11 ILE 11 198 198 ILE ILE A . n A 1 12 GLU 12 199 199 GLU GLU A . n A 1 13 MET 13 200 200 MET MET A . n A 1 14 ASP 14 201 201 ASP ASP A . n A 1 15 PRO 15 202 202 PRO PRO A . n A 1 16 VAL 16 203 203 VAL VAL A . n A 1 17 LEU 17 204 204 LEU LEU A . n A 1 18 HIS 18 205 205 HIS HIS A . n A 1 19 ASP 19 206 206 ASP ASP A . n A 1 20 VAL 20 207 207 VAL VAL A . n A 1 21 PHE 21 208 208 PHE PHE A . n A 1 22 LYS 22 209 209 LYS LYS A . n A 1 23 LEU 23 210 210 LEU LEU A . n A 1 24 GLN 24 211 211 GLN GLN A . n A 1 25 VAL 25 212 212 VAL VAL A . n A 1 26 CYS 26 213 213 CYS CYS A . n A 1 27 LYS 27 214 214 LYS LYS A . n A 1 28 GLN 28 215 215 GLN GLN A . n A 1 29 CYS 29 216 216 CYS CYS A . n A 1 30 SER 30 217 217 SER SER A . n A 1 31 LYS 31 218 218 LYS LYS A . n A 1 32 GLU 32 219 219 GLU GLU A . n A 1 33 HIS 33 220 220 HIS HIS A . n A 1 34 PRO 34 221 221 PRO PRO A . n A 1 35 GLU 35 222 222 GLU GLU A . n A 1 36 LYS 36 223 223 LYS LYS A . n A 1 37 TYR 37 224 224 TYR TYR A . n A 1 38 ALA 38 225 225 ALA ALA A . n A 1 39 LEU 39 226 226 LEU LEU A . n A 1 40 LEU 40 227 227 LEU LEU A . n A 1 41 THR 41 228 228 THR THR A . n A 1 42 LYS 42 229 229 LYS LYS A . n A 1 43 THR 43 230 230 THR THR A . n A 1 44 GLU 44 231 231 GLU GLU A . n A 1 45 CYS 45 232 232 CYS CYS A . n A 1 46 LYS 46 233 233 LYS LYS A . n A 1 47 GLU 47 234 234 GLU GLU A . n A 1 48 ASP 48 235 235 ASP ASP A . n A 1 49 TYR 49 236 236 TYR TYR A . n A 1 50 PHE 50 237 237 PHE PHE A . n A 1 51 LEU 51 238 238 LEU LEU A . n A 1 52 THR 52 239 239 THR THR A . n A 1 53 ASP 53 240 240 ASP ASP A . n A 1 54 PRO 54 241 241 PRO PRO A . n A 1 55 GLU 55 242 242 GLU GLU A . n A 1 56 LEU 56 243 243 LEU LEU A . n A 1 57 ASN 57 244 244 ASN ASN A . n A 1 58 ASP 58 245 245 ASP ASP A . n A 1 59 GLU 59 246 246 GLU GLU A . n A 1 60 ASP 60 247 247 ASP ASP A . n A 1 61 LEU 61 248 248 LEU LEU A . n A 1 62 PHE 62 249 249 PHE PHE A . n A 1 63 HIS 63 250 250 HIS HIS A . n A 1 64 ARG 64 251 251 ARG ARG A . n A 1 65 LEU 65 252 252 LEU LEU A . n A 1 66 GLU 66 253 253 GLU GLU A . n A 1 67 LYS 67 254 254 LYS LYS A . n A 1 68 PRO 68 255 255 PRO PRO A . n A 1 69 ASN 69 256 256 ASN ASN A . n A 1 70 PRO 70 257 257 PRO PRO A . n A 1 71 HIS 71 258 258 HIS HIS A . n A 1 72 SER 72 259 259 SER SER A . n A 1 73 GLY 73 260 260 GLY GLY A . n A 1 74 THR 74 261 261 THR THR A . n A 1 75 PHE 75 262 262 PHE PHE A . n A 1 76 ALA 76 263 263 ALA ALA A . n A 1 77 ARG 77 264 264 ARG ARG A . n A 1 78 MET 78 265 265 MET MET A . n A 1 79 GLN 79 266 266 GLN GLN A . n A 1 80 LEU 80 267 267 LEU LEU A . n A 1 81 PHE 81 268 268 PHE PHE A . n A 1 82 VAL 82 269 269 VAL VAL A . n A 1 83 ARG 83 270 270 ARG ARG A . n A 1 84 CYS 84 271 271 CYS CYS A . n A 1 85 GLU 85 272 272 GLU GLU A . n A 1 86 VAL 86 273 273 VAL VAL A . n A 1 87 GLU 87 274 274 GLU GLU A . n A 1 88 ALA 88 275 275 ALA ALA A . n A 1 89 PHE 89 276 276 PHE PHE A . n A 1 90 ALA 90 277 277 ALA ALA A . n A 1 91 PHE 91 278 278 PHE PHE A . n A 1 92 LYS 92 279 279 LYS LYS A . n A 1 93 LYS 93 280 280 LYS LYS A . n A 1 94 TRP 94 281 281 TRP TRP A . n A 1 95 GLY 95 282 282 GLY GLY A . n A 1 96 GLY 96 283 283 GLY GLY A . n A 1 97 GLU 97 284 284 GLU GLU A . n A 1 98 GLU 98 285 285 GLU GLU A . n A 1 99 GLY 99 286 286 GLY GLY A . n A 1 100 LEU 100 287 287 LEU LEU A . n A 1 101 ASP 101 288 288 ASP ASP A . n A 1 102 GLU 102 289 289 GLU GLU A . n A 1 103 GLU 103 290 290 GLU GLU A . n A 1 104 TRP 104 291 291 TRP TRP A . n A 1 105 GLN 105 292 292 GLN GLN A . n A 1 106 ARG 106 293 293 ARG ARG A . n A 1 107 ARG 107 294 294 ARG ARG A . n A 1 108 GLU 108 295 295 GLU GLU A . n A 1 109 GLU 109 296 296 GLU GLU A . n A 1 110 GLY 110 297 297 GLY GLY A . n A 1 111 LYS 111 298 298 LYS LYS A . n A 1 112 ALA 112 299 299 ALA ALA A . n A 1 113 HIS 113 300 300 HIS HIS A . n A 1 114 ARG 114 301 301 ARG ARG A . n A 1 115 ARG 115 302 ? ? ? A . n B 1 1 ALA 1 188 188 ALA ALA B . n B 1 2 PRO 2 189 189 PRO PRO B . n B 1 3 LYS 3 190 190 LYS LYS B . n B 1 4 CYS 4 191 191 CYS CYS B . n B 1 5 ILE 5 192 192 ILE ILE B . n B 1 6 GLU 6 193 193 GLU GLU B . n B 1 7 CYS 7 194 194 CYS CYS B . n B 1 8 HIS 8 195 195 HIS HIS B . n B 1 9 ILE 9 196 196 ILE ILE B . n B 1 10 ASN 10 197 197 ASN ASN B . n B 1 11 ILE 11 198 198 ILE ILE B . n B 1 12 GLU 12 199 199 GLU GLU B . n B 1 13 MET 13 200 200 MET MET B . n B 1 14 ASP 14 201 201 ASP ASP B . n B 1 15 PRO 15 202 202 PRO PRO B . n B 1 16 VAL 16 203 203 VAL VAL B . n B 1 17 LEU 17 204 204 LEU LEU B . n B 1 18 HIS 18 205 205 HIS HIS B . n B 1 19 ASP 19 206 206 ASP ASP B . n B 1 20 VAL 20 207 207 VAL VAL B . n B 1 21 PHE 21 208 208 PHE PHE B . n B 1 22 LYS 22 209 209 LYS LYS B . n B 1 23 LEU 23 210 210 LEU LEU B . n B 1 24 GLN 24 211 211 GLN GLN B . n B 1 25 VAL 25 212 212 VAL VAL B . n B 1 26 CYS 26 213 213 CYS CYS B . n B 1 27 LYS 27 214 214 LYS LYS B . n B 1 28 GLN 28 215 215 GLN GLN B . n B 1 29 CYS 29 216 216 CYS CYS B . n B 1 30 SER 30 217 217 SER SER B . n B 1 31 LYS 31 218 218 LYS LYS B . n B 1 32 GLU 32 219 219 GLU GLU B . n B 1 33 HIS 33 220 220 HIS HIS B . n B 1 34 PRO 34 221 221 PRO PRO B . n B 1 35 GLU 35 222 222 GLU GLU B . n B 1 36 LYS 36 223 223 LYS LYS B . n B 1 37 TYR 37 224 224 TYR TYR B . n B 1 38 ALA 38 225 225 ALA ALA B . n B 1 39 LEU 39 226 226 LEU LEU B . n B 1 40 LEU 40 227 227 LEU LEU B . n B 1 41 THR 41 228 228 THR THR B . n B 1 42 LYS 42 229 229 LYS LYS B . n B 1 43 THR 43 230 230 THR THR B . n B 1 44 GLU 44 231 231 GLU GLU B . n B 1 45 CYS 45 232 232 CYS CYS B . n B 1 46 LYS 46 233 233 LYS LYS B . n B 1 47 GLU 47 234 234 GLU GLU B . n B 1 48 ASP 48 235 235 ASP ASP B . n B 1 49 TYR 49 236 236 TYR TYR B . n B 1 50 PHE 50 237 237 PHE PHE B . n B 1 51 LEU 51 238 238 LEU LEU B . n B 1 52 THR 52 239 239 THR THR B . n B 1 53 ASP 53 240 240 ASP ASP B . n B 1 54 PRO 54 241 241 PRO PRO B . n B 1 55 GLU 55 242 242 GLU GLU B . n B 1 56 LEU 56 243 243 LEU LEU B . n B 1 57 ASN 57 244 244 ASN ASN B . n B 1 58 ASP 58 245 245 ASP ASP B . n B 1 59 GLU 59 246 246 GLU GLU B . n B 1 60 ASP 60 247 247 ASP ASP B . n B 1 61 LEU 61 248 248 LEU LEU B . n B 1 62 PHE 62 249 249 PHE PHE B . n B 1 63 HIS 63 250 250 HIS HIS B . n B 1 64 ARG 64 251 251 ARG ARG B . n B 1 65 LEU 65 252 252 LEU LEU B . n B 1 66 GLU 66 253 253 GLU GLU B . n B 1 67 LYS 67 254 254 LYS LYS B . n B 1 68 PRO 68 255 255 PRO PRO B . n B 1 69 ASN 69 256 256 ASN ASN B . n B 1 70 PRO 70 257 257 PRO PRO B . n B 1 71 HIS 71 258 258 HIS HIS B . n B 1 72 SER 72 259 259 SER SER B . n B 1 73 GLY 73 260 260 GLY GLY B . n B 1 74 THR 74 261 261 THR THR B . n B 1 75 PHE 75 262 262 PHE PHE B . n B 1 76 ALA 76 263 263 ALA ALA B . n B 1 77 ARG 77 264 264 ARG ARG B . n B 1 78 MET 78 265 265 MET MET B . n B 1 79 GLN 79 266 266 GLN GLN B . n B 1 80 LEU 80 267 267 LEU LEU B . n B 1 81 PHE 81 268 268 PHE PHE B . n B 1 82 VAL 82 269 269 VAL VAL B . n B 1 83 ARG 83 270 270 ARG ARG B . n B 1 84 CYS 84 271 271 CYS CYS B . n B 1 85 GLU 85 272 272 GLU GLU B . n B 1 86 VAL 86 273 273 VAL VAL B . n B 1 87 GLU 87 274 274 GLU GLU B . n B 1 88 ALA 88 275 275 ALA ALA B . n B 1 89 PHE 89 276 276 PHE PHE B . n B 1 90 ALA 90 277 277 ALA ALA B . n B 1 91 PHE 91 278 278 PHE PHE B . n B 1 92 LYS 92 279 279 LYS LYS B . n B 1 93 LYS 93 280 280 LYS LYS B . n B 1 94 TRP 94 281 281 TRP TRP B . n B 1 95 GLY 95 282 282 GLY GLY B . n B 1 96 GLY 96 283 283 GLY GLY B . n B 1 97 GLU 97 284 284 GLU GLU B . n B 1 98 GLU 98 285 285 GLU GLU B . n B 1 99 GLY 99 286 286 GLY GLY B . n B 1 100 LEU 100 287 287 LEU LEU B . n B 1 101 ASP 101 288 288 ASP ASP B . n B 1 102 GLU 102 289 289 GLU GLU B . n B 1 103 GLU 103 290 290 GLU GLU B . n B 1 104 TRP 104 291 291 TRP TRP B . n B 1 105 GLN 105 292 292 GLN GLN B . n B 1 106 ARG 106 293 293 ARG ARG B . n B 1 107 ARG 107 294 294 ARG ARG B . n B 1 108 GLU 108 295 295 GLU GLU B . n B 1 109 GLU 109 296 296 GLU GLU B . n B 1 110 GLY 110 297 297 GLY GLY B . n B 1 111 LYS 111 298 298 LYS LYS B . n B 1 112 ALA 112 299 299 ALA ALA B . n B 1 113 HIS 113 300 300 HIS HIS B . n B 1 114 ARG 114 301 301 ARG ARG B . n B 1 115 ARG 115 302 302 ARG ARG B . n C 2 1 DT 1 1 1 DT DT C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DT 3 3 3 DT DT C . n C 2 4 DC 4 4 4 DC DC C . n C 2 5 DT 5 5 5 DT DT C . n C 2 6 DA 6 6 6 DA DA C . n C 2 7 DC 7 7 7 DC DC C . n C 2 8 8FG 8 8 8 8FG 8FG C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DC 10 10 10 DC DC C . n C 2 11 DA 11 11 11 DA DA C . n C 2 12 DT 12 12 12 DT DT C . n C 2 13 DC 13 13 13 DC DC C . n C 2 14 DA 14 14 14 DA DA C . n C 2 15 DC 15 15 15 DC DC C . n D 3 1 DG 1 1 1 DG DG D . n D 3 2 5IU 2 2 2 5IU 5IU D . n D 3 3 DG 3 3 3 DG DG D . n D 3 4 DA 4 4 4 DA DA D . n D 3 5 5IU 5 5 5 5IU 5IU D . n D 3 6 DG 6 6 6 DG DG D . n D 3 7 DA 7 7 7 DA DA D . n D 3 8 DC 8 8 8 DC DC D . n D 3 9 DG 9 9 9 DG DG D . n D 3 10 5IU 10 10 10 5IU 5IU D . n D 3 11 DA 11 11 11 DA DA D . n D 3 12 DG 12 12 12 DG DG D . n D 3 13 DA 13 13 13 DA DA D . n D 3 14 DG 14 14 14 DG DG D . n D 3 15 DA 15 15 15 DA DA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN 1 500 500 ZN ZN A . F 4 ZN 1 500 500 ZN ZN B . G 5 HOH 1 2001 2001 HOH HOH A . G 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 3 2003 2003 HOH HOH A . G 5 HOH 4 2004 2004 HOH HOH A . G 5 HOH 5 2005 2005 HOH HOH A . G 5 HOH 6 2006 2006 HOH HOH A . G 5 HOH 7 2007 2007 HOH HOH A . G 5 HOH 8 2008 2008 HOH HOH A . G 5 HOH 9 2009 2009 HOH HOH A . G 5 HOH 10 2010 2010 HOH HOH A . G 5 HOH 11 2011 2011 HOH HOH A . G 5 HOH 12 2012 2012 HOH HOH A . G 5 HOH 13 2013 2013 HOH HOH A . G 5 HOH 14 2014 2014 HOH HOH A . G 5 HOH 15 2015 2015 HOH HOH A . G 5 HOH 16 2016 2016 HOH HOH A . G 5 HOH 17 2017 2017 HOH HOH A . G 5 HOH 18 2018 2018 HOH HOH A . G 5 HOH 19 2019 2019 HOH HOH A . H 5 HOH 1 2001 2001 HOH HOH B . H 5 HOH 2 2002 2002 HOH HOH B . H 5 HOH 3 2003 2003 HOH HOH B . H 5 HOH 4 2004 2004 HOH HOH B . H 5 HOH 5 2005 2005 HOH HOH B . H 5 HOH 6 2006 2006 HOH HOH B . H 5 HOH 7 2007 2007 HOH HOH B . H 5 HOH 8 2008 2008 HOH HOH B . H 5 HOH 9 2009 2009 HOH HOH B . H 5 HOH 10 2010 2010 HOH HOH B . H 5 HOH 11 2011 2011 HOH HOH B . H 5 HOH 12 2012 2012 HOH HOH B . H 5 HOH 13 2013 2013 HOH HOH B . H 5 HOH 14 2014 2014 HOH HOH B . H 5 HOH 15 2015 2015 HOH HOH B . H 5 HOH 16 2016 2016 HOH HOH B . H 5 HOH 17 2017 2017 HOH HOH B . H 5 HOH 18 2018 2018 HOH HOH B . I 5 HOH 1 2001 2001 HOH HOH C . I 5 HOH 2 2002 2002 HOH HOH C . J 5 HOH 1 2001 2001 HOH HOH D . J 5 HOH 2 2002 2002 HOH HOH D . J 5 HOH 3 2003 2003 HOH HOH D . J 5 HOH 4 3001 3001 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C 8FG 8 C 8FG 8 ? DG ? 2 D 5IU 2 D 5IU 2 ? DU "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 3 D 5IU 5 D 5IU 5 ? DU "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 4 D 5IU 10 D 5IU 10 ? DU "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11990 ? 1 MORE -25.8 ? 1 'SSA (A^2)' 16090 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 4 ? A CYS 191 ? 1_555 ZN ? E ZN . ? A ZN 500 ? 1_555 SG ? A CYS 29 ? A CYS 216 ? 1_555 115.0 ? 2 SG ? A CYS 4 ? A CYS 191 ? 1_555 ZN ? E ZN . ? A ZN 500 ? 1_555 SG ? A CYS 7 ? A CYS 194 ? 1_555 105.4 ? 3 SG ? A CYS 29 ? A CYS 216 ? 1_555 ZN ? E ZN . ? A ZN 500 ? 1_555 SG ? A CYS 7 ? A CYS 194 ? 1_555 107.2 ? 4 SG ? A CYS 4 ? A CYS 191 ? 1_555 ZN ? E ZN . ? A ZN 500 ? 1_555 SG ? A CYS 26 ? A CYS 213 ? 1_555 112.8 ? 5 SG ? A CYS 29 ? A CYS 216 ? 1_555 ZN ? E ZN . ? A ZN 500 ? 1_555 SG ? A CYS 26 ? A CYS 213 ? 1_555 101.1 ? 6 SG ? A CYS 7 ? A CYS 194 ? 1_555 ZN ? E ZN . ? A ZN 500 ? 1_555 SG ? A CYS 26 ? A CYS 213 ? 1_555 115.6 ? 7 SG ? B CYS 26 ? B CYS 213 ? 1_555 ZN ? F ZN . ? B ZN 500 ? 1_555 SG ? B CYS 7 ? B CYS 194 ? 1_555 117.0 ? 8 SG ? B CYS 26 ? B CYS 213 ? 1_555 ZN ? F ZN . ? B ZN 500 ? 1_555 SG ? B CYS 29 ? B CYS 216 ? 1_555 101.6 ? 9 SG ? B CYS 7 ? B CYS 194 ? 1_555 ZN ? F ZN . ? B ZN 500 ? 1_555 SG ? B CYS 29 ? B CYS 216 ? 1_555 106.1 ? 10 SG ? B CYS 26 ? B CYS 213 ? 1_555 ZN ? F ZN . ? B ZN 500 ? 1_555 SG ? B CYS 4 ? B CYS 191 ? 1_555 111.3 ? 11 SG ? B CYS 7 ? B CYS 194 ? 1_555 ZN ? F ZN . ? B ZN 500 ? 1_555 SG ? B CYS 4 ? B CYS 191 ? 1_555 107.2 ? 12 SG ? B CYS 29 ? B CYS 216 ? 1_555 ZN ? F ZN . ? B ZN 500 ? 1_555 SG ? B CYS 4 ? B CYS 191 ? 1_555 113.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-01 2 'Structure model' 1 1 2015-07-22 3 'Structure model' 1 2 2017-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_detector # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_detector.type' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 27.1895 0.4765 34.3558 0.3128 0.3419 0.3637 0.0358 -0.0530 -0.0493 1.3851 3.9370 0.6633 2.3046 0.6450 0.9488 -0.1347 0.1488 -0.3155 -0.2908 0.2959 -0.4324 0.1049 0.2034 -0.1612 'X-RAY DIFFRACTION' 2 ? refined 26.7337 0.0654 31.5063 0.3562 0.3612 0.3595 0.0413 -0.0555 0.0041 3.3072 2.8127 1.0712 2.6280 0.6958 1.3592 0.0758 -0.2480 -0.5929 0.1765 0.0082 -0.4414 0.2457 0.1715 -0.0840 'X-RAY DIFFRACTION' 3 ? refined 24.1047 21.9281 64.7377 0.0780 0.1449 0.1036 0.0266 0.0236 -0.0154 3.2222 2.7389 11.5368 1.1409 2.8301 4.4861 0.2915 -0.0355 0.1089 0.1058 -0.2294 0.1866 -0.0458 -0.8334 -0.0621 'X-RAY DIFFRACTION' 4 ? refined 32.5367 16.6595 59.1544 0.1432 0.0964 0.0962 0.0393 -0.0498 -0.0277 0.3263 4.8278 9.6610 0.3689 -0.5747 5.0103 0.1664 0.0719 0.0014 0.3395 0.3191 -0.3106 0.1939 0.2304 -0.4856 'X-RAY DIFFRACTION' 5 ? refined 26.5410 8.9884 47.1371 0.0501 0.0594 0.0399 -0.0216 -0.0188 -0.0265 4.0860 8.0687 3.7482 1.3693 0.2495 2.5190 0.1673 0.2296 -0.2976 0.3114 -0.2449 0.0414 0.2943 -0.2231 0.0775 'X-RAY DIFFRACTION' 6 ? refined 29.5175 13.2366 47.5326 0.0382 0.0506 0.0596 0.0022 -0.0369 -0.0052 1.2828 4.2933 6.7577 0.6427 -0.1486 -3.3730 0.0848 0.1181 -0.0111 0.0783 -0.0952 -0.2319 0.2139 -0.1403 0.0104 'X-RAY DIFFRACTION' 7 ? refined 42.5919 -6.3374 43.4016 1.4258 0.7566 1.2796 0.3383 -0.1032 -0.0357 15.1775 10.5813 28.7446 -12.6132 -20.8685 17.3960 0.7099 -1.6520 0.7212 -1.2576 0.7768 -0.6514 -1.7524 2.2371 -1.4867 'X-RAY DIFFRACTION' 8 ? refined 4.9715 2.7508 0.6526 0.1252 0.0444 0.0757 -0.0045 -0.0208 0.0101 4.3606 4.5899 13.1657 1.4272 4.3828 3.7402 -0.1523 0.1166 0.2118 -0.1149 0.2261 0.0539 -0.8303 -0.0799 -0.0738 'X-RAY DIFFRACTION' 9 ? refined 10.1735 -5.6647 6.2459 0.1035 0.1005 0.1168 0.0334 -0.0388 -0.0682 4.8395 0.1792 11.3262 -0.1540 5.1820 -1.1051 0.3338 0.2460 -0.3213 0.0254 0.0547 -0.0095 0.2770 0.1525 -0.3884 'X-RAY DIFFRACTION' 10 ? refined 17.8693 0.3698 18.2116 0.1394 0.1178 0.1134 -0.0297 -0.0222 -0.0354 7.6345 3.1290 2.1623 -0.3736 1.8365 0.0601 -0.1354 0.2903 0.1117 0.0999 0.0636 -0.3118 -0.1506 0.2589 0.0718 'X-RAY DIFFRACTION' 11 ? refined 13.6416 -2.6827 17.9531 0.0946 0.0955 0.1382 0.0013 -0.0315 -0.0415 4.6259 2.0298 7.4289 0.9091 -3.9358 -0.3020 -0.0497 -0.0205 -0.1944 0.0809 0.0267 -0.0610 -0.0681 0.2719 0.0230 'X-RAY DIFFRACTION' 12 ? refined 32.3207 -10.7892 16.0367 0.2783 0.4697 0.5959 0.1359 0.1016 -0.1471 6.0364 14.2743 7.6767 -5.1428 3.0321 -6.4283 -0.1788 0.4859 -0.9350 -0.0668 -0.1483 -0.5890 1.0874 1.0001 0.3271 'X-RAY DIFFRACTION' 13 ? refined 26.9211 -0.9358 30.9112 0.3877 0.3926 0.4705 0.0404 -0.0334 -0.0857 2.4616 0.3394 0.3579 0.8975 0.9118 0.3295 0.2037 0.0664 -0.4714 0.0531 0.0040 -0.2318 0.1384 0.0910 -0.2078 'X-RAY DIFFRACTION' 14 ? refined 27.7132 0.2176 34.3464 0.5441 0.4815 0.6578 -0.0088 0.0442 -0.0665 0.1987 0.0911 0.8082 0.0686 0.3979 0.1357 0.1532 0.0999 -0.1169 -0.0322 0.0635 -0.2328 0.2978 0.2677 -0.2167 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 C 1 ? ? C 14 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 D 1 ? ? D 14 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 101 ? ? A 123 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 124 ? ? A 142 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 143 ? ? A 166 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 167 ? ? A 191 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 206 ? ? A 216 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 101 ? ? B 123 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 124 ? ? B 142 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 143 ? ? B 166 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 B 167 ? ? B 191 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 B 192 ? ? B 214 ? ? ? ? 'X-RAY DIFFRACTION' 13 13 C 1 ? ? C 14 ? ? ? ? 'X-RAY DIFFRACTION' 14 14 D 1 ? ? D 14 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.7.0032 ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? Aimless 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 5A3D _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'SYNTHESIZED DNA' # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 C7 _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 DT _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 B _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2011 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_554 _pdbx_validate_symm_contact.dist 1.64 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 243 ? ? CG A LEU 243 ? ? CD1 A LEU 243 ? ? 124.35 111.00 13.35 1.70 N 2 1 CB A LEU 252 ? ? CG A LEU 252 ? ? CD2 A LEU 252 ? ? 122.99 111.00 11.99 1.70 N 3 1 CB B LEU 243 ? ? CG B LEU 243 ? ? CD2 B LEU 243 ? ? 121.20 111.00 10.20 1.70 N 4 1 CB B LEU 252 ? ? CG B LEU 252 ? ? CD2 B LEU 252 ? ? 125.56 111.00 14.56 1.70 N 5 1 NE B ARG 264 ? ? CZ B ARG 264 ? ? NH1 B ARG 264 ? ? 124.39 120.30 4.09 0.50 N 6 1 NE B ARG 264 ? ? CZ B ARG 264 ? ? NH2 B ARG 264 ? ? 117.04 120.30 -3.26 0.50 N 7 1 "C5'" D DG 1 ? A "C4'" D DG 1 ? A "O4'" D DG 1 ? A 118.66 109.80 8.86 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 196 ? ? -123.12 -64.83 2 1 SER A 259 ? ? -171.02 134.85 3 1 ILE B 196 ? ? -123.30 -60.46 4 1 SER B 259 ? ? -175.82 134.37 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2019 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.81 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 300 ? CG ? A HIS 113 CG 2 1 Y 1 A HIS 300 ? ND1 ? A HIS 113 ND1 3 1 Y 1 A HIS 300 ? CD2 ? A HIS 113 CD2 4 1 Y 1 A HIS 300 ? CE1 ? A HIS 113 CE1 5 1 Y 1 A HIS 300 ? NE2 ? A HIS 113 NE2 6 1 Y 1 A ARG 301 ? CG ? A ARG 114 CG 7 1 Y 1 A ARG 301 ? CD ? A ARG 114 CD 8 1 Y 1 A ARG 301 ? NE ? A ARG 114 NE 9 1 Y 1 A ARG 301 ? CZ ? A ARG 114 CZ 10 1 Y 1 A ARG 301 ? NH1 ? A ARG 114 NH1 11 1 Y 1 A ARG 301 ? NH2 ? A ARG 114 NH2 12 1 Y 1 B HIS 300 ? CG ? B HIS 113 CG 13 1 Y 1 B HIS 300 ? ND1 ? B HIS 113 ND1 14 1 Y 1 B HIS 300 ? CD2 ? B HIS 113 CD2 15 1 Y 1 B HIS 300 ? CE1 ? B HIS 113 CE1 16 1 Y 1 B HIS 300 ? NE2 ? B HIS 113 NE2 17 1 Y 1 B ARG 301 ? CG ? B ARG 114 CG 18 1 Y 1 B ARG 301 ? CD ? B ARG 114 CD 19 1 Y 1 B ARG 301 ? NE ? B ARG 114 NE 20 1 Y 1 B ARG 301 ? CZ ? B ARG 114 CZ 21 1 Y 1 B ARG 301 ? NH1 ? B ARG 114 NH1 22 1 Y 1 B ARG 301 ? NH2 ? B ARG 114 NH2 23 1 Y 1 B ARG 302 ? CG ? B ARG 115 CG 24 1 Y 1 B ARG 302 ? CD ? B ARG 115 CD 25 1 Y 1 B ARG 302 ? NE ? B ARG 115 NE 26 1 Y 1 B ARG 302 ? CZ ? B ARG 115 CZ 27 1 Y 1 B ARG 302 ? NH1 ? B ARG 115 NH1 28 1 Y 1 B ARG 302 ? NH2 ? B ARG 115 NH2 29 1 Y 1 D DC 8 ? N1 ? D DC 8 N1 30 1 Y 1 D DC 8 ? C2 ? D DC 8 C2 31 1 Y 1 D DC 8 ? O2 ? D DC 8 O2 32 1 Y 1 D DC 8 ? N3 ? D DC 8 N3 33 1 Y 1 D DC 8 ? C4 ? D DC 8 C4 34 1 Y 1 D DC 8 ? N4 ? D DC 8 N4 35 1 Y 1 D DC 8 ? C5 ? D DC 8 C5 36 1 Y 1 D DC 8 ? C6 ? D DC 8 C6 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ARG _pdbx_unobs_or_zero_occ_residues.auth_seq_id 302 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ARG _pdbx_unobs_or_zero_occ_residues.label_seq_id 115 # _ndb_struct_conf_na.entry_id 5A3D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 2 1_555 D DG 14 1_555 0.189 -0.118 0.195 -8.288 -7.908 3.203 1 C_DC2:DG14_D C 2 ? D 14 ? 19 1 1 C DT 3 1_555 D DA 13 1_555 -0.254 -0.066 0.312 -3.288 -9.489 1.296 2 C_DT3:DA13_D C 3 ? D 13 ? 20 1 1 C DC 4 1_555 D DG 12 1_555 0.093 -0.231 0.287 -0.416 -9.963 -0.998 3 C_DC4:DG12_D C 4 ? D 12 ? 19 1 1 C DT 5 1_555 D DA 11 1_555 0.383 -0.198 0.446 7.748 -5.288 2.104 4 C_DT5:DA11_D C 5 ? D 11 ? 20 1 1 C DA 6 1_555 D 5IU 10 1_555 -0.227 -0.029 0.296 3.443 -8.874 -2.347 5 C_DA6:5IU10_D C 6 ? D 10 ? 20 1 1 C DC 7 1_555 D DG 9 1_555 0.238 -0.337 -0.081 21.524 1.462 -2.264 6 C_DC7:DG9_D C 7 ? D 9 ? 19 1 1 C DT 9 1_555 D DA 7 1_555 -0.190 -0.366 0.570 -12.832 -5.249 4.474 7 C_DT9:DA7_D C 9 ? D 7 ? 20 1 1 C DC 10 1_555 D DG 6 1_555 0.187 -0.331 -0.060 -0.315 -0.921 -2.657 8 C_DC10:DG6_D C 10 ? D 6 ? 19 1 1 C DA 11 1_555 D 5IU 5 1_555 0.053 -0.002 0.108 6.568 -14.065 -3.669 9 C_DA11:5IU5_D C 11 ? D 5 ? 20 1 1 C DT 12 1_555 D DA 4 1_555 0.088 -0.102 -0.080 10.945 -8.220 -0.038 10 C_DT12:DA4_D C 12 ? D 4 ? 20 1 1 C DC 13 1_555 D DG 3 1_555 -0.080 -0.072 -0.417 22.196 -11.179 -1.010 11 C_DC13:DG3_D C 13 ? D 3 ? 19 1 1 C DA 14 1_555 D 5IU 2 1_555 0.161 -0.175 0.068 7.590 -17.211 -1.409 12 C_DA14:5IU2_D C 14 ? D 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 2 1_555 D DG 14 1_555 C DT 3 1_555 D DA 13 1_555 -0.724 -0.698 3.160 -0.836 -2.744 31.529 -0.784 1.177 3.225 -5.038 1.534 31.656 1 CC_DC2DT3:DA13DG14_DD C 2 ? D 14 ? C 3 ? D 13 ? 1 C DT 3 1_555 D DA 13 1_555 C DC 4 1_555 D DG 12 1_555 -0.345 0.080 3.219 -0.328 3.222 36.660 -0.305 0.502 3.217 5.110 0.520 36.798 2 CC_DT3DC4:DG12DA13_DD C 3 ? D 13 ? C 4 ? D 12 ? 1 C DC 4 1_555 D DG 12 1_555 C DT 5 1_555 D DA 11 1_555 0.318 0.305 3.345 -5.048 -3.456 34.661 1.025 -1.288 3.224 -5.746 8.392 35.180 3 CC_DC4DT5:DA11DG12_DD C 4 ? D 12 ? C 5 ? D 11 ? 1 C DT 5 1_555 D DA 11 1_555 C DA 6 1_555 D 5IU 10 1_555 -0.157 0.629 3.290 -1.200 -0.373 41.407 0.930 0.093 3.287 -0.527 1.697 41.425 4 CC_DT5DA6:5IU10DA11_DD C 5 ? D 11 ? C 6 ? D 10 ? 1 C DA 6 1_555 D 5IU 10 1_555 C DC 7 1_555 D DG 9 1_555 0.079 -0.201 2.903 0.203 2.461 29.438 -0.856 -0.117 2.878 4.831 -0.398 29.539 5 CC_DA6DC7:DG95IU10_DD C 6 ? D 10 ? C 7 ? D 9 ? 1 C DT 9 1_555 D DA 7 1_555 C DC 10 1_555 D DG 6 1_555 0.600 0.453 3.099 6.462 0.679 32.361 0.687 0.004 3.165 1.203 -11.450 32.989 6 CC_DT9DC10:DG6DA7_DD C 9 ? D 7 ? C 10 ? D 6 ? 1 C DC 10 1_555 D DG 6 1_555 C DA 11 1_555 D 5IU 5 1_555 -1.029 0.924 3.317 -2.753 7.849 35.232 0.319 1.247 3.504 12.748 4.472 36.170 7 CC_DC10DA11:5IU5DG6_DD C 10 ? D 6 ? C 11 ? D 5 ? 1 C DA 11 1_555 D 5IU 5 1_555 C DT 12 1_555 D DA 4 1_555 0.300 -0.315 3.133 -1.544 -2.241 28.429 -0.150 -0.945 3.128 -4.551 3.134 28.556 8 CC_DA11DT12:DA45IU5_DD C 11 ? D 5 ? C 12 ? D 4 ? 1 C DT 12 1_555 D DA 4 1_555 C DC 13 1_555 D DG 3 1_555 1.040 0.878 2.992 7.268 0.787 34.136 1.351 -0.687 3.159 1.322 -12.207 34.887 9 CC_DT12DC13:DG3DA4_DD C 12 ? D 4 ? C 13 ? D 3 ? 1 C DC 13 1_555 D DG 3 1_555 C DA 14 1_555 D 5IU 2 1_555 0.161 0.209 3.771 -2.915 5.321 41.672 -0.345 -0.573 3.750 7.432 4.071 42.092 10 CC_DC13DA14:5IU2DG3_DD C 13 ? D 3 ? C 14 ? D 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH #