data_5A5P # _entry.id 5A5P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5A5P PDBE EBI-64112 WWPDB D_1290064112 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5A5N unspecified 'CRYSTAL STRUCTURE OF HUMAN ATAD2 BROMODOMAIN IN COMPLEX WITH (2S)-2,6-DIACETAMIDO-N-METHYLHEXANAMIDE' PDB 5A5O unspecified 'CRYSTAL STRUCTURE OF HUMAN ATAD2 BROMODOMAIN IN COMPLEX WITH 3-METHYL-1,2-DIHYDROQUINOLIN-2-ONE' PDB 5A5Q unspecified ;CRYSTAL STRUCTURE OF HUMAN ATAD2 BROMODOMAIN IN COMPLEX WITH 3-METHYL-8-PIPERIDIN-4-YLAMINO-1,2-DIHYDRO- 1,7-NAPHTHYRIDIN-2-ONE HYDROCHLORIDE ; PDB 5A5R unspecified ;CRYSTAL STRUCTURE OF HUMAN ATAD2 BROMODOMAIN IN COMPLEX WITH 5-5-METHOXYPYRIDIN-3-YL-3-METHYL-8-PIPERIDIN -4-YLAMINO-1,2-DIHYDRO-1,7-NAPHTHYRIDIN-2-ONE ; PDB 5A5S unspecified ;NN-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 5-5- METHOXYPYRIDIN-3-YL-3-METHYL-8-PIPERIDIN-4-YLAMINO-1 ,2-DIHYDRO-1,7-NAPHTHYRIDIN-2-ONE ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5A5P _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-06-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chung, C.' 1 'Bamborough, P.' 2 'Demont, E.' 3 # _citation.id primary _citation.title 'Fragment-Based Discovery of Low-Micromolar Atad2 Bromodomain Inhibitors.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 58 _citation.page_first 5649 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26155854 _citation.pdbx_database_id_DOI 10.1021/ACS.JMEDCHEM.5B00772 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Demont, E.H.' 1 primary 'Chung, C.' 2 primary 'Furze, R.C.' 3 primary 'Grandi, P.' 4 primary 'Michon, A.' 5 primary 'Wellaway, C.' 6 primary 'Barrett, N.' 7 primary 'Bridges, A.M.' 8 primary 'Craggs, P.D.' 9 primary 'Diallo, H.' 10 primary 'Dixon, D.P.' 11 primary 'Douault, C.' 12 primary 'Emmons, A.J.' 13 primary 'Jones, E.J.' 14 primary 'Karamshi, B.V.' 15 primary 'Locke, K.' 16 primary 'Mitchell, D.J.' 17 primary 'Mouzon, B.H.' 18 primary 'Prinjha, R.K.' 19 primary 'Roberts, A.D.' 20 primary 'Sheppard, R.J.' 21 primary 'Watson, R.J.' 22 primary 'Bamborough, P.' 23 # _cell.entry_id 5A5P _cell.length_a 79.393 _cell.length_b 79.393 _cell.length_c 136.901 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A5P _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2' 15453.514 1 3.6.1.3 ? 'BROMODOMAIN, RESIDUES 981-1108' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 non-polymer syn '8-{[2-(dimethylamino)ethyl]amino}-3-methyl-1,2-dihydroquinolin-2-one' 245.320 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 215 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AAA NUCLEAR COREGULATOR CANCER-ASSOCIATED PROTEIN, ANCCA, HUMAN ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICS NALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR ; _entity_poly.pdbx_seq_one_letter_code_can ;SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICS NALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLN n 1 4 GLU n 1 5 GLU n 1 6 ASP n 1 7 THR n 1 8 PHE n 1 9 ARG n 1 10 GLU n 1 11 LEU n 1 12 ARG n 1 13 ILE n 1 14 PHE n 1 15 LEU n 1 16 ARG n 1 17 ASN n 1 18 VAL n 1 19 THR n 1 20 HIS n 1 21 ARG n 1 22 LEU n 1 23 ALA n 1 24 ILE n 1 25 ASP n 1 26 LYS n 1 27 ARG n 1 28 PHE n 1 29 ARG n 1 30 VAL n 1 31 PHE n 1 32 THR n 1 33 LYS n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 PRO n 1 38 ASP n 1 39 GLU n 1 40 VAL n 1 41 PRO n 1 42 ASP n 1 43 TYR n 1 44 VAL n 1 45 THR n 1 46 VAL n 1 47 ILE n 1 48 LYS n 1 49 GLN n 1 50 PRO n 1 51 MET n 1 52 ASP n 1 53 LEU n 1 54 SER n 1 55 SER n 1 56 VAL n 1 57 ILE n 1 58 SER n 1 59 LYS n 1 60 ILE n 1 61 ASP n 1 62 LEU n 1 63 HIS n 1 64 LYS n 1 65 TYR n 1 66 LEU n 1 67 THR n 1 68 VAL n 1 69 LYS n 1 70 ASP n 1 71 TYR n 1 72 LEU n 1 73 ARG n 1 74 ASP n 1 75 ILE n 1 76 ASP n 1 77 LEU n 1 78 ILE n 1 79 CYS n 1 80 SER n 1 81 ASN n 1 82 ALA n 1 83 LEU n 1 84 GLU n 1 85 TYR n 1 86 ASN n 1 87 PRO n 1 88 ASP n 1 89 ARG n 1 90 ASP n 1 91 PRO n 1 92 GLY n 1 93 ASP n 1 94 ARG n 1 95 LEU n 1 96 ILE n 1 97 ARG n 1 98 HIS n 1 99 ARG n 1 100 ALA n 1 101 CYS n 1 102 ALA n 1 103 LEU n 1 104 ARG n 1 105 ASP n 1 106 THR n 1 107 ALA n 1 108 TYR n 1 109 ALA n 1 110 ILE n 1 111 ILE n 1 112 LYS n 1 113 GLU n 1 114 GLU n 1 115 LEU n 1 116 ASP n 1 117 GLU n 1 118 ASP n 1 119 PHE n 1 120 GLU n 1 121 GLN n 1 122 LEU n 1 123 CYS n 1 124 GLU n 1 125 GLU n 1 126 ILE n 1 127 GLN n 1 128 GLU n 1 129 SER n 1 130 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PNIC28-BSA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ATAD2_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q6PL18 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5A5P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6PL18 _struct_ref_seq.db_align_beg 981 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1108 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 981 _struct_ref_seq.pdbx_auth_seq_align_end 1108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5A5P SER A 1 ? UNP Q6PL18 ? ? 'expression tag' 979 1 1 5A5P MET A 2 ? UNP Q6PL18 ? ? 'expression tag' 980 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 JTF non-polymer . '8-{[2-(dimethylamino)ethyl]amino}-3-methyl-1,2-dihydroquinolin-2-one' ? 'C14 H19 N3 O' 245.320 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5A5P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.03 _exptl_crystal.density_percent_sol 69.48 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M TRISHCL PH 7.0-8.0, 1.2-1.5M AMMONIUM SULPHATE,20-25% PEG3350' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN A200' _diffrn_detector.pdbx_collection_date 2012-03-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5A5P _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 68.76 _reflns.d_resolution_high 2.03 _reflns.number_obs 17065 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.03 _reflns_shell.d_res_low 2.14 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.70 _reflns_shell.pdbx_redundancy 10.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5A5P _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16163 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 68.76 _refine.ls_d_res_high 2.03 _refine.ls_percent_reflns_obs 99.67 _refine.ls_R_factor_obs 0.18864 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18759 _refine.ls_R_factor_R_free 0.20805 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 862 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 28.414 _refine.aniso_B[1][1] -0.51 _refine.aniso_B[2][2] -0.51 _refine.aniso_B[3][3] 0.77 _refine.aniso_B[1][2] -0.26 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.137 _refine.pdbx_overall_ESU_R_Free 0.124 _refine.overall_SU_ML 0.085 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.663 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1084 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 215 _refine_hist.number_atoms_total 1330 _refine_hist.d_res_high 2.03 _refine_hist.d_res_low 68.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.019 ? 1142 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 808 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.849 1.985 ? 1542 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.778 3.000 ? 1957 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.083 5.000 ? 131 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.698 23.607 ? 61 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.075 15.000 ? 213 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6.486 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.047 0.200 ? 172 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.021 ? 1234 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 233 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.033 _refine_ls_shell.d_res_low 2.086 _refine_ls_shell.number_reflns_R_work 1009 _refine_ls_shell.R_factor_R_work 0.224 _refine_ls_shell.percent_reflns_obs 99.81 _refine_ls_shell.R_factor_R_free 0.249 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5A5P _struct.title 'Crystal structure of human ATAD2 bromodomain in complex with 8-2-(dimethylamino)ethylamino-3-methyl-1,2-dihydroquinolin-2-one' _struct.pdbx_descriptor 'ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2 (E.C.3.6.1.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5A5P _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, INHIBITOR, ATAD2, BROMODOMAIN, EPIGENETICS, ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ILE A 24 ? SER A 979 ILE A 1002 1 ? 24 HELX_P HELX_P2 2 ASP A 25 ? THR A 32 ? ASP A 1003 THR A 1010 5 ? 8 HELX_P HELX_P3 3 ASP A 42 ? ILE A 47 ? ASP A 1020 ILE A 1025 1 ? 6 HELX_P HELX_P4 4 ASP A 52 ? LEU A 62 ? ASP A 1030 LEU A 1040 1 ? 11 HELX_P HELX_P5 5 THR A 67 ? ASN A 86 ? THR A 1045 ASN A 1064 1 ? 20 HELX_P HELX_P6 6 ASP A 90 ? LEU A 115 ? ASP A 1068 LEU A 1093 1 ? 26 HELX_P HELX_P7 7 ASP A 116 ? ARG A 130 ? ASP A 1094 ARG A 1108 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 2109' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 2110' AC3 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE JTF A 2111' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 2112' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLU A 10 ? GLU A 988 . ? 1_555 ? 2 AC1 7 LEU A 115 ? LEU A 1093 . ? 1_555 ? 3 AC1 7 ASP A 116 ? ASP A 1094 . ? 1_555 ? 4 AC1 7 PHE A 119 ? PHE A 1097 . ? 1_555 ? 5 AC1 7 HOH F . ? HOH A 3210 . ? 1_555 ? 6 AC1 7 HOH F . ? HOH A 3211 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH A 3212 . ? 1_555 ? 8 AC2 7 HIS A 20 ? HIS A 998 . ? 12_564 ? 9 AC2 7 GLU A 113 ? GLU A 1091 . ? 1_555 ? 10 AC2 7 GLU A 114 ? GLU A 1092 . ? 1_555 ? 11 AC2 7 ASP A 116 ? ASP A 1094 . ? 1_555 ? 12 AC2 7 HOH F . ? HOH A 3195 . ? 1_555 ? 13 AC2 7 HOH F . ? HOH A 3213 . ? 1_555 ? 14 AC2 7 HOH F . ? HOH A 3214 . ? 1_555 ? 15 AC3 9 VAL A 30 ? VAL A 1008 . ? 1_555 ? 16 AC3 9 VAL A 35 ? VAL A 1013 . ? 1_555 ? 17 AC3 9 VAL A 40 ? VAL A 1018 . ? 1_555 ? 18 AC3 9 TYR A 85 ? TYR A 1063 . ? 1_555 ? 19 AC3 9 ASN A 86 ? ASN A 1064 . ? 1_555 ? 20 AC3 9 ASP A 93 ? ASP A 1071 . ? 1_555 ? 21 AC3 9 ILE A 96 ? ILE A 1074 . ? 1_555 ? 22 AC3 9 HOH F . ? HOH A 3104 . ? 1_555 ? 23 AC3 9 HOH F . ? HOH A 3160 . ? 1_555 ? 24 AC4 7 ARG A 9 ? ARG A 987 . ? 1_555 ? 25 AC4 7 ARG A 12 ? ARG A 990 . ? 1_555 ? 26 AC4 7 ARG A 16 ? ARG A 994 . ? 1_555 ? 27 AC4 7 ARG A 89 ? ARG A 1067 . ? 6_664 ? 28 AC4 7 ARG A 94 ? ARG A 1072 . ? 6_664 ? 29 AC4 7 HOH F . ? HOH A 3074 . ? 1_555 ? 30 AC4 7 HOH F . ? HOH A 3161 . ? 6_664 ? # _database_PDB_matrix.entry_id 5A5P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5A5P _atom_sites.fract_transf_matrix[1][1] 0.012596 _atom_sites.fract_transf_matrix[1][2] 0.007272 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014544 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007305 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 979 979 SER SER A . n A 1 2 MET 2 980 980 MET MET A . n A 1 3 GLN 3 981 981 GLN GLN A . n A 1 4 GLU 4 982 982 GLU GLU A . n A 1 5 GLU 5 983 983 GLU GLU A . n A 1 6 ASP 6 984 984 ASP ASP A . n A 1 7 THR 7 985 985 THR THR A . n A 1 8 PHE 8 986 986 PHE PHE A . n A 1 9 ARG 9 987 987 ARG ARG A . n A 1 10 GLU 10 988 988 GLU GLU A . n A 1 11 LEU 11 989 989 LEU LEU A . n A 1 12 ARG 12 990 990 ARG ARG A . n A 1 13 ILE 13 991 991 ILE ILE A . n A 1 14 PHE 14 992 992 PHE PHE A . n A 1 15 LEU 15 993 993 LEU LEU A . n A 1 16 ARG 16 994 994 ARG ARG A . n A 1 17 ASN 17 995 995 ASN ASN A . n A 1 18 VAL 18 996 996 VAL VAL A . n A 1 19 THR 19 997 997 THR THR A . n A 1 20 HIS 20 998 998 HIS HIS A . n A 1 21 ARG 21 999 999 ARG ARG A . n A 1 22 LEU 22 1000 1000 LEU LEU A . n A 1 23 ALA 23 1001 1001 ALA ALA A . n A 1 24 ILE 24 1002 1002 ILE ILE A . n A 1 25 ASP 25 1003 1003 ASP ASP A . n A 1 26 LYS 26 1004 1004 LYS LYS A . n A 1 27 ARG 27 1005 1005 ARG ARG A . n A 1 28 PHE 28 1006 1006 PHE PHE A . n A 1 29 ARG 29 1007 1007 ARG ARG A . n A 1 30 VAL 30 1008 1008 VAL VAL A . n A 1 31 PHE 31 1009 1009 PHE PHE A . n A 1 32 THR 32 1010 1010 THR THR A . n A 1 33 LYS 33 1011 1011 LYS LYS A . n A 1 34 PRO 34 1012 1012 PRO PRO A . n A 1 35 VAL 35 1013 1013 VAL VAL A . n A 1 36 ASP 36 1014 1014 ASP ASP A . n A 1 37 PRO 37 1015 1015 PRO PRO A . n A 1 38 ASP 38 1016 1016 ASP ASP A . n A 1 39 GLU 39 1017 1017 GLU GLU A . n A 1 40 VAL 40 1018 1018 VAL VAL A . n A 1 41 PRO 41 1019 1019 PRO PRO A . n A 1 42 ASP 42 1020 1020 ASP ASP A . n A 1 43 TYR 43 1021 1021 TYR TYR A . n A 1 44 VAL 44 1022 1022 VAL VAL A . n A 1 45 THR 45 1023 1023 THR THR A . n A 1 46 VAL 46 1024 1024 VAL VAL A . n A 1 47 ILE 47 1025 1025 ILE ILE A . n A 1 48 LYS 48 1026 1026 LYS LYS A . n A 1 49 GLN 49 1027 1027 GLN GLN A . n A 1 50 PRO 50 1028 1028 PRO PRO A . n A 1 51 MET 51 1029 1029 MET MET A . n A 1 52 ASP 52 1030 1030 ASP ASP A . n A 1 53 LEU 53 1031 1031 LEU LEU A . n A 1 54 SER 54 1032 1032 SER SER A . n A 1 55 SER 55 1033 1033 SER SER A . n A 1 56 VAL 56 1034 1034 VAL VAL A . n A 1 57 ILE 57 1035 1035 ILE ILE A . n A 1 58 SER 58 1036 1036 SER SER A . n A 1 59 LYS 59 1037 1037 LYS LYS A . n A 1 60 ILE 60 1038 1038 ILE ILE A . n A 1 61 ASP 61 1039 1039 ASP ASP A . n A 1 62 LEU 62 1040 1040 LEU LEU A . n A 1 63 HIS 63 1041 1041 HIS HIS A . n A 1 64 LYS 64 1042 1042 LYS LYS A . n A 1 65 TYR 65 1043 1043 TYR TYR A . n A 1 66 LEU 66 1044 1044 LEU LEU A . n A 1 67 THR 67 1045 1045 THR THR A . n A 1 68 VAL 68 1046 1046 VAL VAL A . n A 1 69 LYS 69 1047 1047 LYS LYS A . n A 1 70 ASP 70 1048 1048 ASP ASP A . n A 1 71 TYR 71 1049 1049 TYR TYR A . n A 1 72 LEU 72 1050 1050 LEU LEU A . n A 1 73 ARG 73 1051 1051 ARG ARG A . n A 1 74 ASP 74 1052 1052 ASP ASP A . n A 1 75 ILE 75 1053 1053 ILE ILE A . n A 1 76 ASP 76 1054 1054 ASP ASP A . n A 1 77 LEU 77 1055 1055 LEU LEU A . n A 1 78 ILE 78 1056 1056 ILE ILE A . n A 1 79 CYS 79 1057 1057 CYS CYS A . n A 1 80 SER 80 1058 1058 SER SER A . n A 1 81 ASN 81 1059 1059 ASN ASN A . n A 1 82 ALA 82 1060 1060 ALA ALA A . n A 1 83 LEU 83 1061 1061 LEU LEU A . n A 1 84 GLU 84 1062 1062 GLU GLU A . n A 1 85 TYR 85 1063 1063 TYR TYR A . n A 1 86 ASN 86 1064 1064 ASN ASN A . n A 1 87 PRO 87 1065 1065 PRO PRO A . n A 1 88 ASP 88 1066 1066 ASP ASP A . n A 1 89 ARG 89 1067 1067 ARG ARG A . n A 1 90 ASP 90 1068 1068 ASP ASP A . n A 1 91 PRO 91 1069 1069 PRO PRO A . n A 1 92 GLY 92 1070 1070 GLY GLY A . n A 1 93 ASP 93 1071 1071 ASP ASP A . n A 1 94 ARG 94 1072 1072 ARG ARG A . n A 1 95 LEU 95 1073 1073 LEU LEU A . n A 1 96 ILE 96 1074 1074 ILE ILE A . n A 1 97 ARG 97 1075 1075 ARG ARG A . n A 1 98 HIS 98 1076 1076 HIS HIS A . n A 1 99 ARG 99 1077 1077 ARG ARG A . n A 1 100 ALA 100 1078 1078 ALA ALA A . n A 1 101 CYS 101 1079 1079 CYS CYS A . n A 1 102 ALA 102 1080 1080 ALA ALA A . n A 1 103 LEU 103 1081 1081 LEU LEU A . n A 1 104 ARG 104 1082 1082 ARG ARG A . n A 1 105 ASP 105 1083 1083 ASP ASP A . n A 1 106 THR 106 1084 1084 THR THR A . n A 1 107 ALA 107 1085 1085 ALA ALA A . n A 1 108 TYR 108 1086 1086 TYR TYR A . n A 1 109 ALA 109 1087 1087 ALA ALA A . n A 1 110 ILE 110 1088 1088 ILE ILE A . n A 1 111 ILE 111 1089 1089 ILE ILE A . n A 1 112 LYS 112 1090 1090 LYS LYS A . n A 1 113 GLU 113 1091 1091 GLU GLU A . n A 1 114 GLU 114 1092 1092 GLU GLU A . n A 1 115 LEU 115 1093 1093 LEU LEU A . n A 1 116 ASP 116 1094 1094 ASP ASP A . n A 1 117 GLU 117 1095 1095 GLU GLU A . n A 1 118 ASP 118 1096 1096 ASP ASP A . n A 1 119 PHE 119 1097 1097 PHE PHE A . n A 1 120 GLU 120 1098 1098 GLU GLU A . n A 1 121 GLN 121 1099 1099 GLN GLN A . n A 1 122 LEU 122 1100 1100 LEU LEU A . n A 1 123 CYS 123 1101 1101 CYS CYS A . n A 1 124 GLU 124 1102 1102 GLU GLU A . n A 1 125 GLU 125 1103 1103 GLU GLU A . n A 1 126 ILE 126 1104 1104 ILE ILE A . n A 1 127 GLN 127 1105 1105 GLN GLN A . n A 1 128 GLU 128 1106 1106 GLU GLU A . n A 1 129 SER 129 1107 1107 SER SER A . n A 1 130 ARG 130 1108 1108 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 2109 2109 EDO EDO A . C 2 EDO 1 2110 2110 EDO EDO A . D 3 JTF 1 2111 2111 JTF JTF A . E 4 SO4 1 2112 2112 SO4 SO4 A . F 5 HOH 1 3001 3001 HOH HOH A . F 5 HOH 2 3002 3002 HOH HOH A . F 5 HOH 3 3003 3003 HOH HOH A . F 5 HOH 4 3004 3004 HOH HOH A . F 5 HOH 5 3005 3005 HOH HOH A . F 5 HOH 6 3006 3006 HOH HOH A . F 5 HOH 7 3007 3007 HOH HOH A . F 5 HOH 8 3008 3008 HOH HOH A . F 5 HOH 9 3009 3009 HOH HOH A . F 5 HOH 10 3010 3010 HOH HOH A . F 5 HOH 11 3011 3011 HOH HOH A . F 5 HOH 12 3012 3012 HOH HOH A . F 5 HOH 13 3013 3013 HOH HOH A . F 5 HOH 14 3014 3014 HOH HOH A . F 5 HOH 15 3015 3015 HOH HOH A . F 5 HOH 16 3016 3016 HOH HOH A . F 5 HOH 17 3017 3017 HOH HOH A . F 5 HOH 18 3018 3018 HOH HOH A . F 5 HOH 19 3019 3019 HOH HOH A . F 5 HOH 20 3020 3020 HOH HOH A . F 5 HOH 21 3021 3021 HOH HOH A . F 5 HOH 22 3022 3022 HOH HOH A . F 5 HOH 23 3023 3023 HOH HOH A . F 5 HOH 24 3024 3024 HOH HOH A . F 5 HOH 25 3025 3025 HOH HOH A . F 5 HOH 26 3026 3026 HOH HOH A . F 5 HOH 27 3027 3027 HOH HOH A . F 5 HOH 28 3028 3028 HOH HOH A . F 5 HOH 29 3029 3029 HOH HOH A . F 5 HOH 30 3030 3030 HOH HOH A . F 5 HOH 31 3031 3031 HOH HOH A . F 5 HOH 32 3032 3032 HOH HOH A . F 5 HOH 33 3033 3033 HOH HOH A . F 5 HOH 34 3034 3034 HOH HOH A . F 5 HOH 35 3035 3035 HOH HOH A . F 5 HOH 36 3036 3036 HOH HOH A . F 5 HOH 37 3037 3037 HOH HOH A . F 5 HOH 38 3038 3038 HOH HOH A . F 5 HOH 39 3039 3039 HOH HOH A . F 5 HOH 40 3040 3040 HOH HOH A . F 5 HOH 41 3041 3041 HOH HOH A . F 5 HOH 42 3042 3042 HOH HOH A . F 5 HOH 43 3043 3043 HOH HOH A . F 5 HOH 44 3044 3044 HOH HOH A . F 5 HOH 45 3045 3045 HOH HOH A . F 5 HOH 46 3046 3046 HOH HOH A . F 5 HOH 47 3047 3047 HOH HOH A . F 5 HOH 48 3048 3048 HOH HOH A . F 5 HOH 49 3049 3049 HOH HOH A . F 5 HOH 50 3050 3050 HOH HOH A . F 5 HOH 51 3051 3051 HOH HOH A . F 5 HOH 52 3052 3052 HOH HOH A . F 5 HOH 53 3053 3053 HOH HOH A . F 5 HOH 54 3054 3054 HOH HOH A . F 5 HOH 55 3055 3055 HOH HOH A . F 5 HOH 56 3056 3056 HOH HOH A . F 5 HOH 57 3057 3057 HOH HOH A . F 5 HOH 58 3058 3058 HOH HOH A . F 5 HOH 59 3059 3059 HOH HOH A . F 5 HOH 60 3060 3060 HOH HOH A . F 5 HOH 61 3061 3061 HOH HOH A . F 5 HOH 62 3062 3062 HOH HOH A . F 5 HOH 63 3063 3063 HOH HOH A . F 5 HOH 64 3064 3064 HOH HOH A . F 5 HOH 65 3065 3065 HOH HOH A . F 5 HOH 66 3066 3066 HOH HOH A . F 5 HOH 67 3067 3067 HOH HOH A . F 5 HOH 68 3068 3068 HOH HOH A . F 5 HOH 69 3069 3069 HOH HOH A . F 5 HOH 70 3070 3070 HOH HOH A . F 5 HOH 71 3071 3071 HOH HOH A . F 5 HOH 72 3072 3072 HOH HOH A . F 5 HOH 73 3073 3073 HOH HOH A . F 5 HOH 74 3074 3074 HOH HOH A . F 5 HOH 75 3075 3075 HOH HOH A . F 5 HOH 76 3076 3076 HOH HOH A . F 5 HOH 77 3077 3077 HOH HOH A . F 5 HOH 78 3078 3078 HOH HOH A . F 5 HOH 79 3079 3079 HOH HOH A . F 5 HOH 80 3080 3080 HOH HOH A . F 5 HOH 81 3081 3081 HOH HOH A . F 5 HOH 82 3082 3082 HOH HOH A . F 5 HOH 83 3083 3083 HOH HOH A . F 5 HOH 84 3084 3084 HOH HOH A . F 5 HOH 85 3085 3085 HOH HOH A . F 5 HOH 86 3086 3086 HOH HOH A . F 5 HOH 87 3087 3087 HOH HOH A . F 5 HOH 88 3088 3088 HOH HOH A . F 5 HOH 89 3089 3089 HOH HOH A . F 5 HOH 90 3090 3090 HOH HOH A . F 5 HOH 91 3091 3091 HOH HOH A . F 5 HOH 92 3092 3092 HOH HOH A . F 5 HOH 93 3093 3093 HOH HOH A . F 5 HOH 94 3094 3094 HOH HOH A . F 5 HOH 95 3095 3095 HOH HOH A . F 5 HOH 96 3096 3096 HOH HOH A . F 5 HOH 97 3097 3097 HOH HOH A . F 5 HOH 98 3098 3098 HOH HOH A . F 5 HOH 99 3099 3099 HOH HOH A . F 5 HOH 100 3100 3100 HOH HOH A . F 5 HOH 101 3101 3101 HOH HOH A . F 5 HOH 102 3102 3102 HOH HOH A . F 5 HOH 103 3103 3103 HOH HOH A . F 5 HOH 104 3104 3104 HOH HOH A . F 5 HOH 105 3105 3105 HOH HOH A . F 5 HOH 106 3106 3106 HOH HOH A . F 5 HOH 107 3107 3107 HOH HOH A . F 5 HOH 108 3108 3108 HOH HOH A . F 5 HOH 109 3109 3109 HOH HOH A . F 5 HOH 110 3110 3110 HOH HOH A . F 5 HOH 111 3111 3111 HOH HOH A . F 5 HOH 112 3112 3112 HOH HOH A . F 5 HOH 113 3113 3113 HOH HOH A . F 5 HOH 114 3114 3114 HOH HOH A . F 5 HOH 115 3115 3115 HOH HOH A . F 5 HOH 116 3116 3116 HOH HOH A . F 5 HOH 117 3117 3117 HOH HOH A . F 5 HOH 118 3118 3118 HOH HOH A . F 5 HOH 119 3119 3119 HOH HOH A . F 5 HOH 120 3120 3120 HOH HOH A . F 5 HOH 121 3121 3121 HOH HOH A . F 5 HOH 122 3122 3122 HOH HOH A . F 5 HOH 123 3123 3123 HOH HOH A . F 5 HOH 124 3124 3124 HOH HOH A . F 5 HOH 125 3125 3125 HOH HOH A . F 5 HOH 126 3126 3126 HOH HOH A . F 5 HOH 127 3127 3127 HOH HOH A . F 5 HOH 128 3128 3128 HOH HOH A . F 5 HOH 129 3129 3129 HOH HOH A . F 5 HOH 130 3130 3130 HOH HOH A . F 5 HOH 131 3131 3131 HOH HOH A . F 5 HOH 132 3132 3132 HOH HOH A . F 5 HOH 133 3133 3133 HOH HOH A . F 5 HOH 134 3134 3134 HOH HOH A . F 5 HOH 135 3135 3135 HOH HOH A . F 5 HOH 136 3136 3136 HOH HOH A . F 5 HOH 137 3137 3137 HOH HOH A . F 5 HOH 138 3138 3138 HOH HOH A . F 5 HOH 139 3139 3139 HOH HOH A . F 5 HOH 140 3140 3140 HOH HOH A . F 5 HOH 141 3141 3141 HOH HOH A . F 5 HOH 142 3142 3142 HOH HOH A . F 5 HOH 143 3143 3143 HOH HOH A . F 5 HOH 144 3144 3144 HOH HOH A . F 5 HOH 145 3145 3145 HOH HOH A . F 5 HOH 146 3146 3146 HOH HOH A . F 5 HOH 147 3147 3147 HOH HOH A . F 5 HOH 148 3148 3148 HOH HOH A . F 5 HOH 149 3149 3149 HOH HOH A . F 5 HOH 150 3150 3150 HOH HOH A . F 5 HOH 151 3151 3151 HOH HOH A . F 5 HOH 152 3152 3152 HOH HOH A . F 5 HOH 153 3153 3153 HOH HOH A . F 5 HOH 154 3154 3154 HOH HOH A . F 5 HOH 155 3155 3155 HOH HOH A . F 5 HOH 156 3156 3156 HOH HOH A . F 5 HOH 157 3157 3157 HOH HOH A . F 5 HOH 158 3158 3158 HOH HOH A . F 5 HOH 159 3159 3159 HOH HOH A . F 5 HOH 160 3160 3160 HOH HOH A . F 5 HOH 161 3161 3161 HOH HOH A . F 5 HOH 162 3162 3162 HOH HOH A . F 5 HOH 163 3163 3163 HOH HOH A . F 5 HOH 164 3164 3164 HOH HOH A . F 5 HOH 165 3165 3165 HOH HOH A . F 5 HOH 166 3166 3166 HOH HOH A . F 5 HOH 167 3167 3167 HOH HOH A . F 5 HOH 168 3168 3168 HOH HOH A . F 5 HOH 169 3169 3169 HOH HOH A . F 5 HOH 170 3170 3170 HOH HOH A . F 5 HOH 171 3171 3171 HOH HOH A . F 5 HOH 172 3172 3172 HOH HOH A . F 5 HOH 173 3173 3173 HOH HOH A . F 5 HOH 174 3174 3174 HOH HOH A . F 5 HOH 175 3175 3175 HOH HOH A . F 5 HOH 176 3176 3176 HOH HOH A . F 5 HOH 177 3177 3177 HOH HOH A . F 5 HOH 178 3178 3178 HOH HOH A . F 5 HOH 179 3179 3179 HOH HOH A . F 5 HOH 180 3180 3180 HOH HOH A . F 5 HOH 181 3181 3181 HOH HOH A . F 5 HOH 182 3182 3182 HOH HOH A . F 5 HOH 183 3183 3183 HOH HOH A . F 5 HOH 184 3184 3184 HOH HOH A . F 5 HOH 185 3185 3185 HOH HOH A . F 5 HOH 186 3186 3186 HOH HOH A . F 5 HOH 187 3187 3187 HOH HOH A . F 5 HOH 188 3188 3188 HOH HOH A . F 5 HOH 189 3189 3189 HOH HOH A . F 5 HOH 190 3190 3190 HOH HOH A . F 5 HOH 191 3191 3191 HOH HOH A . F 5 HOH 192 3192 3192 HOH HOH A . F 5 HOH 193 3193 3193 HOH HOH A . F 5 HOH 194 3194 3194 HOH HOH A . F 5 HOH 195 3195 3195 HOH HOH A . F 5 HOH 196 3196 3196 HOH HOH A . F 5 HOH 197 3197 3197 HOH HOH A . F 5 HOH 198 3198 3198 HOH HOH A . F 5 HOH 199 3199 3199 HOH HOH A . F 5 HOH 200 3200 3200 HOH HOH A . F 5 HOH 201 3201 3201 HOH HOH A . F 5 HOH 202 3202 3202 HOH HOH A . F 5 HOH 203 3203 3203 HOH HOH A . F 5 HOH 204 3204 3204 HOH HOH A . F 5 HOH 205 3205 3205 HOH HOH A . F 5 HOH 206 3206 3206 HOH HOH A . F 5 HOH 207 3207 3207 HOH HOH A . F 5 HOH 208 3208 3208 HOH HOH A . F 5 HOH 209 3209 3209 HOH HOH A . F 5 HOH 210 3210 3210 HOH HOH A . F 5 HOH 211 3211 3211 HOH HOH A . F 5 HOH 212 3212 3212 HOH HOH A . F 5 HOH 213 3213 3213 HOH HOH A . F 5 HOH 214 3214 3214 HOH HOH A . F 5 HOH 215 3215 3215 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-22 2 'Structure model' 1 1 2015-08-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -12.5944 _pdbx_refine_tls.origin_y 41.0268 _pdbx_refine_tls.origin_z 3.4205 _pdbx_refine_tls.T[1][1] 0.0204 _pdbx_refine_tls.T[2][2] 0.1248 _pdbx_refine_tls.T[3][3] 0.0708 _pdbx_refine_tls.T[1][2] -0.0281 _pdbx_refine_tls.T[1][3] 0.0130 _pdbx_refine_tls.T[2][3] -0.0506 _pdbx_refine_tls.L[1][1] 2.2291 _pdbx_refine_tls.L[2][2] 0.0166 _pdbx_refine_tls.L[3][3] 1.3120 _pdbx_refine_tls.L[1][2] 0.1466 _pdbx_refine_tls.L[1][3] -0.9098 _pdbx_refine_tls.L[2][3] -0.0811 _pdbx_refine_tls.S[1][1] 0.0185 _pdbx_refine_tls.S[1][2] -0.3033 _pdbx_refine_tls.S[1][3] 0.1230 _pdbx_refine_tls.S[2][1] -0.0090 _pdbx_refine_tls.S[2][2] -0.0001 _pdbx_refine_tls.S[2][3] -0.0068 _pdbx_refine_tls.S[3][1] -0.0126 _pdbx_refine_tls.S[3][2] 0.0454 _pdbx_refine_tls.S[3][3] -0.0185 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 979 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 1108 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0117 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 5A5P _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'SM INITIAL TWO RESIDUES LEFT OVER FROM TAG CLEAVAGE' # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 3049 ? 6.46 . 2 1 O ? A HOH 3051 ? . 6.35 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 '8-{[2-(dimethylamino)ethyl]amino}-3-methyl-1,2-dihydroquinolin-2-one' JTF 4 'SULFATE ION' SO4 5 water HOH #