HEADER OXIDOREDUCTASE 18-JUN-15 5A5I TITLE CYTOCHROME 2C9 P450 INHIBITOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 2C9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-489; COMPND 5 SYNONYM: (R)-LIMONENE 6-MONOOXYGENASE, (S)-LIMONENE COMPND 6 6-MONOOXYGENASE, (S)-LIMONENE 7-MONOOXYGENASE, CYPIIC9, CYTOCHROME COMPND 7 P-450MP, CYTOCH ROME P450 MP-4, CYTOCHROME P450 MP-8, CYTOCHROME COMPND 8 P450 PB-1, S-MEPH ENYTOIN 4-HYDROXYLASE, CYTOCHROME 2C9; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.SKERRATT,M.J.DE GROOT,C.PHILLIPS REVDAT 1 24-AUG-16 5A5I 0 JRNL AUTH S.E.SKERRATT,M.J.DE GROOT,C.PHILLIPS JRNL TITL DISCOVERY OF A NOVEL BINDING POCKET FOR CYP 2C9 INHIBITORS: JRNL TITL 2 CRYSTALLOGRAPHY, PHARMACOPHORE MODELLING AND INHIBITOR SAR. JRNL REF MED.CHEM.COMM. V. 7 813 2016 JRNL REFN ISSN 2040-2503 JRNL DOI 10.1039/C6MD00011H REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 94.57 REMARK 3 NUMBER OF REFLECTIONS : 32791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21409 REMARK 3 R VALUE (WORKING SET) : 0.21240 REMARK 3 FREE R VALUE : 0.24501 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.000 REMARK 3 BIN RESOLUTION RANGE LOW : 2.052 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.335 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.348 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.892 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08 REMARK 3 B22 (A**2) : 0.08 REMARK 3 B33 (A**2) : -0.25 REMARK 3 B12 (A**2) : 0.08 REMARK 3 B13 (A**2) : -0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.992 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3810 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3670 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5166 ; 1.900 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8478 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 6.910 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;38.294 ;24.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;19.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.086 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4245 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 867 ; 0.005 ; 0.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1817 ; 3.996 ; 4.057 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1818 ; 3.995 ; 4.058 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2267 ; 6.049 ; 6.060 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2) : 2267 ; 6.051 ; 6.061 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1993 ; 4.361 ; 4.597 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2) : 1987 ; 4.357 ; 4.594 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2) : 2891 ; 6.635 ; 6.682 REMARK 3 LONG RANGE B REFINED ATOMS (A**2) : 4223 ; 9.697 ;32.577 REMARK 3 LONG RANGE B OTHER ATOMS (A**2) : 4224 ; 9.697 ;32.584 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5A5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-16. REMARK 100 THE PDBE ID CODE IS EBI-64105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27322 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 25.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 2.8 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.10850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.62075 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.80467 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 46.10850 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 26.62075 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.80467 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 46.10850 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 26.62075 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.80467 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.24151 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 113.60933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 53.24151 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 113.60933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 53.24151 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 113.60933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 LYS A 20 REMARK 465 LYS A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 VAL A 38 REMARK 465 ILE A 39 REMARK 465 GLY A 40 REMARK 465 ASN A 41 REMARK 465 ILE A 42 REMARK 465 PHE A 100 REMARK 465 PRO A 101 REMARK 465 GLN A 214 REMARK 465 ILE A 215 REMARK 465 CYS A 216 REMARK 465 ASN A 217 REMARK 465 ASN A 218 REMARK 465 PHE A 219 REMARK 465 SER A 220 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 108 O7 XI1 A 1493 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 438 CD GLU A 438 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 CYS A 151 CA - CB - SG ANGL. DEV. = -7.1 DEGREES REMARK 500 PHE A 183 CB - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 MET A 426 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 433 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 433 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 35 -171.10 -54.68 REMARK 500 LEU A 36 -18.68 76.74 REMARK 500 GLU A 104 118.59 69.10 REMARK 500 ALA A 106 -35.72 -34.94 REMARK 500 PHE A 226 -38.70 168.13 REMARK 500 PRO A 227 -86.06 -13.65 REMARK 500 SER A 254 40.74 -85.33 REMARK 500 ASN A 334 -78.53 -67.05 REMARK 500 SER A 365 -142.10 51.64 REMARK 500 ARG A 377 -117.17 57.11 REMARK 500 LYS A 383 125.65 -32.25 REMARK 500 SER A 429 -155.88 80.13 REMARK 500 LEU A 467 106.04 -28.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1494 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 HEM A1494 ND 92.9 REMARK 620 3 HEM A1494 NB 90.2 176.8 REMARK 620 4 HEM A1494 NC 84.8 87.6 93.4 REMARK 620 5 HEM A1494 NA 98.6 92.7 86.2 176.5 REMARK 620 6 HOH A2007 O 176.4 84.9 92.0 98.0 78.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XI1 A1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A1494 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A5J RELATED DB: PDB REMARK 900 CYTOCHROME 2C9 P450 INHIBITOR COMPLEX DBREF 5A5I A 23 489 UNP P11712 CP2C9_HUMAN 23 489 SEQADV 5A5I MET A 18 UNP P11712 EXPRESSION TAG SEQADV 5A5I ALA A 19 UNP P11712 EXPRESSION TAG SEQADV 5A5I LYS A 20 UNP P11712 EXPRESSION TAG SEQADV 5A5I LYS A 21 UNP P11712 EXPRESSION TAG SEQADV 5A5I THR A 22 UNP P11712 EXPRESSION TAG SEQADV 5A5I ILE A 490 UNP P11712 EXPRESSION TAG SEQADV 5A5I HIS A 491 UNP P11712 EXPRESSION TAG SEQADV 5A5I HIS A 492 UNP P11712 EXPRESSION TAG SEQADV 5A5I HIS A 493 UNP P11712 EXPRESSION TAG SEQADV 5A5I HIS A 494 UNP P11712 EXPRESSION TAG SEQRES 1 A 477 MET ALA LYS LYS THR SER SER GLY ARG GLY LYS LEU PRO SEQRES 2 A 477 PRO GLY PRO THR PRO LEU PRO VAL ILE GLY ASN ILE LEU SEQRES 3 A 477 GLN ILE GLY ILE LYS ASP ILE SER LYS SER LEU THR ASN SEQRES 4 A 477 LEU SER LYS VAL TYR GLY PRO VAL PHE THR LEU TYR PHE SEQRES 5 A 477 GLY LEU LYS PRO ILE VAL VAL LEU HIS GLY TYR GLU ALA SEQRES 6 A 477 VAL LYS GLU ALA LEU ILE ASP LEU GLY GLU GLU PHE SER SEQRES 7 A 477 GLY ARG GLY ILE PHE PRO LEU ALA GLU ARG ALA ASN ARG SEQRES 8 A 477 GLY PHE GLY ILE VAL PHE SER ASN GLY LYS LYS TRP LYS SEQRES 9 A 477 GLU ILE ARG ARG PHE SER LEU MET THR LEU ARG ASN PHE SEQRES 10 A 477 GLY MET GLY LYS ARG SER ILE GLU ASP ARG VAL GLN GLU SEQRES 11 A 477 GLU ALA ARG CYS LEU VAL GLU GLU LEU ARG LYS THR LYS SEQRES 12 A 477 ALA SER PRO CYS ASP PRO THR PHE ILE LEU GLY CYS ALA SEQRES 13 A 477 PRO CYS ASN VAL ILE CYS SER ILE ILE PHE HIS LYS ARG SEQRES 14 A 477 PHE ASP TYR LYS ASP GLN GLN PHE LEU ASN LEU MET GLU SEQRES 15 A 477 LYS LEU ASN GLU ASN ILE LYS ILE LEU SER SER PRO TRP SEQRES 16 A 477 ILE GLN ILE CYS ASN ASN PHE SER PRO ILE ILE ASP TYR SEQRES 17 A 477 PHE PRO GLY THR HIS ASN LYS LEU LEU LYS ASN VAL ALA SEQRES 18 A 477 PHE MET LYS SER TYR ILE LEU GLU LYS VAL LYS GLU HIS SEQRES 19 A 477 GLN GLU SER MET ASP MET ASN ASN PRO GLN ASP PHE ILE SEQRES 20 A 477 ASP CYS PHE LEU MET LYS MET GLU LYS GLU LYS HIS ASN SEQRES 21 A 477 GLN PRO SER GLU PHE THR ILE GLU SER LEU GLU ASN THR SEQRES 22 A 477 ALA VAL ASP LEU PHE GLY ALA GLY THR GLU THR THR SER SEQRES 23 A 477 THR THR LEU ARG TYR ALA LEU LEU LEU LEU LEU LYS HIS SEQRES 24 A 477 PRO GLU VAL THR ALA LYS VAL GLN GLU GLU ILE GLU ARG SEQRES 25 A 477 VAL ILE GLY ARG ASN ARG SER PRO CYS MET GLN ASP ARG SEQRES 26 A 477 SER HIS MET PRO TYR THR ASP ALA VAL VAL HIS GLU VAL SEQRES 27 A 477 GLN ARG TYR ILE ASP LEU LEU PRO THR SER LEU PRO HIS SEQRES 28 A 477 ALA VAL THR CYS ASP ILE LYS PHE ARG ASN TYR LEU ILE SEQRES 29 A 477 PRO LYS GLY THR THR ILE LEU ILE SER LEU THR SER VAL SEQRES 30 A 477 LEU HIS ASP ASN LYS GLU PHE PRO ASN PRO GLU MET PHE SEQRES 31 A 477 ASP PRO HIS HIS PHE LEU ASP GLU GLY GLY ASN PHE LYS SEQRES 32 A 477 LYS SER LYS TYR PHE MET PRO PHE SER ALA GLY LYS ARG SEQRES 33 A 477 ILE CYS VAL GLY GLU ALA LEU ALA GLY MET GLU LEU PHE SEQRES 34 A 477 LEU PHE LEU THR SER ILE LEU GLN ASN PHE ASN LEU LYS SEQRES 35 A 477 SER LEU VAL ASP PRO LYS ASN LEU ASP THR THR PRO VAL SEQRES 36 A 477 VAL ASN GLY PHE ALA SER VAL PRO PRO PHE TYR GLN LEU SEQRES 37 A 477 CYS PHE ILE PRO ILE HIS HIS HIS HIS HET XI1 A1493 24 HET HEM A1494 43 HETNAM XI1 N-[4-(3-CHLORANYL-4-CYANO-PHENOXY)CYCLOHEXYL] HETNAM 2 XI1 -1,1,1-TRIS(FLUORANYL)METHANESULFONAMIDE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 1 XI1 C14 H14 CL F3 N2 O3 S FORMUL 1 HEM C34 H32 FE N4 O4 FORMUL 2 HOH *7(H2 O) HELIX 1 1 GLY A 46 GLY A 62 1 17 HELIX 2 2 GLY A 79 ILE A 88 1 10 HELIX 3 3 ASN A 116 ARG A 132 1 17 HELIX 4 4 SER A 140 THR A 159 1 20 HELIX 5 5 PRO A 166 HIS A 184 1 19 HELIX 6 6 ASP A 191 SER A 209 1 19 HELIX 7 7 GLY A 228 SER A 254 1 27 HELIX 8 8 ASP A 262 GLU A 274 1 13 HELIX 9 9 THR A 283 HIS A 316 1 34 HELIX 10 10 HIS A 316 GLY A 332 1 17 HELIX 11 11 CYS A 338 HIS A 344 5 7 HELIX 12 12 MET A 345 ASP A 360 1 16 HELIX 13 13 LEU A 391 HIS A 396 1 6 HELIX 14 14 ASP A 408 PHE A 412 5 5 HELIX 15 15 ALA A 430 ILE A 434 5 5 HELIX 16 16 GLY A 437 ASN A 455 1 19 SHEET 1 AA 5 VAL A 64 PHE A 69 0 SHEET 2 AA 5 LYS A 72 LEU A 77 -1 O LYS A 72 N PHE A 69 SHEET 3 AA 5 THR A 386 ILE A 389 1 O THR A 386 N VAL A 75 SHEET 4 AA 5 HIS A 368 ALA A 369 -1 O HIS A 368 N ILE A 387 SHEET 5 AA 5 GLY A 96 ARG A 97 -1 O GLY A 96 N ALA A 369 SHEET 1 AB 2 ILE A 374 PHE A 376 0 SHEET 2 AB 2 TYR A 379 ILE A 381 -1 O TYR A 379 N PHE A 376 SHEET 1 AC 2 PHE A 456 SER A 460 0 SHEET 2 AC 2 LEU A 485 PRO A 489 -1 O CYS A 486 N LYS A 459 LINK SG CYS A 435 FE HEM A1494 1555 1555 2.33 LINK FE HEM A1494 O HOH A2007 1555 1555 2.47 CISPEP 1 GLN A 278 PRO A 279 0 1.22 SITE 1 AC1 11 ARG A 108 ASN A 204 ILE A 205 LEU A 208 SITE 2 AC1 11 VAL A 237 VAL A 292 ALA A 297 THR A 301 SITE 3 AC1 11 LEU A 362 HEM A1494 HOH A2007 SITE 1 AC2 19 ARG A 97 ILE A 112 TRP A 120 LEU A 294 SITE 2 AC2 19 ALA A 297 GLY A 298 THR A 301 THR A 305 SITE 3 AC2 19 SER A 365 HIS A 368 PRO A 427 PHE A 428 SITE 4 AC2 19 SER A 429 ARG A 433 CYS A 435 VAL A 436 SITE 5 AC2 19 XI1 A1493 HOH A2002 HOH A2007 CRYST1 92.217 92.217 170.414 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010844 0.006261 0.000000 0.00000 SCALE2 0.000000 0.012522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005868 0.00000