HEADER SUGAR BINDING PROTEIN 02-JUL-15 5A6Z TITLE STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN PA14 TITLE 2 IN COMPLEX WITH LEWIS A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 2-115; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRS01.4 KEYWDS SUGAR BINDING PROTEIN, LECTIN, LECB, LEWIS ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR R.SOMMER,S.WAGNER,A.VARROT,A.KHALEDI,S.HAUSSLER,A.IMBERTY,A.TITZ REVDAT 5 10-JAN-24 5A6Z 1 HETSYN LINK REVDAT 4 29-JUL-20 5A6Z 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 22-JAN-20 5A6Z 1 AUTHOR LINK REVDAT 2 12-SEP-18 5A6Z 1 JRNL REVDAT 1 25-MAY-16 5A6Z 0 JRNL AUTH R.SOMMER,S.WAGNER,A.VARROT,C.M.NYCHOLAT,A.KHALEDI, JRNL AUTH 2 S.HAUSSLER,J.C.PAULSON,A.IMBERTY,A.TITZ JRNL TITL THE VIRULENCE FACTOR LECB VARIES IN CLINICAL ISOLATES: JRNL TITL 2 CONSEQUENCES FOR LIGAND BINDING AND DRUG DISCOVERY. JRNL REF CHEM SCI V. 7 4990 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 30155149 JRNL DOI 10.1039/C6SC00696E REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 62929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3384 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.1850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3281 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 205 REMARK 3 SOLVENT ATOMS : 863 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3638 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3350 ; 0.012 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5016 ; 1.714 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7701 ; 1.674 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 6.789 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;48.205 ;27.838 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;10.855 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 3.288 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 665 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4247 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 795 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1887 ; 0.748 ; 0.883 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1886 ; 0.748 ; 0.883 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2375 ; 1.109 ; 1.326 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1751 ; 1.450 ; 1.096 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. LOCAL NCS REMARK 4 REMARK 4 5A6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98021 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66333 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 27.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5A6Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8K 0.2M AMSO4 0.1M TRIS PH REMARK 280 8.5. PEG CONCENTRATION WAS INCREASED TO 30% FOR CRYOPROTECTION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.88600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 72 CD NE CZ NH1 NH2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -40.15 -147.61 REMARK 500 SER A 97 -141.93 -156.44 REMARK 500 ASN B 46 37.25 -142.28 REMARK 500 GLU B 86 -38.18 -150.08 REMARK 500 SER B 97 -143.23 -155.54 REMARK 500 ASN C 46 38.28 -141.15 REMARK 500 GLU C 86 -32.96 -152.28 REMARK 500 SER C 97 -147.64 -153.86 REMARK 500 GLU D 86 -34.99 -149.84 REMARK 500 SER D 97 -145.15 -154.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2058 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B2008 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B2062 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH C2006 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH C2053 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH D2047 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH D2051 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH D2054 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH D2072 DISTANCE = 6.28 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLA E 1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 143.7 REMARK 620 3 ASP A 101 OD2 154.2 45.1 REMARK 620 4 ASN A 103 OD1 86.0 70.9 75.8 REMARK 620 5 ASP A 104 OD1 82.4 69.1 114.1 86.9 REMARK 620 6 GLY B 114 O 79.0 125.8 82.1 87.6 160.9 REMARK 620 7 FUC E 4 O4 77.7 129.1 115.0 159.7 102.7 77.5 REMARK 620 8 FUC E 4 O3 132.2 62.8 72.9 133.7 76.0 120.2 66.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 199 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.0 REMARK 620 3 ASP A 99 OD1 86.7 81.8 REMARK 620 4 ASP A 101 OD1 77.1 129.4 88.6 REMARK 620 5 ASP A 104 OD1 117.1 128.6 148.4 77.9 REMARK 620 6 ASP A 104 OD2 82.0 77.9 159.7 105.1 51.3 REMARK 620 7 FUC E 4 O2 142.6 90.3 95.6 140.2 78.1 83.6 REMARK 620 8 FUC E 4 O3 148.7 146.5 77.0 76.0 72.1 120.5 66.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 80.0 REMARK 620 3 ASP B 101 OD2 79.9 153.7 REMARK 620 4 ASP B 101 OD1 124.5 144.5 45.8 REMARK 620 5 ASN B 103 OD1 86.9 86.4 75.7 71.5 REMARK 620 6 ASP B 104 OD1 162.1 82.7 114.9 69.1 87.2 REMARK 620 7 FUC F 3 O3 118.4 132.2 72.9 63.0 134.5 77.3 REMARK 620 8 FUC F 3 O4 77.8 77.1 114.7 129.0 159.1 103.1 66.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 199 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 53.0 REMARK 620 3 ASP B 99 OD1 86.2 80.9 REMARK 620 4 ASP B 101 OD1 76.8 128.9 87.7 REMARK 620 5 ASP B 104 OD1 117.2 130.0 148.1 78.0 REMARK 620 6 ASP B 104 OD2 82.2 79.0 159.9 105.4 51.6 REMARK 620 7 FUC F 3 O2 144.2 91.7 94.4 139.0 79.0 85.6 REMARK 620 8 FUC F 3 O3 147.1 145.0 75.1 75.7 73.8 122.4 65.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 21 O REMARK 620 2 ASP C 101 OD2 153.4 REMARK 620 3 ASP C 101 OD1 143.5 45.6 REMARK 620 4 ASN C 103 OD1 85.3 75.9 71.5 REMARK 620 5 ASP C 104 OD1 81.8 115.1 69.5 86.7 REMARK 620 6 GLY D 114 O 79.5 80.7 124.8 86.3 160.5 REMARK 620 7 FUC G 4 O4 78.0 114.8 129.4 158.8 103.5 78.0 REMARK 620 8 FUC G 4 O3 131.8 73.8 64.2 135.7 77.8 119.3 65.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 199 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE1 REMARK 620 2 GLU C 95 OE2 53.3 REMARK 620 3 ASP C 99 OD1 86.7 81.8 REMARK 620 4 ASP C 101 OD1 77.1 129.7 88.2 REMARK 620 5 ASP C 104 OD2 82.4 78.5 160.3 105.1 REMARK 620 6 ASP C 104 OD1 116.9 129.3 147.8 77.2 51.3 REMARK 620 7 FUC G 4 O3 148.0 146.9 77.0 75.1 120.0 71.6 REMARK 620 8 FUC G 4 O2 143.9 91.4 95.8 138.8 83.7 77.9 66.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 114 O REMARK 620 2 ASN D 21 O 80.2 REMARK 620 3 ASP D 101 OD2 80.8 155.2 REMARK 620 4 ASP D 101 OD1 125.0 144.3 45.6 REMARK 620 5 ASN D 103 OD1 86.2 86.5 76.4 72.4 REMARK 620 6 ASP D 104 OD1 161.7 82.1 114.7 69.2 88.2 REMARK 620 7 FUC H 4 O4 77.9 78.1 113.2 127.7 159.3 102.9 REMARK 620 8 FUC H 4 O3 118.3 131.0 72.6 63.5 135.8 77.3 64.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 199 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 53.1 REMARK 620 3 ASP D 99 OD1 86.1 80.9 REMARK 620 4 ASP D 101 OD1 76.6 128.9 88.0 REMARK 620 5 ASP D 104 OD2 82.7 78.6 159.5 105.8 REMARK 620 6 ASP D 104 OD1 116.9 129.5 148.7 77.9 51.3 REMARK 620 7 FUC H 4 O3 147.3 146.7 77.0 75.1 120.7 72.4 REMARK 620 8 FUC H 4 O2 142.7 89.8 92.4 140.7 86.3 81.8 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A6Q RELATED DB: PDB REMARK 900 NATIVE STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA REMARK 900 STRAIN PA14 REMARK 900 RELATED ID: 5A6X RELATED DB: PDB REMARK 900 STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN REMARK 900 PA14 IN COMPLEX WITH ALPHA-METHYL-FUCOSIDE REMARK 900 RELATED ID: 5A6Y RELATED DB: PDB REMARK 900 STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN REMARK 900 PA14 IN COMPLEX WITH MANNOSE-ALPHA1,3MANNOSIDE REMARK 900 RELATED ID: 5A70 RELATED DB: PDB REMARK 900 STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN REMARK 900 PA14 IN COMPLEX WITH LEWIS X TETRASACCHARIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 TERMINAL METHIONINE CLEAVED OFF IN THE MATURE PROTEIN SO REMARK 999 THE NUMBERING IS SHIFTED BY ONE DBREF 5A6Z A 1 114 UNP U8MRX2 U8MRX2_PSEAI 2 115 DBREF 5A6Z B 1 114 UNP U8MRX2 U8MRX2_PSEAI 2 115 DBREF 5A6Z C 1 114 UNP U8MRX2 U8MRX2_PSEAI 2 115 DBREF 5A6Z D 1 114 UNP U8MRX2 U8MRX2_PSEAI 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 A 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 A 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 A 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 B 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 B 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 B 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 C 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 C 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 C 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 D 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 D 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 D 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET GLA E 1 10 HET NAG E 2 14 HET GAL E 3 11 HET FUC E 4 10 HET NAG F 1 15 HET GAL F 2 11 HET FUC F 3 10 HET GAL G 1 12 HET NAG G 2 14 HET GAL G 3 11 HET FUC G 4 10 HET GLA H 1 12 HET NAG H 2 14 HET GAL H 3 11 HET FUC H 4 10 HET CA A 199 1 HET CA A 200 1 HET SO4 A 211 5 HET CA B 199 1 HET CA B 200 1 HET SO4 B 211 5 HET CA C 199 1 HET CA C 200 1 HET SO4 C 211 5 HET CA D 199 1 HET CA D 200 1 HET PEG D 210 14 HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 GLA 2(C6 H12 O6) FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 5 GAL 5(C6 H12 O6) FORMUL 5 FUC 4(C6 H12 O5) FORMUL 9 CA 8(CA 2+) FORMUL 11 SO4 3(O4 S 2-) FORMUL 20 PEG C4 H10 O3 FORMUL 21 HOH *863(H2 O) SHEET 1 AA 4 VAL A 5 THR A 7 0 SHEET 2 AA 4 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA 4 GLN A 26 VAL A 32 -1 O THR A 27 N SER A 68 SHEET 4 AA 4 GLU A 35 GLY A 42 -1 O ALA A 38 N VAL A 30 SHEET 1 AB 5 ILE A 50 ASN A 56 0 SHEET 2 AB 5 GLN A 13 ALA A 20 -1 O VAL A 16 N LYS A 53 SHEET 3 AB 5 ASP A 104 TRP A 111 -1 O VAL A 108 N THR A 17 SHEET 4 AB 5 GLU A 86 SER A 94 -1 O VAL A 92 N VAL A 107 SHEET 5 AB 5 ASP A 75 LEU A 83 -1 O ALA A 79 N LEU A 91 SHEET 1 BA 4 VAL B 5 THR B 7 0 SHEET 2 BA 4 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 BA 4 GLN B 26 VAL B 32 -1 O THR B 27 N SER B 68 SHEET 4 BA 4 GLU B 35 GLY B 42 -1 O ALA B 38 N VAL B 30 SHEET 1 BB 5 ILE B 50 ASN B 56 0 SHEET 2 BB 5 GLN B 13 ALA B 20 -1 O VAL B 16 N LYS B 53 SHEET 3 BB 5 ASP B 104 TRP B 111 -1 O VAL B 108 N THR B 17 SHEET 4 BB 5 GLU B 86 SER B 94 -1 O VAL B 92 N VAL B 107 SHEET 5 BB 5 ASP B 75 LEU B 83 -1 O ALA B 79 N LEU B 91 SHEET 1 CA 4 VAL C 5 THR C 7 0 SHEET 2 CA 4 LYS C 62 VAL C 69 -1 O VAL C 63 N PHE C 6 SHEET 3 CA 4 GLN C 26 VAL C 32 -1 O THR C 27 N SER C 68 SHEET 4 CA 4 GLU C 35 GLY C 42 -1 O ALA C 38 N VAL C 30 SHEET 1 CB 5 ILE C 50 ASN C 56 0 SHEET 2 CB 5 GLN C 13 ALA C 20 -1 O VAL C 16 N LYS C 53 SHEET 3 CB 5 ASP C 104 TRP C 111 -1 O VAL C 108 N THR C 17 SHEET 4 CB 5 GLU C 86 SER C 94 -1 O VAL C 92 N VAL C 107 SHEET 5 CB 5 ASP C 75 LEU C 83 -1 O ALA C 79 N LEU C 91 SHEET 1 DA 4 VAL D 5 THR D 7 0 SHEET 2 DA 4 LYS D 62 VAL D 69 -1 O VAL D 63 N PHE D 6 SHEET 3 DA 4 GLN D 26 VAL D 32 -1 O THR D 27 N SER D 68 SHEET 4 DA 4 GLU D 35 GLY D 42 -1 O ALA D 38 N VAL D 30 SHEET 1 DB 5 ILE D 50 ASN D 56 0 SHEET 2 DB 5 GLN D 13 ALA D 20 -1 O VAL D 16 N LYS D 53 SHEET 3 DB 5 ASP D 104 TRP D 111 -1 O VAL D 108 N THR D 17 SHEET 4 DB 5 GLU D 86 SER D 94 -1 O VAL D 92 N VAL D 107 SHEET 5 DB 5 ASP D 75 LEU D 83 -1 O ALA D 79 N LEU D 91 LINK O3 GLA E 1 C1 NAG E 2 1555 1555 1.46 LINK O3 NAG E 2 C1 GAL E 3 1555 1555 1.41 LINK O4 NAG E 2 C1 FUC E 4 1555 1555 1.43 LINK O3 NAG F 1 C1 GAL F 2 1555 1555 1.41 LINK O4 NAG F 1 C1 FUC F 3 1555 1555 1.44 LINK O3 GAL G 1 C1 NAG G 2 1555 1555 1.46 LINK O3 NAG G 2 C1 GAL G 3 1555 1555 1.41 LINK O4 NAG G 2 C1 FUC G 4 1555 1555 1.45 LINK O3 GLA H 1 C1 NAG H 2 1555 1555 1.42 LINK O3 NAG H 2 C1 GAL H 3 1555 1555 1.42 LINK O4 NAG H 2 C1 FUC H 4 1555 1555 1.44 LINK O ASN A 21 CA CA A 200 1555 1555 2.38 LINK OE1 GLU A 95 CA CA A 199 1555 1555 2.48 LINK OE2 GLU A 95 CA CA A 199 1555 1555 2.44 LINK OD1 ASP A 99 CA CA A 199 1555 1555 2.34 LINK OD1 ASP A 101 CA CA A 199 1555 1555 2.36 LINK OD1 ASP A 101 CA CA A 200 1555 1555 3.09 LINK OD2 ASP A 101 CA CA A 200 1555 1555 2.42 LINK OD1 ASN A 103 CA CA A 200 1555 1555 2.34 LINK OD1 ASP A 104 CA CA A 199 1555 1555 2.64 LINK OD2 ASP A 104 CA CA A 199 1555 1555 2.40 LINK OD1 ASP A 104 CA CA A 200 1555 1555 2.36 LINK O GLY A 114 CA CA B 200 1555 1555 2.44 LINK CA CA A 199 O2 FUC E 4 1555 1555 2.53 LINK CA CA A 199 O3 FUC E 4 1555 1555 2.45 LINK CA CA A 200 O GLY B 114 1555 1555 2.42 LINK CA CA A 200 O4 FUC E 4 1555 1555 2.45 LINK CA CA A 200 O3 FUC E 4 1555 1555 2.50 LINK O ASN B 21 CA CA B 200 1555 1555 2.36 LINK OE1 GLU B 95 CA CA B 199 1555 1555 2.48 LINK OE2 GLU B 95 CA CA B 199 1555 1555 2.43 LINK OD1 ASP B 99 CA CA B 199 1555 1555 2.36 LINK OD1 ASP B 101 CA CA B 199 1555 1555 2.36 LINK OD2 ASP B 101 CA CA B 200 1555 1555 2.44 LINK OD1 ASP B 101 CA CA B 200 1555 1555 3.09 LINK OD1 ASN B 103 CA CA B 200 1555 1555 2.33 LINK OD1 ASP B 104 CA CA B 199 1555 1555 2.62 LINK OD2 ASP B 104 CA CA B 199 1555 1555 2.38 LINK OD1 ASP B 104 CA CA B 200 1555 1555 2.35 LINK CA CA B 199 O2 FUC F 3 1555 1555 2.54 LINK CA CA B 199 O3 FUC F 3 1555 1555 2.50 LINK CA CA B 200 O3 FUC F 3 1555 1555 2.56 LINK CA CA B 200 O4 FUC F 3 1555 1555 2.45 LINK O ASN C 21 CA CA C 200 1555 1555 2.38 LINK OE1 GLU C 95 CA CA C 199 1555 1555 2.48 LINK OE2 GLU C 95 CA CA C 199 1555 1555 2.38 LINK OD1 ASP C 99 CA CA C 199 1555 1555 2.34 LINK OD1 ASP C 101 CA CA C 199 1555 1555 2.36 LINK OD2 ASP C 101 CA CA C 200 1555 1555 2.42 LINK OD1 ASP C 101 CA CA C 200 1555 1555 3.06 LINK OD1 ASN C 103 CA CA C 200 1555 1555 2.35 LINK OD2 ASP C 104 CA CA C 199 1555 1555 2.43 LINK OD1 ASP C 104 CA CA C 199 1555 1555 2.65 LINK OD1 ASP C 104 CA CA C 200 1555 1555 2.35 LINK O GLY C 114 CA CA D 200 1555 1555 2.49 LINK CA CA C 199 O3 FUC G 4 1555 1555 2.52 LINK CA CA C 199 O2 FUC G 4 1555 1555 2.53 LINK CA CA C 200 O GLY D 114 1555 1555 2.43 LINK CA CA C 200 O4 FUC G 4 1555 1555 2.48 LINK CA CA C 200 O3 FUC G 4 1555 1555 2.46 LINK O ASN D 21 CA CA D 200 1555 1555 2.36 LINK OE1 GLU D 95 CA CA D 199 1555 1555 2.47 LINK OE2 GLU D 95 CA CA D 199 1555 1555 2.40 LINK OD1 ASP D 99 CA CA D 199 1555 1555 2.36 LINK OD1 ASP D 101 CA CA D 199 1555 1555 2.36 LINK OD2 ASP D 101 CA CA D 200 1555 1555 2.41 LINK OD1 ASP D 101 CA CA D 200 1555 1555 3.07 LINK OD1 ASN D 103 CA CA D 200 1555 1555 2.31 LINK OD2 ASP D 104 CA CA D 199 1555 1555 2.40 LINK OD1 ASP D 104 CA CA D 199 1555 1555 2.63 LINK OD1 ASP D 104 CA CA D 200 1555 1555 2.37 LINK CA CA D 199 O3 FUC H 4 1555 1555 2.51 LINK CA CA D 199 O2 FUC H 4 1555 1555 2.51 LINK CA CA D 200 O4 FUC H 4 1555 1555 2.45 LINK CA CA D 200 O3 FUC H 4 1555 1555 2.50 CISPEP 1 TRP A 111 PRO A 112 0 -6.77 CISPEP 2 TRP B 111 PRO B 112 0 -6.03 CISPEP 3 TRP C 111 PRO C 112 0 -3.10 CISPEP 4 TRP D 111 PRO D 112 0 -8.38 CRYST1 52.976 63.772 64.513 90.00 91.25 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018876 0.000000 0.000412 0.00000 SCALE2 0.000000 0.015681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015504 0.00000 MTRIX1 1 0.994000 -0.094000 0.058000 3.30269 1 MTRIX2 1 -0.094000 -0.996000 -0.006000 91.22305 1 MTRIX3 1 0.058000 0.000000 -0.998000 31.26454 1 MTRIX1 2 -0.994000 0.091000 -0.057000 34.23732 1 MTRIX2 2 0.078000 0.246000 -0.966000 47.88042 1 MTRIX3 2 -0.074000 -0.965000 -0.252000 64.70970 1 MTRIX1 3 -1.000000 0.015000 0.014000 36.54464 1 MTRIX2 3 0.010000 -0.257000 0.966000 40.62653 1 MTRIX3 3 0.018000 0.966000 0.257000 -31.59162 1