HEADER STRUCTURAL PROTEIN 01-JUL-15 5A6S TITLE CRYSTAL STRUCTURE OF THE CTP1L ENDOLYSIN REVEALS HOW ITS ACTIVITY IS TITLE 2 REGULATED BY A SECONDARY TRANSLATION PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOLYSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENDOLYSIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: TRUNCATED CELL WALL BINDING DOMAIN, RESIDUES 195-274; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHAGE PHICTP1; SOURCE 3 ORGANISM_TAXID: 871584; SOURCE 4 STRAIN: CTP1L; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 OTHER_DETAILS: TARGET AGAINST CLOSTRIDIUM TYROBUTYRICUM; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHAGE PHICTP1; SOURCE 11 ORGANISM_TAXID: 871584; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS STRUCTURAL PROTEIN, ENDOLYSIN, SECONDARY TRANSLATION PRODUCT, KEYWDS 2 BACTERIOPHAGE EXPDTA X-RAY DIFFRACTION AUTHOR M.DUNNE,S.LEICHT,B.KRICHEL,H.D.T.MERTENS,A.THOMPSON,J.KRIJGSVELD, AUTHOR 2 D.I.SVERGUN,N.GOMEZTORRES,S.GARDE,C.UETRECHT,A.NARBAD,M.J.MAYER, AUTHOR 3 R.MEIJERS REVDAT 3 10-JAN-24 5A6S 1 REMARK SHEET REVDAT 2 16-MAR-16 5A6S 1 JRNL REVDAT 1 30-DEC-15 5A6S 0 JRNL AUTH M.DUNNE,S.LEICHT,B.KRICHEL,H.D.T.MERTENS,A.THOMPSON, JRNL AUTH 2 J.KRIJGSVELD,D.I.SVERGUN,N.GOMEZ-TORRES,S.GARDE,C.UETRECHT, JRNL AUTH 3 A.NARBAD,M.J.MAYER,R.MEIJERS JRNL TITL CRYSTAL STRUCTURE OF THE CTP1L ENDOLYSIN REVEALS HOW ITS JRNL TITL 2 ACTIVITY IS REGULATED BY A SECONDARY TRANSLATION PRODUCT. JRNL REF J.BIOL.CHEM. V. 291 4882 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 26683375 JRNL DOI 10.1074/JBC.M115.671172 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2132 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2869 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2692 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3881 ; 1.800 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6173 ; 0.865 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 6.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;38.175 ;25.149 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;12.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.649 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3275 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 681 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5A6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SI 1 1 1 REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40146 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1JFX AND 2NW0 HYBRID MODEL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-10 % PEG 8000, 20 MM TRIS PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.22850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 68.09850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 68.09850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.11425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 68.09850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 68.09850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.34275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 68.09850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.09850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.11425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 68.09850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.09850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.34275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.22850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 56.45700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 274 CA C O CB CG CD CE REMARK 470 LYS A 274 NZ REMARK 470 LYS B 274 CA C O CB CG CD CE REMARK 470 LYS B 274 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2349 O HOH A 2372 2.14 REMARK 500 O HOH B 2003 O HOH B 2037 2.15 REMARK 500 O HOH A 2147 O HOH A 2159 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2094 O HOH A 2366 3454 2.10 REMARK 500 O HOH A 2233 O HOH B 2007 7555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 203 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 94 11.96 -148.81 REMARK 500 SER A 133 -6.79 -59.91 REMARK 500 CYS A 136 0.86 -64.68 REMARK 500 LEU A 154 -63.96 74.47 REMARK 500 GLU A 194 115.99 -20.82 REMARK 500 ASP B 203 137.73 -37.76 REMARK 500 THR B 247 141.57 -39.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2017 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A2021 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A2126 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2394 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH B2009 DISTANCE = 6.85 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1277 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CHAIN IS A TRUNCATED CELL WALL BINDING DOMAIN THAT IS REMARK 999 THE RESULT OF SECONDARY TRANSLATION WITHIN THE ENDOLYSIN REMARK 999 GENE. THE VAL195 IS REPLACED BY A METHIONINE DBREF 5A6S A 1 274 UNP D9ZNF3 D9ZNF3_9CAUD 1 274 DBREF 5A6S B 195 274 UNP D9ZNF3 D9ZNF3_9CAUD 195 274 SEQADV 5A6S MET A -19 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S GLY A -18 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S SER A -17 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S SER A -16 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S HIS A -15 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S HIS A -14 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S HIS A -13 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S HIS A -12 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S HIS A -11 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S HIS A -10 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S SER A -9 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S SER A -8 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S GLY A -7 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S LEU A -6 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S VAL A -5 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S PRO A -4 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S ARG A -3 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S GLY A -2 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S SER A -1 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S HIS A 0 UNP D9ZNF3 EXPRESSION TAG SEQADV 5A6S MET B 195 UNP D9ZNF3 VAL 195 ENGINEERED MUTATION SEQRES 1 A 294 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 294 LEU VAL PRO ARG GLY SER HIS MET LYS LYS ILE ALA ASP SEQRES 3 A 294 ILE SER ASN LEU ASN GLY ASN VAL ASP VAL LYS LEU LEU SEQRES 4 A 294 PHE ASN LEU GLY TYR ILE GLY ILE ILE ALA LYS ALA SER SEQRES 5 A 294 GLU GLY GLY THR PHE VAL ASP LYS TYR TYR LYS GLN ASN SEQRES 6 A 294 TYR THR ASN THR LYS ALA GLN GLY LYS ILE THR GLY ALA SEQRES 7 A 294 TYR HIS PHE ALA ASN PHE SER THR ILE ALA LYS ALA GLN SEQRES 8 A 294 GLN GLU ALA ASN PHE PHE LEU ASN CYS ILE ALA GLY THR SEQRES 9 A 294 THR PRO ASP PHE VAL VAL LEU ASP LEU GLU GLN GLN CYS SEQRES 10 A 294 THR GLY ASP ILE THR ASP ALA CYS LEU ALA PHE LEU ASN SEQRES 11 A 294 ILE VAL ALA LYS LYS PHE LYS CYS VAL VAL TYR CYS ASN SEQRES 12 A 294 SER SER PHE ILE LYS GLU HIS LEU ASN SER LYS ILE CYS SEQRES 13 A 294 ALA TYR PRO LEU TRP ILE ALA ASN TYR GLY VAL ALA THR SEQRES 14 A 294 PRO ALA PHE THR LEU TRP THR LYS TYR ALA MET TRP GLN SEQRES 15 A 294 PHE THR GLU LYS GLY GLN VAL SER GLY ILE SER GLY TYR SEQRES 16 A 294 ILE ASP PHE SER TYR ILE THR ASP GLU PHE ILE LYS TYR SEQRES 17 A 294 ILE LYS GLY GLU ASP GLU VAL GLU ASN LEU VAL VAL TYR SEQRES 18 A 294 ASN ASP GLY ALA ASP GLN ARG ALA ALA GLU TYR LEU ALA SEQRES 19 A 294 ASP ARG LEU ALA CYS PRO THR ILE ASN ASN ALA ARG LYS SEQRES 20 A 294 PHE ASP TYR SER ASN VAL LYS ASN VAL TYR ALA VAL GLY SEQRES 21 A 294 GLY ASN LYS GLU GLN TYR THR SER TYR LEU THR THR LEU SEQRES 22 A 294 ILE ALA GLY SER THR ARG TYR THR THR MET GLN ALA VAL SEQRES 23 A 294 LEU ASP TYR ILE LYS ASN LEU LYS SEQRES 1 B 80 MET GLU ASN LEU VAL VAL TYR ASN ASP GLY ALA ASP GLN SEQRES 2 B 80 ARG ALA ALA GLU TYR LEU ALA ASP ARG LEU ALA CYS PRO SEQRES 3 B 80 THR ILE ASN ASN ALA ARG LYS PHE ASP TYR SER ASN VAL SEQRES 4 B 80 LYS ASN VAL TYR ALA VAL GLY GLY ASN LYS GLU GLN TYR SEQRES 5 B 80 THR SER TYR LEU THR THR LEU ILE ALA GLY SER THR ARG SEQRES 6 B 80 TYR THR THR MET GLN ALA VAL LEU ASP TYR ILE LYS ASN SEQRES 7 B 80 LEU LYS HET SO4 A1274 5 HET GOL A1275 6 HET GOL A1276 6 HET 1PE A1277 16 HET GOL B1274 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 1PE C10 H22 O6 FORMUL 8 HOH *480(H2 O) HELIX 1 1 SER A 8 GLY A 12 5 5 HELIX 2 2 ASP A 15 LEU A 22 1 8 HELIX 3 3 TYR A 41 GLN A 52 1 12 HELIX 4 4 THR A 66 ALA A 82 1 17 HELIX 5 5 ILE A 101 ALA A 113 1 13 HELIX 6 6 SER A 124 LEU A 131 1 8 HELIX 7 7 ASN A 132 TYR A 138 5 7 HELIX 8 8 THR A 182 LYS A 190 1 9 HELIX 9 9 ALA A 205 ALA A 218 1 14 HELIX 10 10 ASN A 242 TYR A 246 5 5 HELIX 11 11 THR A 258 LEU A 273 1 16 HELIX 12 12 GLY B 204 ALA B 218 1 15 HELIX 13 13 ASN B 242 TYR B 246 5 5 HELIX 14 14 THR B 258 ASN B 272 1 15 SHEET 1 AA 9 LYS A 2 ILE A 7 0 SHEET 2 AA 9 ILE A 176 ILE A 181 -1 O ASP A 177 N ASP A 6 SHEET 3 AA 9 MET A 160 GLY A 167 -1 O TRP A 161 N TYR A 180 SHEET 4 AA 9 LEU A 140 ALA A 143 1 O ILE A 142 N GLN A 162 SHEET 5 AA 9 CYS A 118 ASN A 123 1 O VAL A 120 N TRP A 141 SHEET 6 AA 9 PHE A 88 ASP A 92 1 O VAL A 89 N VAL A 119 SHEET 7 AA 9 ILE A 55 PHE A 61 1 O ALA A 58 N VAL A 90 SHEET 8 AA 9 GLY A 26 GLU A 33 1 O ILE A 27 N GLY A 57 SHEET 9 AA 9 LYS A 2 ILE A 7 0 SHEET 1 AB 4 THR A 221 ASN A 223 0 SHEET 2 AB 4 VAL A 195 TYR A 201 1 O VAL A 199 N ILE A 222 SHEET 3 AB 4 VAL A 233 VAL A 239 1 N LYS A 234 O VAL A 195 SHEET 4 AB 4 THR A 252 ILE A 254 1 O THR A 252 N ALA A 238 SHEET 1 BA 4 THR B 221 ASN B 223 0 SHEET 2 BA 4 ASN B 197 TYR B 201 1 O VAL B 199 N ILE B 222 SHEET 3 BA 4 ASN B 235 VAL B 239 1 O ASN B 235 N LEU B 198 SHEET 4 BA 4 THR B 252 ILE B 254 1 O THR B 252 N ALA B 238 SITE 1 AC1 7 ASP A 6 TYR A 59 ASP A 92 GLU A 94 SITE 2 AC1 7 TYR A 121 GLN A 162 ASP A 177 SITE 1 AC2 5 ALA A 113 LYS A 115 LYS A 117 HOH A2205 SITE 2 AC2 5 HOH A2391 SITE 1 AC3 2 ASN B 224 THR B 247 SITE 1 AC4 3 MET A 1 TYR A 180 HOH A2392 SITE 1 AC5 9 ASP A 15 ASN A 21 LYS A 50 ALA A 51 SITE 2 AC5 9 GLN A 52 GLY A 53 LYS A 54 ASP A 87 SITE 3 AC5 9 HOH A2059 CRYST1 136.197 136.197 56.457 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017713 0.00000