HEADER TRANSLATION 01-JUL-15 5A6U TITLE NATIVE MAMMALIAN RIBOSOME-BOUND SEC61 PROTEIN-CONDUCTING CHANNEL IN TITLE 2 THE 'NON-INSERTING' STATE CAVEAT 5A6U CYS A 188 HAS WRONG CHIRALITY AT ATOM CA ILE A 447 HAS WRONG CAVEAT 2 5A6U CHIRALITY AT ATOM CB CYS A 188 HAS WRONG CHIRALITY FOR AN CAVEAT 3 5A6U L-AMINO ACID ILE A 447 C-BETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEC61A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-476; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SEC61B; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 61-96; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SEC61G; COMPND 11 CHAIN: G; COMPND 12 FRAGMENT: UNP RESIDUES 7-68 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 ORGAN: PANCREAS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 8 ORGANISM_COMMON: DOG; SOURCE 9 ORGANISM_TAXID: 9615; SOURCE 10 ORGAN: PANCREAS; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 13 ORGANISM_COMMON: DOG; SOURCE 14 ORGANISM_TAXID: 9615; SOURCE 15 ORGAN: PANCREAS KEYWDS TRANSLATION, RIBOSOME, SEC61, TRANSLOCON, ENDOPLASMIC RETICULUM, KEYWDS 2 CRYOELECTRON TOMOGRAPHY, SUBTOMOGRAM ANALYSIS EXPDTA ELECTRON MICROSCOPY AUTHOR S.PFEFFER,L.BURBAUM,P.UNVERDORBEN,M.PECH,Y.CHEN,R.ZIMMERMANN, AUTHOR 2 R.BECKMANN,F.FOERSTER REVDAT 5 08-MAY-24 5A6U 1 REMARK REVDAT 4 21-AUG-19 5A6U 1 REMARK REVDAT 3 23-AUG-17 5A6U 1 CAVEAT REMARK HELIX SHEET REVDAT 3 2 1 LINK ATOM REVDAT 2 28-OCT-15 5A6U 1 JRNL REVDAT 1 07-OCT-15 5A6U 0 JRNL AUTH S.PFEFFER,L.BURBAUM,P.UNVERDORBEN,M.PECH,Y.CHEN, JRNL AUTH 2 R.ZIMMERMANN,R.BECKMANN,F.FORSTER JRNL TITL STRUCTURE OF THE NATIVE SEC61 PROTEIN-CONDUCTING CHANNEL. JRNL REF NAT.COMMUN. V. 6 8403 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26411746 JRNL DOI 10.1038/NCOMMS9403 REMARK 2 REMARK 2 RESOLUTION. 9.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : MDFF, AV3, PYTOM, TOM TOOLBOX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3J7Q REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : PSEUDO-ENERGY REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--FLEXIBLE REFINEMENT PROTOCOL--CRYO-EM REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.620 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 9.000 REMARK 3 NUMBER OF PARTICLES : 17653 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: CROSS- -CORRELATION REMARK 3 WITH RIBOSOME DENSITIES REMARK 3 REMARK 3 OTHER DETAILS: WEIGHTED BACKPROJECTION AND CONSTRAINED SUBTOMOGRAM REMARK 3 AVERAGING SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD- REMARK 3 3068. (DEPOSITION ID: 13544). REMARK 4 REMARK 4 5A6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290064230. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : TOMOGRAPHY REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ER-DERIVED MICROSOMES REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE-PROPANE MIXTURE, REMARK 245 HUMIDITY- 70, INSTRUMENT- FEI REMARK 245 VITROBOT MARK IV, METHOD- BLOT REMARK 245 3 SECONDS BEFORE PLUNGING., REMARK 245 SAMPLE BUFFER : 20MM HEPES, 50MM KCL, 2MM MGCL2 REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 18-JUN-14 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : -20.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 20.00 REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 48 REMARK 465 PRO A 49 REMARK 465 LEU A 50 REMARK 465 PHE A 51 REMARK 465 GLY A 52 REMARK 465 ILE A 53 REMARK 465 MET A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 ASP A 57 REMARK 465 GLY A 135 REMARK 465 MET A 136 REMARK 465 TYR A 137 REMARK 465 GLY A 138 REMARK 465 ASP A 139 REMARK 465 PRO A 140 REMARK 465 SER A 141 REMARK 465 GLU A 142 REMARK 465 MET A 143 REMARK 465 GLY A 144 REMARK 465 ALA A 145 REMARK 465 GLY A 146 REMARK 465 ILE A 147 REMARK 465 GLY A 314 REMARK 465 ASN A 315 REMARK 465 LEU A 316 REMARK 465 LEU A 317 REMARK 465 VAL A 318 REMARK 465 SER A 319 REMARK 465 LEU A 320 REMARK 465 LEU A 321 REMARK 465 GLY A 322 REMARK 465 THR A 323 REMARK 465 TRP A 324 REMARK 465 SER A 325 REMARK 465 ASP A 326 REMARK 465 THR A 327 REMARK 465 SER A 328 REMARK 465 SER A 329 REMARK 465 GLY A 330 REMARK 465 GLY A 331 REMARK 465 PRO A 332 REMARK 465 ALA A 333 REMARK 465 ARG A 334 REMARK 465 ALA A 335 REMARK 465 TYR A 336 REMARK 465 VAL A 468 REMARK 465 GLY A 469 REMARK 465 SER A 470 REMARK 465 MET A 471 REMARK 465 GLY A 472 REMARK 465 ALA A 473 REMARK 465 LEU A 474 REMARK 465 LEU A 475 REMARK 465 PHE A 476 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 26 CD1 REMARK 470 ILE A 37 CD1 REMARK 470 ILE A 41 CD1 REMARK 470 GLN A 47 CA C O CB CG CD OE1 REMARK 470 GLN A 47 NE2 REMARK 470 ILE A 68 CD1 REMARK 470 ILE A 81 CD1 REMARK 470 ILE A 84 CD1 REMARK 470 ILE A 90 CD1 REMARK 470 ILE A 99 CD1 REMARK 470 ILE A 100 CD1 REMARK 470 ILE A 122 CD1 REMARK 470 ILE A 123 CD1 REMARK 470 ILE A 125 CD1 REMARK 470 ILE A 129 CD1 REMARK 470 THR A 134 CA C O CB OG1 CG2 REMARK 470 ILE A 151 CD1 REMARK 470 ILE A 153 CD1 REMARK 470 ILE A 161 CD1 REMARK 470 ILE A 179 CD1 REMARK 470 ILE A 183 CD1 REMARK 470 ILE A 187 CD1 REMARK 470 ILE A 191 CD1 REMARK 470 ILE A 213 CD1 REMARK 470 ILE A 214 CD1 REMARK 470 ILE A 246 CD1 REMARK 470 ILE A 249 CD1 REMARK 470 ILE A 256 CD1 REMARK 470 ILE A 267 CD1 REMARK 470 ILE A 281 CD1 REMARK 470 ILE A 289 CD1 REMARK 470 ILE A 291 CD1 REMARK 470 ILE A 292 CD1 REMARK 470 ILE A 304 CD1 REMARK 470 SER A 313 CA C O CB OG REMARK 470 ILE A 365 CD1 REMARK 470 ILE A 380 CD1 REMARK 470 ILE A 417 CD1 REMARK 470 ILE A 428 CD1 REMARK 470 ILE A 441 CD1 REMARK 470 ILE A 447 CD1 REMARK 470 ILE A 453 CD1 REMARK 470 ILE A 454 CD1 REMARK 470 ILE A 460 CD1 REMARK 470 GLU A 467 CA C O CB CG CD OE1 REMARK 470 GLU A 467 OE2 REMARK 470 ILE B 81 CD1 REMARK 470 ILE B 89 CD1 REMARK 470 ILE G 19 CD1 REMARK 470 ILE G 36 CD1 REMARK 470 ILE G 42 CD1 REMARK 470 ILE G 46 CD1 REMARK 470 ILE G 50 CD1 REMARK 470 ILE G 57 CD1 REMARK 470 ILE G 59 CD1 REMARK 470 ILE G 61 CD1 REMARK 470 ILE G 64 CD1 REMARK 470 ILE G 65 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU A 356 H ASP A 357 1.21 REMARK 500 H ALA A 435 H ASP A 436 1.25 REMARK 500 H ARG A 236 H GLN A 237 1.30 REMARK 500 H SER A 383 H GLY A 384 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 63 CG TYR A 63 CD2 0.079 REMARK 500 ARG A 223 CZ ARG A 223 NH2 0.108 REMARK 500 ARG A 311 CZ ARG A 311 NH2 0.081 REMARK 500 PRO A 337 N PRO A 337 CA 0.118 REMARK 500 HIS A 360 CG HIS A 360 CD2 0.055 REMARK 500 SER A 432 CA SER A 432 CB 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 108 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PHE A 119 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 PHE A 119 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR A 131 CB - CG - CD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 TYR A 131 CB - CG - CD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 PHE A 196 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 PHE A 217 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 225 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 225 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PHE A 234 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE A 234 CB - CG - CD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 TYR A 235 CB - CG - CD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 236 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR A 257 CB - CG - CD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 TYR A 257 CG - CD1 - CE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 262 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 TYR A 272 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 272 CB - CG - CD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 273 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 285 CB - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TYR A 285 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A 302 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 PHE A 312 CB - CG - CD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 PHE A 312 CB - CG - CD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 TYR A 344 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR A 344 CB - CG - CD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 TYR A 364 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PHE A 367 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 CYS A 372 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 ALA A 373 N - CA - CB ANGL. DEV. = 8.7 DEGREES REMARK 500 PHE A 374 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PHE A 374 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 402 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 THR A 407 CA - CB - OG1 ANGL. DEV. = 14.1 DEGREES REMARK 500 TYR A 416 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE A 423 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 TYR A 455 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 455 CG - CD1 - CE1 ANGL. DEV. = -5.1 DEGREES REMARK 500 PHE A 461 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 PHE B 80 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 PHE B 80 CB - CG - CD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 PHE G 7 CB - CG - CD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 PHE G 14 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 VAL G 22 CA - CB - CG1 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG G 24 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG G 24 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 52 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 61 151.25 -40.86 REMARK 500 LEU A 69 -179.00 -69.39 REMARK 500 ALA A 70 -13.34 -156.84 REMARK 500 ARG A 73 110.58 71.50 REMARK 500 LEU A 76 -11.35 -153.64 REMARK 500 GLU A 78 54.92 34.29 REMARK 500 MET A 133 -92.51 -83.78 REMARK 500 LYS A 171 -31.36 -135.78 REMARK 500 PHE A 196 -74.15 -119.96 REMARK 500 THR A 200 -92.89 -93.42 REMARK 500 MET A 207 11.69 92.35 REMARK 500 ALA A 212 13.98 -154.39 REMARK 500 ILE A 213 11.14 -163.90 REMARK 500 LYS A 226 -141.46 -135.30 REMARK 500 ALA A 229 25.49 -147.91 REMARK 500 ARG A 231 -141.86 -88.06 REMARK 500 ARG A 236 -10.40 -161.90 REMARK 500 LEU A 239 87.63 -178.06 REMARK 500 ASN A 277 -152.18 -129.17 REMARK 500 SER A 287 -1.23 78.02 REMARK 500 ASN A 288 6.93 81.06 REMARK 500 PRO A 290 37.10 -85.99 REMARK 500 GLU A 349 -170.84 48.73 REMARK 500 LEU A 355 -145.97 62.96 REMARK 500 GLU A 356 -4.73 -159.49 REMARK 500 SER A 383 -16.59 -163.71 REMARK 500 SER A 386 -158.67 -159.40 REMARK 500 HIS A 404 -142.36 -145.41 REMARK 500 GLU A 406 -89.19 -25.29 REMARK 500 THR A 407 -34.69 -22.46 REMARK 500 ALA A 435 1.68 -167.84 REMARK 500 THR A 445 -68.26 -5.79 REMARK 500 LYS B 67 19.40 -142.12 REMARK 500 LYS B 92 67.53 66.36 REMARK 500 LYS G 27 132.17 63.23 REMARK 500 VAL G 66 -20.05 -159.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 40 0.08 SIDE CHAIN REMARK 500 TYR A 131 0.09 SIDE CHAIN REMARK 500 ARG A 228 0.09 SIDE CHAIN REMARK 500 ARG A 231 0.08 SIDE CHAIN REMARK 500 TYR A 235 0.09 SIDE CHAIN REMARK 500 ARG A 262 0.09 SIDE CHAIN REMARK 500 ARG A 273 0.15 SIDE CHAIN REMARK 500 TYR A 302 0.09 SIDE CHAIN REMARK 500 TYR A 344 0.14 SIDE CHAIN REMARK 500 TYR A 416 0.08 SIDE CHAIN REMARK 500 TYR A 457 0.06 SIDE CHAIN REMARK 500 PHE B 80 0.09 SIDE CHAIN REMARK 500 ARG B 95 0.08 SIDE CHAIN REMARK 500 ARG G 30 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3068 RELATED DB: EMDB DBREF 5A6U A 26 476 UNP P38377 S61A1_CANFA 26 476 DBREF 5A6U B 61 96 UNP P60467 SC61B_CANFA 61 96 DBREF 5A6U G 7 68 UNP P60058 SC61G_CANFA 7 68 SEQRES 1 A 451 ILE GLN PHE LYS GLU LYS VAL LEU TRP THR ALA ILE THR SEQRES 2 A 451 LEU PHE ILE PHE LEU VAL CYS CYS GLN ILE PRO LEU PHE SEQRES 3 A 451 GLY ILE MET SER SER ASP SER ALA ASP PRO PHE TYR TRP SEQRES 4 A 451 MET ARG VAL ILE LEU ALA SER ASN ARG GLY THR LEU MET SEQRES 5 A 451 GLU LEU GLY ILE SER PRO ILE VAL THR SER GLY LEU ILE SEQRES 6 A 451 MET GLN LEU LEU ALA GLY ALA LYS ILE ILE GLU VAL GLY SEQRES 7 A 451 ASP THR PRO LYS ASP ARG ALA LEU PHE ASN GLY ALA GLN SEQRES 8 A 451 LYS LEU PHE GLY MET ILE ILE THR ILE GLY GLN SER ILE SEQRES 9 A 451 VAL TYR VAL MET THR GLY MET TYR GLY ASP PRO SER GLU SEQRES 10 A 451 MET GLY ALA GLY ILE CYS LEU LEU ILE THR ILE GLN LEU SEQRES 11 A 451 PHE VAL ALA GLY LEU ILE VAL LEU LEU LEU ASP GLU LEU SEQRES 12 A 451 LEU GLN LYS GLY TYR GLY LEU GLY SER GLY ILE SER LEU SEQRES 13 A 451 PHE ILE ALA THR ASN ILE CYS GLU THR ILE VAL TRP LYS SEQRES 14 A 451 ALA PHE SER PRO THR THR VAL ASN THR GLY ARG GLY MET SEQRES 15 A 451 GLU PHE GLU GLY ALA ILE ILE ALA LEU PHE HIS LEU LEU SEQRES 16 A 451 ALA THR ARG THR ASP LYS VAL ARG ALA LEU ARG GLU ALA SEQRES 17 A 451 PHE TYR ARG GLN ASN LEU PRO ASN LEU MET ASN LEU ILE SEQRES 18 A 451 ALA THR ILE PHE VAL PHE ALA VAL VAL ILE TYR PHE GLN SEQRES 19 A 451 GLY PHE ARG VAL ASP LEU PRO ILE LYS SER ALA ARG TYR SEQRES 20 A 451 ARG GLY GLN TYR ASN THR TYR PRO ILE LYS LEU PHE TYR SEQRES 21 A 451 THR SER ASN ILE PRO ILE ILE LEU GLN SER ALA LEU VAL SEQRES 22 A 451 SER ASN LEU TYR VAL ILE SER GLN MET LEU SER ALA ARG SEQRES 23 A 451 PHE SER GLY ASN LEU LEU VAL SER LEU LEU GLY THR TRP SEQRES 24 A 451 SER ASP THR SER SER GLY GLY PRO ALA ARG ALA TYR PRO SEQRES 25 A 451 VAL GLY GLY LEU CYS HIS TYR LEU SER PRO PRO GLU SER SEQRES 26 A 451 PHE GLY SER VAL LEU GLU ASP PRO VAL HIS ALA VAL VAL SEQRES 27 A 451 TYR ILE VAL PHE MET LEU GLY SER CYS ALA PHE PHE SER SEQRES 28 A 451 LYS THR TRP ILE GLU VAL SER GLY SER SER ALA LYS ASP SEQRES 29 A 451 VAL ALA LYS GLN LEU LYS GLU GLN GLN MET VAL MET ARG SEQRES 30 A 451 GLY HIS ARG GLU THR SER MET VAL HIS GLU LEU ASN ARG SEQRES 31 A 451 TYR ILE PRO THR ALA ALA ALA PHE GLY GLY LEU CYS ILE SEQRES 32 A 451 GLY ALA LEU SER VAL LEU ALA ASP PHE LEU GLY ALA ILE SEQRES 33 A 451 GLY SER GLY THR GLY ILE LEU LEU ALA VAL THR ILE ILE SEQRES 34 A 451 TYR GLN TYR PHE GLU ILE PHE VAL LYS GLU GLN SER GLU SEQRES 35 A 451 VAL GLY SER MET GLY ALA LEU LEU PHE SEQRES 1 B 36 GLU ASP SER PRO GLY LEU LYS VAL GLY PRO VAL PRO VAL SEQRES 2 B 36 LEU VAL MET SER LEU LEU PHE ILE ALA SER VAL PHE MET SEQRES 3 B 36 LEU HIS ILE TRP GLY LYS TYR THR ARG SER SEQRES 1 G 62 PHE VAL GLU PRO SER ARG GLN PHE VAL LYS ASP SER ILE SEQRES 2 G 62 ARG LEU VAL LYS ARG CYS THR LYS PRO ASP ARG LYS GLU SEQRES 3 G 62 PHE GLN LYS ILE ALA MET ALA THR ALA ILE GLY PHE ALA SEQRES 4 G 62 ILE MET GLY PHE ILE GLY PHE PHE VAL LYS LEU ILE HIS SEQRES 5 G 62 ILE PRO ILE ASN ASN ILE ILE VAL GLY GLY HELIX 1 AA1 GLN A 27 CYS A 46 1 20 HELIX 2 AA2 TYR A 63 LEU A 69 1 7 HELIX 3 AA3 ILE A 81 ALA A 97 1 17 HELIX 4 AA4 THR A 105 MET A 133 1 29 HELIX 5 AA5 LEU A 149 ASP A 166 1 18 HELIX 6 AA6 SER A 177 TRP A 193 1 17 HELIX 7 AA7 ALA A 215 ARG A 223 1 9 HELIX 8 AA8 THR A 224 LYS A 226 5 3 HELIX 9 AA9 PRO A 240 GLY A 260 1 21 HELIX 10 AB1 TYR A 285 SER A 287 5 3 HELIX 11 AB2 ASN A 288 ILE A 304 1 17 HELIX 12 AB3 ILE A 304 PHE A 312 1 9 HELIX 13 AB4 VAL A 338 TYR A 344 1 7 HELIX 14 AB5 VAL A 359 SER A 383 1 25 HELIX 15 AB6 SER A 386 GLN A 397 1 12 HELIX 16 AB7 GLU A 406 VAL A 433 1 28 HELIX 17 AB8 GLY A 444 SER A 466 1 23 HELIX 18 AB9 GLY B 69 MET B 86 1 18 HELIX 19 AC1 GLU G 9 ARG G 20 1 12 HELIX 20 AC2 ASP G 29 MET G 47 1 19 HELIX 21 AC3 PHE G 49 VAL G 54 1 6 HELIX 22 AC4 VAL G 54 ASN G 63 1 10 SHEET 1 AA1 2 VAL A 263 LYS A 268 0 SHEET 2 AA1 2 TYR A 276 ILE A 281 -1 O ILE A 281 N VAL A 263 CISPEP 1 LEU A 175 GLY A 176 0 6.84 CISPEP 2 SER A 443 GLY A 444 0 29.23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000