HEADER SUGAR BINDING PROTEIN 02-JUL-15 5A6X TITLE STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN PA14 TITLE 2 IN COMPLEX WITH ALPHA-METHYL-FUCOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PA-IIL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 2-115; COMPND 5 SYNONYM: LECB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRS01.4 KEYWDS SUGAR BINDING PROTEIN, LECTIN, LECB, PSEUDOMONAS AERUGINOSA PA14 EXPDTA X-RAY DIFFRACTION AUTHOR R.SOMMER,S.WAGNER,A.VARROT,A.KHALEDI,S.HAUSSLER,A.IMBERTY,A.TITZ REVDAT 5 10-JAN-24 5A6X 1 HETSYN REVDAT 4 29-JUL-20 5A6X 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 22-JAN-20 5A6X 1 AUTHOR REVDAT 2 12-SEP-18 5A6X 1 JRNL REVDAT 1 25-MAY-16 5A6X 0 JRNL AUTH R.SOMMER,S.WAGNER,A.VARROT,C.M.NYCHOLAT,A.KHALEDI, JRNL AUTH 2 S.HAUSSLER,J.C.PAULSON,A.IMBERTY,A.TITZ JRNL TITL THE VIRULENCE FACTOR LECB VARIES IN CLINICAL ISOLATES: JRNL TITL 2 CONSEQUENCES FOR LIGAND BINDING AND DRUG DISCOVERY. JRNL REF CHEM SCI V. 7 4990 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 30155149 JRNL DOI 10.1039/C6SC00696E REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2763 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3786 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 759 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.199 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3398 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3174 ; 0.012 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4660 ; 1.641 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7242 ; 2.004 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 6.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;46.241 ;27.838 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ; 9.598 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 4.461 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4094 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 772 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1840 ; 0.694 ; 0.707 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1839 ; 0.694 ; 0.707 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2300 ; 1.100 ; 1.061 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1558 ; 1.252 ; 0.818 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5A6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92053 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 37.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5A6Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 8K 1M LICL 0.1M CITRIC ACID PH REMARK 280 3.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.27900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.51800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.79250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.51800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.27900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.79250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 72 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER D 52 CB SER D 52 OG 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -40.68 -149.60 REMARK 500 SER A 97 -135.66 -149.85 REMARK 500 GLU B 86 -31.04 -152.39 REMARK 500 SER B 97 -142.40 -142.32 REMARK 500 ASN C 46 39.89 -141.25 REMARK 500 GLU C 86 -38.07 -149.22 REMARK 500 SER C 97 -146.55 -142.13 REMARK 500 GLU D 86 -39.02 -142.63 REMARK 500 SER D 97 -140.27 -147.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2009 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A2110 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2076 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH C2014 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH C2042 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH C2043 DISTANCE = 6.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 145.1 REMARK 620 3 ASP A 101 OD2 153.6 45.1 REMARK 620 4 ASN A 103 OD1 87.3 70.4 74.9 REMARK 620 5 ASP A 104 OD1 83.2 68.9 114.0 85.3 REMARK 620 6 MFU A 201 O3 131.6 62.9 73.8 133.3 76.8 REMARK 620 7 MFU A 201 O4 77.3 128.1 115.3 161.4 103.0 65.3 REMARK 620 8 GLY B 114 O 79.6 124.1 80.2 87.6 161.7 119.7 79.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 199 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.2 REMARK 620 3 ASP A 99 OD1 87.0 80.8 REMARK 620 4 ASP A 101 OD1 77.5 129.3 86.1 REMARK 620 5 ASP A 104 OD1 117.4 130.6 147.4 79.1 REMARK 620 6 ASP A 104 OD2 83.2 79.6 160.3 108.2 51.5 REMARK 620 7 MFU A 201 O2 141.7 89.6 96.4 140.8 78.0 81.1 REMARK 620 8 MFU A 201 O3 149.6 144.9 76.8 76.0 71.5 119.2 66.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 78.7 REMARK 620 3 ASP B 101 OD2 80.7 153.4 REMARK 620 4 ASP B 101 OD1 124.1 145.0 44.9 REMARK 620 5 ASN B 103 OD1 86.3 86.3 75.8 71.0 REMARK 620 6 ASP B 104 OD1 159.6 82.4 114.6 69.7 84.8 REMARK 620 7 MFU B 201 O4 79.7 79.2 113.3 127.1 161.5 104.4 REMARK 620 8 MFU B 201 O3 121.4 131.9 73.7 62.8 133.7 77.4 64.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 199 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 53.5 REMARK 620 3 ASP B 99 OD1 87.6 78.9 REMARK 620 4 ASP B 101 OD1 77.2 129.6 90.4 REMARK 620 5 ASP B 104 OD1 116.8 130.1 149.3 78.3 REMARK 620 6 ASP B 104 OD2 85.1 80.0 157.9 108.2 50.3 REMARK 620 7 MFU B 201 O3 148.4 145.1 77.0 75.5 72.6 118.5 REMARK 620 8 MFU B 201 O2 142.4 89.9 94.0 140.3 78.0 79.5 67.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 21 O REMARK 620 2 ASP C 101 OD1 144.7 REMARK 620 3 ASP C 101 OD2 154.2 46.8 REMARK 620 4 ASN C 103 OD1 87.6 71.3 75.8 REMARK 620 5 ASP C 104 OD1 82.5 68.5 115.3 86.2 REMARK 620 6 MFU C 201 O4 77.3 127.5 113.8 161.0 102.9 REMARK 620 7 MFU C 201 O3 129.3 64.0 75.2 135.3 76.5 63.6 REMARK 620 8 GLY D 114 O 80.3 124.5 79.0 86.4 161.5 79.9 120.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 199 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE2 REMARK 620 2 GLU C 95 OE1 53.9 REMARK 620 3 ASP C 99 OD1 78.7 87.3 REMARK 620 4 ASP C 101 OD1 129.7 76.9 90.0 REMARK 620 5 ASP C 104 OD2 80.2 85.3 158.1 108.3 REMARK 620 6 ASP C 104 OD1 130.8 117.2 148.7 78.1 50.8 REMARK 620 7 MFU C 201 O2 91.2 143.9 95.0 138.9 79.3 76.7 REMARK 620 8 MFU C 201 O3 144.3 148.9 77.2 76.3 118.1 72.0 65.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 114 O REMARK 620 2 ASN D 21 O 78.8 REMARK 620 3 ASP D 101 OD1 124.7 144.8 REMARK 620 4 ASP D 101 OD2 80.0 152.7 45.9 REMARK 620 5 ASN D 103 OD1 86.7 86.2 71.2 75.5 REMARK 620 6 ASP D 104 OD1 160.4 82.5 69.7 115.6 86.1 REMARK 620 7 MFU D 201 O4 78.5 77.7 128.6 114.6 159.9 103.4 REMARK 620 8 MFU D 201 O3 119.7 132.2 63.2 73.9 134.4 77.7 65.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 199 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE2 REMARK 620 2 GLU D 95 OE1 53.9 REMARK 620 3 ASP D 99 OD1 80.7 87.1 REMARK 620 4 ASP D 101 OD1 129.9 77.3 87.2 REMARK 620 5 ASP D 104 OD2 79.6 83.8 160.1 108.0 REMARK 620 6 ASP D 104 OD1 130.4 116.6 147.8 78.1 51.1 REMARK 620 7 MFU D 201 O3 145.4 147.8 76.3 74.6 119.6 72.3 REMARK 620 8 MFU D 201 O2 89.1 141.8 96.9 140.7 79.7 78.0 68.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A6Q RELATED DB: PDB REMARK 900 NATIVE STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA REMARK 900 STRAIN PA14 REMARK 900 RELATED ID: 5A6Y RELATED DB: PDB REMARK 900 STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN REMARK 900 PA14 IN COMPLEX WITH MANNOSE-ALPHA1,3MANNOSIDE REMARK 900 RELATED ID: 5A6Z RELATED DB: PDB REMARK 900 STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN REMARK 900 PA14 IN COMPLEX WITH LEWIS A REMARK 900 RELATED ID: 5A70 RELATED DB: PDB REMARK 900 STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN REMARK 900 PA14 IN COMPLEX WITH LEWIS X TETRASACCHARIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 N TERMINAL METHIONINE CLEAVED OFF IN THE MATURE PROTEIN SO REMARK 999 NUMBERING SHIFTED BY ONE DBREF 5A6X A 1 114 UNP U8MRX2 U8MRX2_PSEAI 2 115 DBREF 5A6X B 1 114 UNP U8MRX2 U8MRX2_PSEAI 2 115 DBREF 5A6X C 1 114 UNP U8MRX2 U8MRX2_PSEAI 2 115 DBREF 5A6X D 1 114 UNP U8MRX2 U8MRX2_PSEAI 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 A 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 A 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 A 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 B 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 B 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 B 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 C 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 C 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 C 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 D 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 D 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 D 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET CA A 199 1 HET CA A 200 1 HET MFU A 201 12 HET CA B 199 1 HET CA B 200 1 HET MFU B 201 12 HET CA C 199 1 HET CA C 200 1 HET MFU C 201 12 HET CA D 199 1 HET CA D 200 1 HET MFU D 201 12 HETNAM CA CALCIUM ION HETNAM MFU METHYL ALPHA-L-FUCOPYRANOSIDE HETSYN MFU ALPHA-L-METHYL-FUCOSE; METHYL 6-DEOXY-ALPHA-L- HETSYN 2 MFU GALACTOPYRANOSIDE; METHYL ALPHA-L-FUCOSIDE; METHYL L- HETSYN 3 MFU FUCOSIDE; METHYL FUCOSIDE FORMUL 5 CA 8(CA 2+) FORMUL 7 MFU 4(C7 H14 O5) FORMUL 17 HOH *759(H2 O) SHEET 1 AA 4 VAL A 5 THR A 7 0 SHEET 2 AA 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA 4 GLN A 26 VAL A 32 -1 O THR A 27 N SER A 68 SHEET 4 AA 4 GLU A 35 GLY A 42 -1 O ALA A 38 N VAL A 30 SHEET 1 AB 5 ILE A 50 ASN A 56 0 SHEET 2 AB 5 GLN A 13 ALA A 20 -1 O VAL A 16 N LYS A 53 SHEET 3 AB 5 ASP A 104 TRP A 111 -1 O VAL A 108 N THR A 17 SHEET 4 AB 5 GLU A 86 SER A 94 -1 O VAL A 92 N VAL A 107 SHEET 5 AB 5 ASP A 75 LEU A 83 -1 O ALA A 79 N LEU A 91 SHEET 1 BA 4 VAL B 5 THR B 7 0 SHEET 2 BA 4 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 BA 4 GLN B 26 VAL B 32 -1 O THR B 27 N SER B 68 SHEET 4 BA 4 GLU B 35 GLY B 42 -1 O ALA B 38 N VAL B 30 SHEET 1 BB 5 ILE B 50 ASN B 56 0 SHEET 2 BB 5 GLN B 13 ALA B 20 -1 O VAL B 16 N LYS B 53 SHEET 3 BB 5 ASP B 104 TRP B 111 -1 O VAL B 108 N THR B 17 SHEET 4 BB 5 GLU B 86 SER B 94 -1 O VAL B 92 N VAL B 107 SHEET 5 BB 5 ASP B 75 LEU B 83 -1 O ALA B 79 N LEU B 91 SHEET 1 CA 4 VAL C 5 THR C 7 0 SHEET 2 CA 4 LYS C 62 VAL C 69 -1 O VAL C 63 N PHE C 6 SHEET 3 CA 4 GLN C 26 VAL C 32 -1 O THR C 27 N SER C 68 SHEET 4 CA 4 GLU C 35 GLY C 42 -1 O ALA C 38 N VAL C 30 SHEET 1 CB 5 ILE C 50 ASN C 56 0 SHEET 2 CB 5 GLN C 13 ALA C 20 -1 O VAL C 16 N LYS C 53 SHEET 3 CB 5 ASP C 104 TRP C 111 -1 O VAL C 108 N THR C 17 SHEET 4 CB 5 GLU C 86 SER C 94 -1 O VAL C 92 N VAL C 107 SHEET 5 CB 5 ASP C 75 LEU C 83 -1 O ALA C 79 N LEU C 91 SHEET 1 DA 4 VAL D 5 THR D 7 0 SHEET 2 DA 4 LYS D 62 VAL D 69 -1 O VAL D 63 N PHE D 6 SHEET 3 DA 4 GLN D 26 VAL D 32 -1 O THR D 27 N SER D 68 SHEET 4 DA 4 GLU D 35 GLY D 42 -1 O ALA D 38 N VAL D 30 SHEET 1 DB 5 ILE D 50 ASN D 56 0 SHEET 2 DB 5 GLN D 13 ALA D 20 -1 O VAL D 16 N LYS D 53 SHEET 3 DB 5 ASP D 104 TRP D 111 -1 O VAL D 108 N THR D 17 SHEET 4 DB 5 GLU D 86 SER D 94 -1 O VAL D 92 N VAL D 107 SHEET 5 DB 5 ASP D 75 LEU D 83 -1 O ALA D 79 N LEU D 91 LINK O ASN A 21 CA CA A 200 1555 1555 2.35 LINK OE1 GLU A 95 CA CA A 199 1555 1555 2.52 LINK OE2 GLU A 95 CA CA A 199 1555 1555 2.45 LINK OD1 ASP A 99 CA CA A 199 1555 1555 2.39 LINK OD1 ASP A 101 CA CA A 199 1555 1555 2.34 LINK OD1 ASP A 101 CA CA A 200 1555 1555 3.13 LINK OD2 ASP A 101 CA CA A 200 1555 1555 2.44 LINK OD1 ASN A 103 CA CA A 200 1555 1555 2.35 LINK OD1 ASP A 104 CA CA A 199 1555 1555 2.63 LINK OD2 ASP A 104 CA CA A 199 1555 1555 2.41 LINK OD1 ASP A 104 CA CA A 200 1555 1555 2.37 LINK O GLY A 114 CA CA B 200 1555 1555 2.42 LINK CA CA A 199 O2 MFU A 201 1555 1555 2.48 LINK CA CA A 199 O3 MFU A 201 1555 1555 2.48 LINK CA CA A 200 O3 MFU A 201 1555 1555 2.44 LINK CA CA A 200 O4 MFU A 201 1555 1555 2.48 LINK CA CA A 200 O GLY B 114 1555 1555 2.37 LINK O ASN B 21 CA CA B 200 1555 1555 2.36 LINK OE1 GLU B 95 CA CA B 199 1555 1555 2.50 LINK OE2 GLU B 95 CA CA B 199 1555 1555 2.40 LINK OD1 ASP B 99 CA CA B 199 1555 1555 2.39 LINK OD1 ASP B 101 CA CA B 199 1555 1555 2.36 LINK OD2 ASP B 101 CA CA B 200 1555 1555 2.42 LINK OD1 ASP B 101 CA CA B 200 1555 1555 3.10 LINK OD1 ASN B 103 CA CA B 200 1555 1555 2.37 LINK OD1 ASP B 104 CA CA B 199 1555 1555 2.67 LINK OD2 ASP B 104 CA CA B 199 1555 1555 2.43 LINK OD1 ASP B 104 CA CA B 200 1555 1555 2.38 LINK CA CA B 199 O3 MFU B 201 1555 1555 2.48 LINK CA CA B 199 O2 MFU B 201 1555 1555 2.46 LINK CA CA B 200 O4 MFU B 201 1555 1555 2.50 LINK CA CA B 200 O3 MFU B 201 1555 1555 2.50 LINK O ASN C 21 CA CA C 200 1555 1555 2.37 LINK OE2 GLU C 95 CA CA C 199 1555 1555 2.42 LINK OE1 GLU C 95 CA CA C 199 1555 1555 2.48 LINK OD1 ASP C 99 CA CA C 199 1555 1555 2.38 LINK OD1 ASP C 101 CA CA C 199 1555 1555 2.32 LINK OD1 ASP C 101 CA CA C 200 1555 1555 3.07 LINK OD2 ASP C 101 CA CA C 200 1555 1555 2.43 LINK OD1 ASN C 103 CA CA C 200 1555 1555 2.32 LINK OD2 ASP C 104 CA CA C 199 1555 1555 2.41 LINK OD1 ASP C 104 CA CA C 199 1555 1555 2.63 LINK OD1 ASP C 104 CA CA C 200 1555 1555 2.40 LINK O GLY C 114 CA CA D 200 1555 1555 2.43 LINK CA CA C 199 O2 MFU C 201 1555 1555 2.47 LINK CA CA C 199 O3 MFU C 201 1555 1555 2.51 LINK CA CA C 200 O4 MFU C 201 1555 1555 2.52 LINK CA CA C 200 O3 MFU C 201 1555 1555 2.48 LINK CA CA C 200 O GLY D 114 1555 1555 2.42 LINK O ASN D 21 CA CA D 200 1555 1555 2.38 LINK OE2 GLU D 95 CA CA D 199 1555 1555 2.42 LINK OE1 GLU D 95 CA CA D 199 1555 1555 2.50 LINK OD1 ASP D 99 CA CA D 199 1555 1555 2.38 LINK OD1 ASP D 101 CA CA D 199 1555 1555 2.36 LINK OD1 ASP D 101 CA CA D 200 1555 1555 3.06 LINK OD2 ASP D 101 CA CA D 200 1555 1555 2.43 LINK OD1 ASN D 103 CA CA D 200 1555 1555 2.34 LINK OD2 ASP D 104 CA CA D 199 1555 1555 2.41 LINK OD1 ASP D 104 CA CA D 199 1555 1555 2.64 LINK OD1 ASP D 104 CA CA D 200 1555 1555 2.38 LINK CA CA D 199 O3 MFU D 201 1555 1555 2.46 LINK CA CA D 199 O2 MFU D 201 1555 1555 2.44 LINK CA CA D 200 O4 MFU D 201 1555 1555 2.51 LINK CA CA D 200 O3 MFU D 201 1555 1555 2.42 CISPEP 1 TRP A 111 PRO A 112 0 -5.16 CISPEP 2 TRP B 111 PRO B 112 0 -7.29 CISPEP 3 TRP C 111 PRO C 112 0 -5.90 CISPEP 4 TRP D 111 PRO D 112 0 -2.06 CRYST1 52.558 65.585 109.036 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009171 0.00000 MTRIX1 1 -0.993000 0.012000 0.116000 27.23000 1 MTRIX2 1 -0.006000 -0.999000 0.046000 -0.29400 1 MTRIX3 1 0.117000 0.045000 0.992000 -1.75000 1 MTRIX1 2 0.890000 0.442000 -0.110000 0.52500 1 MTRIX2 2 0.438000 -0.897000 -0.057000 -7.04800 1 MTRIX3 2 -0.124000 0.002000 -0.992000 -14.13400 1 MTRIX1 3 -0.893000 -0.449000 0.012000 24.91800 1 MTRIX2 3 -0.449000 0.892000 -0.041000 5.39100 1 MTRIX3 3 0.008000 -0.042000 -0.999000 -16.04900 1