HEADER HYDROLASE 24-JUN-15 5A67 TITLE CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND TITLE 2 MANGANESE ION (FORM B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPHOSPHATE TUNEL METALLOENZYME 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENOSINETRIPHOSPHATASE, ATPASE, TRIPHOSPHATASE, PPPASE, COMPND 5 INORGANIC TRIPHOSPHATASE; COMPND 6 EC: 3.6.1.3, 3.6.1.25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COL0; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS HYDROLASE, INORGANIC POLYPHOSPHATE, TRIPOLYPHOSPHATE, TRIPHOSPHATE KEYWDS 2 TUNNEL METALLOENZYME EXPDTA X-RAY DIFFRACTION AUTHOR J.MARTINEZ,V.TRUFFAULT,M.HOTHORN REVDAT 5 10-JAN-24 5A67 1 REMARK SHEET LINK REVDAT 4 23-AUG-17 5A67 1 REMARK REVDAT 3 07-OCT-15 5A67 1 JRNL REVDAT 2 12-AUG-15 5A67 1 JRNL REVDAT 1 05-AUG-15 5A67 0 JRNL AUTH J.MARTINEZ,V.TRUFFAULT,M.HOTHORN JRNL TITL STRUCTURAL DETERMINANTS FOR SUBSTRATE BINDING AND CATALYSIS JRNL TITL 2 IN TRIPHOSPHATE TUNNEL METALLOENZYMES. JRNL REF J.BIOL.CHEM. V. 290 23348 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26221030 JRNL DOI 10.1074/JBC.M115.674473 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 50172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3302 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.24000 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.892 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1830 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1769 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2494 ; 1.695 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4105 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 6.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;31.646 ;23.587 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;12.377 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2050 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 418 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 859 ; 1.628 ; 1.238 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 858 ; 1.618 ; 1.236 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1080 ; 2.090 ; 1.866 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 971 ; 2.433 ; 1.590 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3599 ; 1.818 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 58 ;44.158 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3741 ;12.438 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3301 5.9402 -25.7904 REMARK 3 T TENSOR REMARK 3 T11: 0.0456 T22: 0.0083 REMARK 3 T33: 0.0235 T12: 0.0020 REMARK 3 T13: 0.0074 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.6531 L22: 3.1854 REMARK 3 L33: 1.1748 L12: 0.5454 REMARK 3 L13: 0.4555 L23: 1.4968 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.0591 S13: 0.0571 REMARK 3 S21: 0.0442 S22: -0.0296 S23: 0.0770 REMARK 3 S31: -0.0270 S32: -0.0563 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4776 -11.8002 -32.3871 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0072 REMARK 3 T33: 0.0165 T12: -0.0006 REMARK 3 T13: 0.0025 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.8154 L22: 0.5035 REMARK 3 L33: 0.3327 L12: 0.1318 REMARK 3 L13: -0.0415 L23: 0.1360 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.1414 S13: -0.0618 REMARK 3 S21: -0.0233 S22: 0.0085 S23: -0.0046 REMARK 3 S31: 0.0052 S32: -0.0017 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2251 -3.2099 -14.9071 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0013 REMARK 3 T33: 0.0211 T12: -0.0017 REMARK 3 T13: -0.0060 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.0956 L22: 0.7321 REMARK 3 L33: 2.3803 L12: -1.1599 REMARK 3 L13: -2.1605 L23: 1.2286 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: -0.0171 S13: -0.0310 REMARK 3 S21: 0.0208 S22: 0.0120 S23: 0.0290 REMARK 3 S31: 0.0466 S32: 0.0285 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8410 6.3272 -9.7047 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0108 REMARK 3 T33: 0.0297 T12: -0.0062 REMARK 3 T13: 0.0028 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.4650 L22: 0.8212 REMARK 3 L33: 0.6144 L12: -0.8224 REMARK 3 L13: 0.0689 L23: 0.0686 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: 0.0171 S13: 0.0187 REMARK 3 S21: 0.0436 S22: -0.0209 S23: 0.0394 REMARK 3 S31: 0.0184 S32: -0.0775 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6828 -5.7983 -10.6455 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.0479 REMARK 3 T33: 0.1015 T12: -0.0165 REMARK 3 T13: 0.0274 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 11.5913 L22: 1.7872 REMARK 3 L33: 0.4089 L12: 3.7085 REMARK 3 L13: -1.4578 L23: -0.7674 REMARK 3 S TENSOR REMARK 3 S11: -0.1052 S12: 0.0234 S13: -0.5862 REMARK 3 S21: -0.0923 S22: 0.0319 S23: -0.2659 REMARK 3 S31: 0.0178 S32: 0.0426 S33: 0.0734 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3111 9.3740 -19.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.0412 T22: 0.0023 REMARK 3 T33: 0.0252 T12: -0.0051 REMARK 3 T13: -0.0030 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.7929 L22: 0.1668 REMARK 3 L33: 1.3729 L12: -0.2585 REMARK 3 L13: 0.8533 L23: -0.1585 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: 0.0118 S13: 0.0241 REMARK 3 S21: -0.0098 S22: 0.0046 S23: -0.0058 REMARK 3 S31: -0.0771 S32: 0.0120 S33: 0.0253 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1487 1.4093 -3.2113 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.0034 REMARK 3 T33: 0.0154 T12: 0.0058 REMARK 3 T13: -0.0068 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.6179 L22: 2.0836 REMARK 3 L33: 1.6425 L12: -0.3697 REMARK 3 L13: 0.2345 L23: -1.4705 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: -0.0265 S13: 0.0034 REMARK 3 S21: -0.0186 S22: -0.0339 S23: -0.0308 REMARK 3 S31: 0.0653 S32: 0.0314 S33: 0.0369 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2632 6.3829 -4.5350 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0055 REMARK 3 T33: 0.0229 T12: 0.0000 REMARK 3 T13: -0.0058 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.2784 L22: 0.2371 REMARK 3 L33: 0.3994 L12: -0.0084 REMARK 3 L13: -0.1558 L23: 0.2587 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: -0.0239 S13: 0.0169 REMARK 3 S21: -0.0015 S22: -0.0227 S23: 0.0164 REMARK 3 S31: -0.0075 S32: -0.0064 S33: 0.0124 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9537 -4.5116 -26.1253 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.0025 REMARK 3 T33: 0.0184 T12: 0.0004 REMARK 3 T13: -0.0060 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.9062 L22: 0.4979 REMARK 3 L33: 0.8716 L12: 0.1858 REMARK 3 L13: -0.7323 L23: -0.2548 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.0374 S13: -0.0018 REMARK 3 S21: -0.0112 S22: 0.0106 S23: 0.0026 REMARK 3 S31: 0.0286 S32: 0.0192 S33: 0.0074 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7739 -0.6086 -30.8354 REMARK 3 T TENSOR REMARK 3 T11: 0.0409 T22: 0.0128 REMARK 3 T33: 0.0233 T12: -0.0021 REMARK 3 T13: -0.0105 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4474 L22: 0.2863 REMARK 3 L33: 0.4464 L12: -0.0030 REMARK 3 L13: -0.3005 L23: -0.0707 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: 0.0620 S13: -0.0004 REMARK 3 S21: -0.0459 S22: -0.0098 S23: 0.0182 REMARK 3 S31: 0.0021 S32: -0.0660 S33: 0.0144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5A67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1290064159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000020, 1.823310 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52725 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.240 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.27 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5A5Y REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350,0.2M NACL, 0.1 M BISTRIS REMARK 280 PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.93400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 60 REMARK 465 VAL A 61 REMARK 465 SER A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 SER A 65 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2003 DISTANCE = 6.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 169 OE2 REMARK 620 2 GLU A 169 OE1 57.1 REMARK 620 3 3PO A1000 O2B 82.4 94.8 REMARK 620 4 3PO A1000 O2G 95.3 152.1 84.7 REMARK 620 5 3PO A1000 O2A 157.7 102.8 90.4 105.1 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PO A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A5Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND REMARK 900 MAGNESIUM ION (FORM A) REMARK 900 RELATED ID: 5A60 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH REMARK 900 TRIPOLYPHOSPHATE AND TWO MAGNESIUM IONS REMARK 900 RELATED ID: 5A61 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX WITH REMARK 900 TRIPOLYPHOSPHATE AND TWO MANGANESE IONS. REMARK 900 RELATED ID: 5A64 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH REMARK 900 THIAMINE TRIPHOSPHATE. REMARK 900 RELATED ID: 5A65 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN COMPLEX WITH REMARK 900 THIAMINE DIPHOSPHATE, ORTHOPHOSPHATE AND MAGNESIUM IONS. REMARK 900 RELATED ID: 5A66 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH TRIPOLYPHOSPHATE AND REMARK 900 MANGANESE ION (FORM A) REMARK 900 RELATED ID: 5A68 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ATTTM3 PRODUCT COMPLEX WITH TWO REMARK 900 ORTHOPHOSPHATES AND MANGANESE IONS (FORM B) DBREF 5A67 A 1 210 UNP Q9SIY3 TTM3_ARATH 1 210 SEQADV 5A67 GLY A -1 UNP Q9SIY3 EXPRESSION TAG SEQADV 5A67 ALA A 0 UNP Q9SIY3 EXPRESSION TAG SEQRES 1 A 212 GLY ALA MET GLU VAL GLU VAL LYS LEU ARG LEU LEU THR SEQRES 2 A 212 ALA ALA ALA HIS LEU ARG LEU THR THR LEU LEU THR PRO SEQRES 3 A 212 TYR HIS LEU LYS THR LEU HIS GLN ARG ASN THR PHE PHE SEQRES 4 A 212 ASP THR PRO LYS ASN ASP LEU SER LEU ARG ARG ALA VAL SEQRES 5 A 212 LEU ARG LEU ARG PHE LEU GLN ASN ALA ALA VAL SER ALA SEQRES 6 A 212 ALA SER PRO SER PRO PRO ARG CYS ILE VAL SER LEU LYS SEQRES 7 A 212 ALA LYS PRO THR LEU ALA ASN GLY ILE SER ARG VAL GLU SEQRES 8 A 212 GLU ASP GLU GLU GLU ILE GLU TYR TRP ILE GLY LYS GLU SEQRES 9 A 212 CYS VAL GLU SER PRO ALA LYS LEU SER ASP ILE GLY SER SEQRES 10 A 212 ARG VAL LEU LYS ARG VAL LYS GLU GLU TYR GLY PHE ASN SEQRES 11 A 212 ASP PHE LEU GLY PHE VAL CYS LEU GLY GLY PHE GLU ASN SEQRES 12 A 212 VAL ARG ASN VAL TYR GLU TRP ARG GLY VAL LYS LEU GLU SEQRES 13 A 212 VAL ASP GLU THR LYS TYR ASP PHE GLY ASN CYS TYR GLU SEQRES 14 A 212 ILE GLU CYS GLU THR GLU GLU PRO GLU ARG VAL LYS THR SEQRES 15 A 212 MET ILE GLU GLU PHE LEU THR GLU GLU LYS ILE GLU PHE SEQRES 16 A 212 SER ASN SER ASP MET THR LYS PHE ALA VAL PHE ARG SER SEQRES 17 A 212 GLY LYS LEU PRO HET MN A 500 1 HET 3PO A1000 13 HETNAM MN MANGANESE (II) ION HETNAM 3PO TRIPHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 3PO H5 O10 P3 FORMUL 4 HOH *244(H2 O) HELIX 1 1 THR A 11 THR A 23 1 13 HELIX 2 2 ASN A 42 ARG A 47 1 6 HELIX 3 3 GLU A 96 SER A 106 1 11 HELIX 4 4 PRO A 107 ILE A 113 5 7 HELIX 5 5 SER A 115 GLY A 126 1 12 HELIX 6 6 GLU A 174 GLU A 189 1 16 HELIX 7 7 THR A 199 GLY A 207 1 9 SHEET 1 AA 9 ALA A 0 LEU A 9 0 SHEET 2 AA 9 ILE A 85 ILE A 95 -1 O SER A 86 N GLU A 4 SHEET 3 AA 9 ARG A 70 ALA A 82 -1 O CYS A 71 N ILE A 95 SHEET 4 AA 9 ALA A 49 ASN A 58 -1 O VAL A 50 N LYS A 76 SHEET 5 AA 9 HIS A 26 ASP A 38 -1 O HIS A 31 N GLN A 57 SHEET 6 AA 9 VAL A 134 TRP A 148 -1 O VAL A 134 N ASP A 38 SHEET 7 AA 9 VAL A 151 TYR A 160 -1 O VAL A 151 N TRP A 148 SHEET 8 AA 9 GLY A 163 GLU A 171 -1 O GLY A 163 N TYR A 160 SHEET 9 AA 9 ALA A 0 LEU A 9 1 O MET A 1 N VAL A 3 LINK OE2 GLU A 169 MN MN A 500 1555 1555 2.37 LINK OE1 GLU A 169 MN MN A 500 1555 1555 2.22 LINK MN MN A 500 O2B 3PO A1000 1555 1555 2.25 LINK MN MN A 500 O2G 3PO A1000 1555 1555 2.18 LINK MN MN A 500 O2A 3PO A1000 1555 1555 2.34 SITE 1 AC1 3 GLU A 4 GLU A 169 3PO A1000 SITE 1 AC2 16 GLU A 2 GLU A 4 LYS A 6 ARG A 52 SITE 2 AC2 16 ARG A 54 LYS A 76 ARG A 143 GLU A 169 SITE 3 AC2 16 THR A 199 LYS A 200 MN A 500 HOH A2008 SITE 4 AC2 16 HOH A2045 HOH A2079 HOH A2098 HOH A2232 CRYST1 44.375 33.868 72.216 90.00 94.97 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022535 0.000000 0.001960 0.00000 SCALE2 0.000000 0.029526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013900 0.00000