HEADER ANTIVIRAL PROTEIN 01-JUL-15 5A6W TITLE COMPLEX OF RICE BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PROTEIN AVR-PIKD TITLE 2 WITH THE HMA DOMAIN OF PIKP1 FROM RICE (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESISTANCE PROTEIN PIKP-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PIKP-HMA, UNP RESIDUES 186-258; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AVR-PIK PROTEIN; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: AVR-PIKD, UNP RESIDUES 22-113; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 STRAIN: K60; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: SHUFFLE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: POPINS3C; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MAGNAPORTHE ORYZAE; SOURCE 14 ORGANISM_TAXID: 318829; SOURCE 15 STRAIN: SASA2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 19 EXPRESSION_SYSTEM_VARIANT: SHUFFLE; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: POPINA KEYWDS ANTIVIRAL PROTEIN, RICE BLAST DISEASE, PLANT DISEASE RESISTANCE, KEYWDS 2 EFFECTOR PROTEIN, INTEGRATED HMA DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MAQBOOL,H.SAITOH,M.FRANCESCHETTI,C.E.STEVENSON,A.UEMURA,H.KANZAKI, AUTHOR 2 S.KAMOUN,R.TERAUCHI,M.J.BANFIELD REVDAT 4 10-JAN-24 5A6W 1 REMARK REVDAT 3 22-MAR-17 5A6W 1 JRNL REVDAT 2 09-SEP-15 5A6W 1 JRNL REVDAT 1 26-AUG-15 5A6W 0 JRNL AUTH A.MAQBOOL,H.SAITOH,M.FRANCESCHETTI,C.E.STEVENSON,A.UEMURA, JRNL AUTH 2 H.KANZAKI,S.KAMOUN,R.TERAUCHI,M.J.BANFIELD JRNL TITL STRUCTURAL BASIS OF PATHOGEN RECOGNITION BY AN INTEGRATED JRNL TITL 2 HMA DOMAIN IN A PLANT NLR IMMUNE RECEPTOR. JRNL REF ELIFE V. 4 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26304198 JRNL DOI 10.7554/ELIFE.08709 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2379 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1809 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1834 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2433 ; 1.567 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4228 ; 0.729 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 5.834 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;30.929 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;12.497 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.629 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1991 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 373 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 914 ; 1.634 ; 2.106 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 913 ; 1.618 ; 2.103 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1137 ; 2.631 ; 3.134 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 895 ; 2.250 ; 2.404 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5550 0.9932 -9.9001 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0964 REMARK 3 T33: 0.1320 T12: -0.0487 REMARK 3 T13: 0.0215 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 4.1536 L22: 1.8979 REMARK 3 L33: 1.7210 L12: 0.7948 REMARK 3 L13: -1.0099 L23: -0.8565 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: 0.2885 S13: -0.3096 REMARK 3 S21: 0.0180 S22: -0.0490 S23: -0.3795 REMARK 3 S31: 0.0303 S32: -0.0957 S33: 0.0350 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 184 B 258 REMARK 3 ORIGIN FOR THE GROUP (A): -31.6302 -6.8926 -0.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.0117 T22: 0.0630 REMARK 3 T33: 0.0799 T12: 0.0047 REMARK 3 T13: -0.0119 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.3168 L22: 1.6735 REMARK 3 L33: 1.7269 L12: 0.2792 REMARK 3 L13: -0.1994 L23: 0.5847 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.0722 S13: -0.2687 REMARK 3 S21: 0.0976 S22: 0.1146 S23: -0.2395 REMARK 3 S31: 0.0738 S32: 0.1242 S33: -0.1054 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 31 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): -43.0395 6.9348 4.9588 REMARK 3 T TENSOR REMARK 3 T11: 0.0462 T22: 0.0284 REMARK 3 T33: 0.0043 T12: 0.0008 REMARK 3 T13: -0.0109 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.0552 L22: 0.5418 REMARK 3 L33: 1.3285 L12: 0.0192 REMARK 3 L13: -0.1015 L23: 0.3920 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: 0.0079 S13: 0.0321 REMARK 3 S21: -0.0227 S22: -0.0130 S23: 0.0200 REMARK 3 S31: -0.0710 S32: 0.0008 S33: 0.0435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5A6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 5A6P REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 0.1M CHES PH 9 REMARK 280 AND 20% PEG335 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.90500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 8.95250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.85750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.20500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 8.95250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.20500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.20500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.85750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 17.90500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 184 REMARK 465 PRO A 185 REMARK 465 GLY A 186 REMARK 465 GLY A 199 REMARK 465 GLY B 199 REMARK 465 ASN B 200 REMARK 465 MET C 21 REMARK 465 GLU C 22 REMARK 465 THR C 23 REMARK 465 GLY C 24 REMARK 465 ASN C 25 REMARK 465 LYS C 26 REMARK 465 TYR C 27 REMARK 465 ILE C 28 REMARK 465 GLU C 29 REMARK 465 LYS C 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 190 O HOH B 2008 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2007 O HOH C 2056 4444 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 184 N - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP C 40 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 197 44.63 -103.86 REMARK 500 VAL A 249 -58.79 -122.44 REMARK 500 VAL B 249 -58.77 -125.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1259 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A6P RELATED DB: PDB REMARK 900 HEAVY METAL ASSOCIATED DOMAIN OF NLR-TYPE IMMUNE RECEPTOR PIKP1 REMARK 900 FROM RICE (ORYZA SATIVA) DBREF 5A6W A 186 258 UNP E9KPB5 E9KPB5_ORYSJ 186 258 DBREF 5A6W B 186 258 UNP E9KPB5 E9KPB5_ORYSJ 186 258 DBREF 5A6W C 22 113 UNP C4B8B8 C4B8B8_MAGOR 22 113 SEQADV 5A6W GLY A 184 UNP E9KPB5 EXPRESSION TAG SEQADV 5A6W PRO A 185 UNP E9KPB5 EXPRESSION TAG SEQADV 5A6W GLY B 184 UNP E9KPB5 EXPRESSION TAG SEQADV 5A6W PRO B 185 UNP E9KPB5 EXPRESSION TAG SEQADV 5A6W MET C 21 UNP C4B8B8 EXPRESSION TAG SEQRES 1 A 75 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 A 75 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 A 75 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 A 75 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 A 75 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 A 75 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER SEQRES 1 B 75 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 B 75 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 B 75 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 B 75 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 B 75 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 B 75 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER SEQRES 1 C 93 MET GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE SEQRES 2 C 93 ASP LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP HIS SEQRES 3 C 93 PRO GLY ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE SEQRES 4 C 93 LYS ASN ASN VAL ARG GLN ASP ALA GLY THR CYS TYR SER SEQRES 5 C 93 SER TRP LYS MET ASP MET LYS VAL GLY PRO ASN TRP VAL SEQRES 6 C 93 HIS ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP SEQRES 7 C 93 PHE PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO SEQRES 8 C 93 GLY PHE HET EDO B1259 4 HET SO4 C1114 5 HET EDO C1115 4 HET EDO C1116 4 HET EDO C1117 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 4(C2 H6 O2) FORMUL 5 SO4 O4 S 2- FORMUL 9 HOH *138(H2 O) HELIX 1 1 ASN A 200 SER A 212 1 13 HELIX 2 2 ASP A 237 VAL A 249 1 13 HELIX 3 3 ASN B 201 SER B 212 1 12 HELIX 4 4 ASP B 237 VAL B 249 1 13 SHEET 1 AA11 ALA A 252 SER A 258 0 SHEET 2 AA11 GLN A 189 VAL A 195 -1 O LYS A 190 N SER A 258 SHEET 3 AA11 LYS A 228 GLY A 233 -1 O ILE A 229 N ILE A 193 SHEET 4 AA11 VAL A 216 VAL A 222 -1 N ASP A 217 O VAL A 232 SHEET 5 AA11 VAL B 216 VAL B 222 -1 O ASP B 217 N LEU A 221 SHEET 6 AA11 LYS B 228 GLY B 233 -1 O LYS B 228 N VAL B 222 SHEET 7 AA11 GLN B 189 VAL B 195 -1 O GLN B 189 N GLY B 233 SHEET 8 AA11 ALA B 252 SER B 258 -1 O GLU B 253 N LYS B 194 SHEET 9 AA11 TRP C 74 VAL C 80 -1 O ASP C 77 N VAL B 257 SHEET 10 AA11 ASN C 83 SER C 89 -1 O ASN C 83 N VAL C 80 SHEET 11 AA11 LEU C 95 SER C 96 -1 O SER C 96 N LYS C 88 SHEET 1 CA 3 VAL C 63 CYS C 70 0 SHEET 2 CA 3 CYS C 54 LYS C 60 -1 O CYS C 54 N CYS C 70 SHEET 3 CA 3 TRP C 103 LYS C 109 -1 O ILE C 104 N PHE C 59 SSBOND 1 CYS C 54 CYS C 93 1555 1555 2.08 SITE 1 AC1 4 SER C 73 ASP C 90 ASP C 91 HOH C2075 SITE 1 AC2 6 LEU B 254 LEU C 35 TRP C 84 HOH C2007 SITE 2 AC2 6 HOH C2043 HOH C2066 SITE 1 AC3 4 ASN C 62 ASN C 83 TRP C 84 HOH C2030 SITE 1 AC4 5 VAL B 257 HOH B2039 ASP C 77 HIS C 86 SITE 2 AC4 5 HOH C2042 SITE 1 AC5 7 VAL B 192 LYS B 228 LEU B 255 GLN B 256 SITE 2 AC5 7 HOH B2024 HOH B2040 TRP C 56 CRYST1 118.410 118.410 35.810 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027925 0.00000