HEADER VIRUS 03-JUL-15 5A7A TITLE NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED BY TITLE 2 CRYO-EM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BARLEY STRIPE MOSAIC VIRUS NARROW; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: ONLY CONTAINS RESIDUES 3-131 AND 148-193 IN STRUCTURE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA; COMPND 8 CHAIN: R; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARLEY STRIPE MOSAIC VIRUS; SOURCE 3 ORGANISM_TAXID: 12327; SOURCE 4 STRAIN: ND18; SOURCE 5 ATCC: PV-328; SOURCE 6 EXPRESSION_SYSTEM: AGROBACTERIUM TUMEFACIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 358; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GV3101; SOURCE 9 OTHER_DETAILS: PURIFIED FROM NICOTIANA BENTHAMIANA INFECTED PLANTS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: TOBACCO MOSAIC VIRUS; SOURCE 12 ORGANISM_TAXID: 12242; SOURCE 13 EXPRESSION_SYSTEM: AGROBACTERIUM TUMEFACIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 358; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: GV3101 KEYWDS VIRUS, BSMV, HELICAL, CRYO-EM, IMAGE PROCESSING, MSA EXPDTA ELECTRON MICROSCOPY AUTHOR D.K.CLARE,E.PECHNIKOVA,E.SKURAT,V.MAKAROV,O.S.SOKOLOVA,A.G.SOLOVYEV, AUTHOR 2 E.V ORLOVA REVDAT 3 23-AUG-17 5A7A 1 REMARK REVDAT 2 21-OCT-15 5A7A 1 JRNL REVDAT 1 02-SEP-15 5A7A 0 JRNL AUTH D.K.CLARE,E.V.PECHNIKOVA,E.V.SKURAT,V.V.MAKAROV, JRNL AUTH 2 O.S.SOKOLOVA,A.G.SOLOVYEV,E.V.ORLOVA JRNL TITL NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS JRNL TITL 2 REVEALED BY CRYO-ELECTRON MICROSCOPY. JRNL REF STRUCTURE V. 23 1815 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26278173 JRNL DOI 10.1016/J.STR.2015.06.028 REMARK 2 REMARK 2 RESOLUTION. 4.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN, IMAGIC, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--RIGID BODY USING CHIMERA, FOLLOWED BY REMARK 3 FLEXIBLE FITTING IN FLEX-EM AND COOT. THEN REALSPACE REFINEMENT REMARK 3 IN PHENIX FOLLOWED BY MANUAL ADJUSTMENT IN COOT (INTERATIVE) REMARK 3 REFINEMENT PROTOCOL--CRYO-EM REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.000 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.100 REMARK 3 NUMBER OF PARTICLES : 3007 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: LAYER LINES REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5A7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290064238. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : CRYO-EM REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : CHIMERIC BARLEY STRIPE MOSAIC REMARK 245 VIRUS NARROW VIRION REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.00 REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE, HUMIDITY- 40, REMARK 245 TEMPERATURE- 100, INSTRUMENT- REMARK 245 HOMEMADE PLUNGER, METHOD- 3.5UL REMARK 245 OF SAMPLE WAS ADDED TO REMARK 245 CONTINUOUS CARBON COATED OR C- REMARK 245 FLAT GRIDS, BLOTTED FOR 2 REMARK 245 SECONDS AND THEN PLUNGED IN REMARK 245 LIQUID ETHANE, REMARK 245 SAMPLE BUFFER : 50MM TRIS-HCL, 50MM KCL, 10MM REMARK 245 MGCL2 REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-JUN-12 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 90.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.30 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 25.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 150000 REMARK 245 CALIBRATED MAGNIFICATION : 150000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = 1800.00/106 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 131.20/106 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 212-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.956100 0.293039 0.000000 249.45917 REMARK 350 BIOMT2 2 -0.293039 -0.956100 0.000000 337.37095 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -64.48000 REMARK 350 BIOMT1 3 -0.828842 0.559482 0.000000 190.40401 REMARK 350 BIOMT2 3 -0.559482 -0.828842 0.000000 358.24869 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -63.24000 REMARK 350 BIOMT1 4 -0.629320 0.777146 0.000000 127.82616 REMARK 350 BIOMT2 4 -0.777146 -0.629320 0.000000 360.96995 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -62.00000 REMARK 350 BIOMT1 5 -0.374930 0.927053 0.000000 67.18158 REMARK 350 BIOMT2 5 -0.927053 -0.374930 0.000000 345.29749 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -60.76000 REMARK 350 BIOMT1 6 -0.087851 0.996134 0.000000 13.75764 REMARK 350 BIOMT2 6 -0.996134 -0.087851 0.000000 312.59772 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -59.52000 REMARK 350 BIOMT1 7 0.206887 0.978365 0.000000 -27.78781 REMARK 350 BIOMT2 7 -0.978365 0.206887 0.000000 265.72163 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -58.28000 REMARK 350 BIOMT1 8 0.483588 0.875296 0.000000 -53.83256 REMARK 350 BIOMT2 8 -0.875296 0.483588 0.000000 208.75617 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -57.04000 REMARK 350 BIOMT1 9 0.718126 0.695913 0.000000 -62.10586 REMARK 350 BIOMT2 9 -0.695913 0.718126 0.000000 146.66797 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -55.80000 REMARK 350 BIOMT1 10 0.890054 0.455856 0.000000 -51.88640 REMARK 350 BIOMT2 10 -0.455856 0.890054 0.000000 84.87028 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -54.56000 REMARK 350 BIOMT1 11 0.984381 0.176054 0.000000 -24.06518 REMARK 350 BIOMT2 11 -0.176054 0.984381 0.000000 28.75102 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -53.32000 REMARK 350 BIOMT1 12 0.992883 -0.119097 0.000000 18.93218 REMARK 350 BIOMT2 12 0.119097 0.992883 0.000000 -16.79696 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 -52.08000 REMARK 350 BIOMT1 13 0.914819 -0.403865 0.000000 73.35689 REMARK 350 BIOMT2 13 0.403865 0.914819 0.000000 -47.80251 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 -50.84000 REMARK 350 BIOMT1 14 0.756995 -0.653421 0.000000 134.46383 REMARK 350 BIOMT2 14 0.653421 0.756995 0.000000 -61.56235 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 -49.60000 REMARK 350 BIOMT1 15 0.533172 -0.846007 0.000000 196.92532 REMARK 350 BIOMT2 15 0.846007 0.533172 0.000000 -56.87681 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 -48.36000 REMARK 350 BIOMT1 16 0.262863 -0.964833 0.000000 255.29556 REMARK 350 BIOMT2 16 0.964833 0.262863 0.000000 -34.15441 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 -47.12000 REMARK 350 BIOMT1 17 -0.030364 -0.999539 0.000000 304.48545 REMARK 350 BIOMT2 17 0.999539 -0.030364 0.000000 4.62377 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 -45.88000 REMARK 350 BIOMT1 18 -0.320944 -0.947098 0.000000 340.20629 REMARK 350 BIOMT2 18 0.947098 -0.320944 0.000000 56.07680 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 -44.64000 REMARK 350 BIOMT1 19 -0.583541 -0.812084 0.000000 359.34371 REMARK 350 BIOMT2 19 0.812084 -0.583541 0.000000 115.71865 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 -43.40000 REMARK 350 BIOMT1 20 -0.795262 -0.606266 0.000000 360.22919 REMARK 350 BIOMT2 20 0.606266 -0.795262 0.000000 178.34938 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 -42.16000 REMARK 350 BIOMT1 21 -0.937646 -0.347590 0.000000 342.78553 REMARK 350 BIOMT2 21 0.347590 -0.937646 0.000000 238.50842 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 -40.92000 REMARK 350 BIOMT1 22 -0.998281 -0.058609 0.000000 308.53357 REMARK 350 BIOMT2 22 0.058609 -0.998281 0.000000 290.95073 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 -39.68000 REMARK 350 BIOMT1 23 -0.971879 0.235481 0.000000 260.45962 REMARK 350 BIOMT2 23 -0.235481 -0.971879 0.000000 331.10404 REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 -38.44000 REMARK 350 BIOMT1 24 -0.860742 0.509041 0.000000 202.75509 REMARK 350 BIOMT2 24 -0.509041 -0.860742 0.000000 355.46752 REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 -37.20000 REMARK 350 BIOMT1 25 -0.674560 0.738220 0.000000 140.45103 REMARK 350 BIOMT2 25 -0.738220 -0.674560 0.000000 361.91701 REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 -35.96000 REMARK 350 BIOMT1 26 -0.429566 0.903036 0.000000 78.97951 REMARK 350 BIOMT2 26 -0.903036 -0.429566 0.000000 349.89019 REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 -34.72000 REMARK 350 BIOMT1 27 -0.147119 0.989119 0.000000 23.70001 REMARK 350 BIOMT2 27 -0.989119 -0.147119 0.000000 320.43566 REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 -33.48000 REMARK 350 BIOMT1 28 0.148155 0.988964 0.000000 -20.56783 REMARK 350 BIOMT2 28 -0.988964 0.148155 0.000000 276.12144 REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 -32.24000 REMARK 350 BIOMT1 29 0.430511 0.902585 0.000000 -49.96446 REMARK 350 BIOMT2 29 -0.902585 0.430511 0.000000 220.81113 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 -31.00000 REMARK 350 BIOMT1 30 0.675333 0.737513 0.000000 -61.92689 REMARK 350 BIOMT2 30 -0.737513 0.675333 0.000000 159.32705 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 -29.76000 REMARK 350 BIOMT1 31 0.861275 0.508140 0.000000 -55.41216 REMARK 350 BIOMT2 31 -0.508140 0.861275 0.000000 97.02977 REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 -28.52000 REMARK 350 BIOMT1 32 0.972125 0.234463 0.000000 -30.98826 REMARK 350 BIOMT2 32 -0.234463 0.972125 0.000000 39.35079 REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 -27.28000 REMARK 350 BIOMT1 33 0.998219 -0.059655 0.000000 9.21536 REMARK 350 BIOMT2 33 0.059655 0.998219 0.000000 -8.68108 REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 -26.04000 REMARK 350 BIOMT1 34 0.937282 -0.348572 0.000000 61.69351 REMARK 350 BIOMT2 34 0.348572 0.937282 0.000000 -42.87811 REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 -24.80000 REMARK 350 BIOMT1 35 0.794627 -0.607098 0.000000 121.87079 REMARK 350 BIOMT2 35 0.607098 0.794627 0.000000 -60.25876 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 -23.56000 REMARK 350 BIOMT1 36 0.582690 -0.812694 0.000000 184.50055 REMARK 350 BIOMT2 36 0.812694 0.582690 0.000000 -59.30770 REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 -22.32000 REMARK 350 BIOMT1 37 0.319952 -0.947434 0.000000 244.12234 REMARK 350 BIOMT2 37 0.947434 0.319952 0.000000 -40.10783 REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 -21.08000 REMARK 350 BIOMT1 38 0.029317 -0.999570 0.000000 295.53792 REMARK 350 BIOMT2 38 0.999570 0.029317 0.000000 -4.33312 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 -19.84000 REMARK 350 BIOMT1 39 -0.263873 -0.964557 0.000000 334.26457 REMARK 350 BIOMT2 39 0.964557 -0.263873 0.000000 44.89734 REMARK 350 BIOMT3 39 0.000000 0.000000 1.000000 -18.60000 REMARK 350 BIOMT1 40 -0.534057 -0.845448 0.000000 356.92584 REMARK 350 BIOMT2 40 0.845448 -0.534057 0.000000 103.29134 REMARK 350 BIOMT3 40 0.000000 0.000000 1.000000 -17.36000 REMARK 350 BIOMT1 41 -0.757679 -0.652628 0.000000 361.54596 REMARK 350 BIOMT2 41 0.652628 -0.757679 0.000000 165.75771 REMARK 350 BIOMT3 41 0.000000 0.000000 1.000000 -16.12000 REMARK 350 BIOMT1 42 -0.915241 -0.402906 0.000000 347.72214 REMARK 350 BIOMT2 42 0.402906 -0.915241 0.000000 226.85021 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 -14.88000 REMARK 350 BIOMT1 43 -0.993007 -0.118057 0.000000 316.65962 REMARK 350 BIOMT2 43 0.118057 -0.993007 0.000000 281.24241 REMARK 350 BIOMT3 43 0.000000 0.000000 1.000000 -13.64000 REMARK 350 BIOMT1 44 -0.984196 0.177085 0.000000 271.06663 REMARK 350 BIOMT2 44 -0.177085 -0.984196 0.000000 324.19205 REMARK 350 BIOMT3 44 0.000000 0.000000 1.000000 -12.40000 REMARK 350 BIOMT1 45 -0.889576 0.456787 0.000000 214.91827 REMARK 350 BIOMT2 45 -0.456787 -0.889576 0.000000 351.95450 REMARK 350 BIOMT3 45 0.000000 0.000000 1.000000 -11.16000 REMARK 350 BIOMT1 46 -0.717397 0.696664 0.000000 153.10991 REMARK 350 BIOMT2 46 -0.696664 -0.717397 0.000000 362.10924 REMARK 350 BIOMT3 46 0.000000 0.000000 1.000000 -9.92000 REMARK 350 BIOMT1 47 -0.482671 0.875802 0.000000 91.03041 REMARK 350 BIOMT2 47 -0.875802 -0.482671 0.000000 353.77092 REMARK 350 BIOMT3 47 0.000000 0.000000 1.000000 -8.68000 REMARK 350 BIOMT1 48 -0.205863 0.978581 0.000000 34.09226 REMARK 350 BIOMT2 48 -0.978581 -0.205863 0.000000 327.66653 REMARK 350 BIOMT3 48 0.000000 0.000000 1.000000 -7.44000 REMARK 350 BIOMT1 49 0.088894 0.996041 0.000000 -12.74030 REMARK 350 BIOMT2 49 -0.996041 0.088894 0.000000 286.07202 REMARK 350 BIOMT3 49 0.000000 0.000000 1.000000 -6.20000 REMARK 350 BIOMT1 50 0.375901 0.926660 0.000000 -45.38411 REMARK 350 BIOMT2 50 -0.926660 0.375901 0.000000 232.61386 REMARK 350 BIOMT3 50 0.000000 0.000000 1.000000 -4.96000 REMARK 350 BIOMT1 51 0.630134 0.776487 0.000000 -60.99306 REMARK 350 BIOMT2 51 -0.776487 0.630134 0.000000 171.95290 REMARK 350 BIOMT3 51 0.000000 0.000000 1.000000 -3.72000 REMARK 350 BIOMT1 52 0.829428 0.558614 0.000000 -58.20626 REMARK 350 BIOMT2 52 -0.558614 0.829428 0.000000 109.37793 REMARK 350 BIOMT3 52 0.000000 0.000000 1.000000 -2.48000 REMARK 350 BIOMT1 53 0.956407 0.292038 0.000000 -37.26669 REMARK 350 BIOMT2 53 -0.292038 0.956407 0.000000 50.34467 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 -1.24000 REMARK 350 BIOMT1 54 0.956407 -0.292038 0.000000 50.34467 REMARK 350 BIOMT2 54 0.292038 0.956407 0.000000 -37.26669 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 1.24000 REMARK 350 BIOMT1 55 0.829428 -0.558614 0.000000 109.37793 REMARK 350 BIOMT2 55 0.558614 0.829428 0.000000 -58.20626 REMARK 350 BIOMT3 55 0.000000 0.000000 1.000000 2.48000 REMARK 350 BIOMT1 56 0.630134 -0.776487 0.000000 171.95290 REMARK 350 BIOMT2 56 0.776487 0.630134 0.000000 -60.99306 REMARK 350 BIOMT3 56 0.000000 0.000000 1.000000 3.72000 REMARK 350 BIOMT1 57 0.375901 -0.926660 0.000000 232.61386 REMARK 350 BIOMT2 57 0.926660 0.375901 0.000000 -45.38411 REMARK 350 BIOMT3 57 0.000000 0.000000 1.000000 4.96000 REMARK 350 BIOMT1 58 0.088894 -0.996041 0.000000 286.07202 REMARK 350 BIOMT2 58 0.996041 0.088894 0.000000 -12.74030 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 6.20000 REMARK 350 BIOMT1 59 -0.205863 -0.978581 0.000000 327.66653 REMARK 350 BIOMT2 59 0.978581 -0.205863 0.000000 34.09226 REMARK 350 BIOMT3 59 0.000000 0.000000 1.000000 7.44000 REMARK 350 BIOMT1 60 -0.482671 -0.875802 0.000000 353.77092 REMARK 350 BIOMT2 60 0.875802 -0.482671 0.000000 91.03041 REMARK 350 BIOMT3 60 0.000000 0.000000 1.000000 8.68000 REMARK 350 BIOMT1 61 -0.717397 -0.696664 0.000000 362.10924 REMARK 350 BIOMT2 61 0.696664 -0.717397 0.000000 153.10991 REMARK 350 BIOMT3 61 0.000000 0.000000 1.000000 9.92000 REMARK 350 BIOMT1 62 -0.889576 -0.456787 0.000000 351.95450 REMARK 350 BIOMT2 62 0.456787 -0.889576 0.000000 214.91827 REMARK 350 BIOMT3 62 0.000000 0.000000 1.000000 11.16000 REMARK 350 BIOMT1 63 -0.984196 -0.177085 0.000000 324.19205 REMARK 350 BIOMT2 63 0.177085 -0.984196 0.000000 271.06663 REMARK 350 BIOMT3 63 0.000000 0.000000 1.000000 12.40000 REMARK 350 BIOMT1 64 -0.993007 0.118057 0.000000 281.24241 REMARK 350 BIOMT2 64 -0.118057 -0.993007 0.000000 316.65962 REMARK 350 BIOMT3 64 0.000000 0.000000 1.000000 13.64000 REMARK 350 BIOMT1 65 -0.915241 0.402906 0.000000 226.85021 REMARK 350 BIOMT2 65 -0.402906 -0.915241 0.000000 347.72214 REMARK 350 BIOMT3 65 0.000000 0.000000 1.000000 14.88000 REMARK 350 BIOMT1 66 -0.757679 0.652628 0.000000 165.75771 REMARK 350 BIOMT2 66 -0.652628 -0.757679 0.000000 361.54596 REMARK 350 BIOMT3 66 0.000000 0.000000 1.000000 16.12000 REMARK 350 BIOMT1 67 -0.534057 0.845448 0.000000 103.29134 REMARK 350 BIOMT2 67 -0.845448 -0.534057 0.000000 356.92584 REMARK 350 BIOMT3 67 0.000000 0.000000 1.000000 17.36000 REMARK 350 BIOMT1 68 -0.263873 0.964557 0.000000 44.89734 REMARK 350 BIOMT2 68 -0.964557 -0.263873 0.000000 334.26457 REMARK 350 BIOMT3 68 0.000000 0.000000 1.000000 18.60000 REMARK 350 BIOMT1 69 0.029317 0.999570 0.000000 -4.33312 REMARK 350 BIOMT2 69 -0.999570 0.029317 0.000000 295.53792 REMARK 350 BIOMT3 69 0.000000 0.000000 1.000000 19.84000 REMARK 350 BIOMT1 70 0.319952 0.947434 0.000000 -40.10783 REMARK 350 BIOMT2 70 -0.947434 0.319952 0.000000 244.12234 REMARK 350 BIOMT3 70 0.000000 0.000000 1.000000 21.08000 REMARK 350 BIOMT1 71 0.582690 0.812694 0.000000 -59.30770 REMARK 350 BIOMT2 71 -0.812694 0.582690 0.000000 184.50055 REMARK 350 BIOMT3 71 0.000000 0.000000 1.000000 22.32000 REMARK 350 BIOMT1 72 0.794627 0.607098 0.000000 -60.25876 REMARK 350 BIOMT2 72 -0.607098 0.794627 0.000000 121.87079 REMARK 350 BIOMT3 72 0.000000 0.000000 1.000000 23.56000 REMARK 350 BIOMT1 73 0.937282 0.348572 0.000000 -42.87811 REMARK 350 BIOMT2 73 -0.348572 0.937282 0.000000 61.69351 REMARK 350 BIOMT3 73 0.000000 0.000000 1.000000 24.80000 REMARK 350 BIOMT1 74 0.998219 0.059655 0.000000 -8.68108 REMARK 350 BIOMT2 74 -0.059655 0.998219 0.000000 9.21536 REMARK 350 BIOMT3 74 0.000000 0.000000 1.000000 26.04000 REMARK 350 BIOMT1 75 0.972125 -0.234463 0.000000 39.35079 REMARK 350 BIOMT2 75 0.234463 0.972125 0.000000 -30.98826 REMARK 350 BIOMT3 75 0.000000 0.000000 1.000000 27.28000 REMARK 350 BIOMT1 76 0.861275 -0.508140 0.000000 97.02977 REMARK 350 BIOMT2 76 0.508140 0.861275 0.000000 -55.41216 REMARK 350 BIOMT3 76 0.000000 0.000000 1.000000 28.52000 REMARK 350 BIOMT1 77 0.675333 -0.737513 0.000000 159.32705 REMARK 350 BIOMT2 77 0.737513 0.675333 0.000000 -61.92689 REMARK 350 BIOMT3 77 0.000000 0.000000 1.000000 29.76000 REMARK 350 BIOMT1 78 0.430511 -0.902585 0.000000 220.81113 REMARK 350 BIOMT2 78 0.902585 0.430511 0.000000 -49.96446 REMARK 350 BIOMT3 78 0.000000 0.000000 1.000000 31.00000 REMARK 350 BIOMT1 79 0.148155 -0.988964 0.000000 276.12144 REMARK 350 BIOMT2 79 0.988964 0.148155 0.000000 -20.56783 REMARK 350 BIOMT3 79 0.000000 0.000000 1.000000 32.24000 REMARK 350 BIOMT1 80 -0.147119 -0.989119 0.000000 320.43566 REMARK 350 BIOMT2 80 0.989119 -0.147119 0.000000 23.70001 REMARK 350 BIOMT3 80 0.000000 0.000000 1.000000 33.48000 REMARK 350 BIOMT1 81 -0.429566 -0.903036 0.000000 349.89019 REMARK 350 BIOMT2 81 0.903036 -0.429566 0.000000 78.97951 REMARK 350 BIOMT3 81 0.000000 0.000000 1.000000 34.72000 REMARK 350 BIOMT1 82 -0.674560 -0.738220 0.000000 361.91701 REMARK 350 BIOMT2 82 0.738220 -0.674560 0.000000 140.45103 REMARK 350 BIOMT3 82 0.000000 0.000000 1.000000 35.96000 REMARK 350 BIOMT1 83 -0.860742 -0.509041 0.000000 355.46752 REMARK 350 BIOMT2 83 0.509041 -0.860742 0.000000 202.75509 REMARK 350 BIOMT3 83 0.000000 0.000000 1.000000 37.20000 REMARK 350 BIOMT1 84 -0.971879 -0.235481 0.000000 331.10404 REMARK 350 BIOMT2 84 0.235481 -0.971879 0.000000 260.45962 REMARK 350 BIOMT3 84 0.000000 0.000000 1.000000 38.44000 REMARK 350 BIOMT1 85 -0.998281 0.058609 0.000000 290.95073 REMARK 350 BIOMT2 85 -0.058609 -0.998281 0.000000 308.53357 REMARK 350 BIOMT3 85 0.000000 0.000000 1.000000 39.68000 REMARK 350 BIOMT1 86 -0.937646 0.347590 0.000000 238.50842 REMARK 350 BIOMT2 86 -0.347590 -0.937646 0.000000 342.78553 REMARK 350 BIOMT3 86 0.000000 0.000000 1.000000 40.92000 REMARK 350 BIOMT1 87 -0.795262 0.606266 0.000000 178.34938 REMARK 350 BIOMT2 87 -0.606266 -0.795262 0.000000 360.22919 REMARK 350 BIOMT3 87 0.000000 0.000000 1.000000 42.16000 REMARK 350 BIOMT1 88 -0.583541 0.812084 0.000000 115.71865 REMARK 350 BIOMT2 88 -0.812084 -0.583541 0.000000 359.34371 REMARK 350 BIOMT3 88 0.000000 0.000000 1.000000 43.40000 REMARK 350 BIOMT1 89 -0.320944 0.947098 0.000000 56.07680 REMARK 350 BIOMT2 89 -0.947098 -0.320944 0.000000 340.20629 REMARK 350 BIOMT3 89 0.000000 0.000000 1.000000 44.64000 REMARK 350 BIOMT1 90 -0.030364 0.999539 0.000000 4.62377 REMARK 350 BIOMT2 90 -0.999539 -0.030364 0.000000 304.48545 REMARK 350 BIOMT3 90 0.000000 0.000000 1.000000 45.88000 REMARK 350 BIOMT1 91 0.262863 0.964833 0.000000 -34.15441 REMARK 350 BIOMT2 91 -0.964833 0.262863 0.000000 255.29556 REMARK 350 BIOMT3 91 0.000000 0.000000 1.000000 47.12000 REMARK 350 BIOMT1 92 0.533172 0.846007 0.000000 -56.87681 REMARK 350 BIOMT2 92 -0.846007 0.533172 0.000000 196.92532 REMARK 350 BIOMT3 92 0.000000 0.000000 1.000000 48.36000 REMARK 350 BIOMT1 93 0.756995 0.653421 0.000000 -61.56235 REMARK 350 BIOMT2 93 -0.653421 0.756995 0.000000 134.46383 REMARK 350 BIOMT3 93 0.000000 0.000000 1.000000 49.60000 REMARK 350 BIOMT1 94 0.914819 0.403865 0.000000 -47.80251 REMARK 350 BIOMT2 94 -0.403865 0.914819 0.000000 73.35689 REMARK 350 BIOMT3 94 0.000000 0.000000 1.000000 50.84000 REMARK 350 BIOMT1 95 0.992883 0.119097 0.000000 -16.79696 REMARK 350 BIOMT2 95 -0.119097 0.992883 0.000000 18.93218 REMARK 350 BIOMT3 95 0.000000 0.000000 1.000000 52.08000 REMARK 350 BIOMT1 96 0.984381 -0.176054 0.000000 28.75102 REMARK 350 BIOMT2 96 0.176054 0.984381 0.000000 -24.06518 REMARK 350 BIOMT3 96 0.000000 0.000000 1.000000 53.32000 REMARK 350 BIOMT1 97 0.890054 -0.455856 0.000000 84.87028 REMARK 350 BIOMT2 97 0.455856 0.890054 0.000000 -51.88640 REMARK 350 BIOMT3 97 0.000000 0.000000 1.000000 54.56000 REMARK 350 BIOMT1 98 0.718126 -0.695913 0.000000 146.66797 REMARK 350 BIOMT2 98 0.695913 0.718126 0.000000 -62.10586 REMARK 350 BIOMT3 98 0.000000 0.000000 1.000000 55.80000 REMARK 350 BIOMT1 99 0.483588 -0.875296 0.000000 208.75617 REMARK 350 BIOMT2 99 0.875296 0.483588 0.000000 -53.83256 REMARK 350 BIOMT3 99 0.000000 0.000000 1.000000 57.04000 REMARK 350 BIOMT1 100 0.206887 -0.978365 0.000000 265.72163 REMARK 350 BIOMT2 100 0.978365 0.206887 0.000000 -27.78781 REMARK 350 BIOMT3 100 0.000000 0.000000 1.000000 58.28000 REMARK 350 BIOMT1 101 -0.087851 -0.996134 0.000000 312.59772 REMARK 350 BIOMT2 101 0.996134 -0.087851 0.000000 13.75764 REMARK 350 BIOMT3 101 0.000000 0.000000 1.000000 59.52000 REMARK 350 BIOMT1 102 -0.374930 -0.927053 0.000000 345.29749 REMARK 350 BIOMT2 102 0.927053 -0.374930 0.000000 67.18158 REMARK 350 BIOMT3 102 0.000000 0.000000 1.000000 60.76000 REMARK 350 BIOMT1 103 -0.629320 -0.777146 0.000000 360.96995 REMARK 350 BIOMT2 103 0.777146 -0.629320 0.000000 127.82616 REMARK 350 BIOMT3 103 0.000000 0.000000 1.000000 62.00000 REMARK 350 BIOMT1 104 -0.828842 -0.559482 0.000000 358.24869 REMARK 350 BIOMT2 104 0.559482 -0.828842 0.000000 190.40401 REMARK 350 BIOMT3 104 0.000000 0.000000 1.000000 63.24000 REMARK 350 BIOMT1 105 -0.956100 -0.293039 0.000000 337.37095 REMARK 350 BIOMT2 105 0.293039 -0.956100 0.000000 249.45917 REMARK 350 BIOMT3 105 0.000000 0.000000 1.000000 64.48000 REMARK 350 BIOMT1 106 -0.999999 -0.001047 0.000000 300.15700 REMARK 350 BIOMT2 106 0.001047 -0.999999 0.000000 299.84284 REMARK 350 BIOMT3 106 0.000000 0.000000 1.000000 65.72000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 132 REMARK 465 THR A 133 REMARK 465 THR A 134 REMARK 465 ASN A 135 REMARK 465 PRO A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 ALA A 140 REMARK 465 GLN A 141 REMARK 465 ALA A 142 REMARK 465 PRO A 143 REMARK 465 SER A 144 REMARK 465 GLU A 145 REMARK 465 ASN A 146 REMARK 465 LEU A 147 REMARK 465 ASP A 194 REMARK 465 ALA A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 ALA A 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 74 N ARG A 77 2.12 REMARK 500 NE2 GLN A 18 O ALA A 187 2.17 REMARK 500 O ASN A 120 N ARG A 122 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 4 -5.39 -55.50 REMARK 500 SER A 5 -122.79 52.66 REMARK 500 LEU A 6 -128.39 63.60 REMARK 500 GLU A 16 -0.55 76.86 REMARK 500 VAL A 23 -64.04 -124.01 REMARK 500 PHE A 29 -57.20 70.12 REMARK 500 ALA A 54 153.76 -49.58 REMARK 500 SER A 55 -2.50 77.76 REMARK 500 ALA A 66 -4.75 82.35 REMARK 500 TYR A 91 -69.41 -135.09 REMARK 500 ARG A 122 49.66 -82.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 113 LEU A 114 148.52 REMARK 500 ASN A 120 ASN A 121 -146.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A79 RELATED DB: PDB REMARK 900 NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED REMARK 900 BY CRYO-EM REMARK 900 RELATED ID: EMD-3074 RELATED DB: EMDB REMARK 900 NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED REMARK 900 BY CRYO-EM REMARK 999 REMARK 999 SEQUENCE REMARK 999 ONLY CONTAINS RESIDUES 3-131 AND 148-193 IN STRUCTURE DBREF 5A7A A 1 198 UNP P04866 CAPSD_BSMV 1 198 DBREF 5A7A R 1 3 PDB 5A7A 5A7A 1 3 SEQRES 1 A 198 MET PRO ASN VAL SER LEU THR ALA LYS GLY GLY GLY HIS SEQRES 2 A 198 TYR ILE GLU ASP GLN TRP ASP THR GLN VAL VAL GLU ALA SEQRES 3 A 198 GLY VAL PHE ASP ASP TRP TRP VAL HIS VAL GLU ALA TRP SEQRES 4 A 198 ASN LYS PHE LEU ASP ASN LEU ARG GLY ILE ASN PHE SER SEQRES 5 A 198 VAL ALA SER SER ARG SER GLN VAL ALA GLU TYR LEU ALA SEQRES 6 A 198 ALA LEU ASP ARG ASP LEU PRO ALA ASP VAL ASP ARG ARG SEQRES 7 A 198 PHE ALA GLY ALA ARG GLY GLN ILE GLY SER PRO ASN TYR SEQRES 8 A 198 LEU PRO ALA PRO LYS PHE PHE ARG LEU ASP LYS ARG THR SEQRES 9 A 198 ILE ALA GLU LEU THR ARG LEU SER ARG LEU THR ASP GLN SEQRES 10 A 198 PRO HIS ASN ASN ARG ASP ILE GLU LEU ASN ARG ALA LYS SEQRES 11 A 198 ARG ALA THR THR ASN PRO SER PRO PRO ALA GLN ALA PRO SEQRES 12 A 198 SER GLU ASN LEU THR LEU ARG ASP VAL GLN PRO LEU LYS SEQRES 13 A 198 ASP SER ALA LEU HIS TYR GLN TYR VAL LEU ILE ASP LEU SEQRES 14 A 198 GLN SER ALA ARG LEU PRO VAL TYR THR ARG LYS THR PHE SEQRES 15 A 198 GLU ARG GLU LEU ALA LEU GLU TRP ILE ILE PRO ASP ALA SEQRES 16 A 198 GLU GLU ALA SEQRES 1 R 3 G A A HELIX 1 1 GLN A 18 VAL A 23 1 6 HELIX 2 2 ALA A 38 LEU A 46 1 9 HELIX 3 3 ARG A 57 LEU A 64 1 8 HELIX 4 4 ASP A 101 THR A 115 1 15 HELIX 5 5 ASP A 123 ALA A 129 1 7 HELIX 6 6 VAL A 152 ALA A 172 1 21 HELIX 7 7 THR A 178 LEU A 186 1 9 SHEET 1 AA 3 TRP A 33 HIS A 35 0 SHEET 2 AA 3 PHE A 97 ARG A 99 -1 O PHE A 98 N VAL A 34 SHEET 3 AA 3 VAL A 176 TYR A 177 -1 O TYR A 177 N PHE A 97 CISPEP 1 ASN A 3 VAL A 4 0 -0.01 CISPEP 2 GLY A 12 HIS A 13 0 -7.25 CISPEP 3 ARG A 47 GLY A 48 0 22.43 CISPEP 4 PHE A 51 SER A 52 0 -10.89 CISPEP 5 VAL A 75 ASP A 76 0 4.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000