HEADER VIRAL PROTEIN 15-JUL-15 5A8F TITLE STRUCTURE AND GENOME RELEASE MECHANISM OF HUMAN CARDIOVIRUS SAFFOLD TITLE 2 VIRUS-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN SAFFOLD VIRUS-3 VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: GENOME POLYPHUMAN SAFFOLD VIRUS-3 VP3 PROTEIN; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: HUMAN SAFFOLD VIRUS-3 VP2; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SAFFOLD VIRUS; SOURCE 3 ORGANISM_TAXID: 434309; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SAFFOLD VIRUS; SOURCE 6 ORGANISM_TAXID: 434309; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SAFFOLD VIRUS; SOURCE 9 ORGANISM_TAXID: 434309 KEYWDS VIRAL PROTEIN, SAFFOLD, VIRUS, CARDIOVIRUS, PICORNAVIRALES, A, KEYWDS 2 ALTERED, VIRION, PARTICLE, CAPSID, GENOME, RNA, SSRNA EXPDTA ELECTRON MICROSCOPY AUTHOR E.MULLAPUDI,J.NOVACEK,L.PALKOVA,P.KULICH,M.LINDBERG, AUTHOR 2 F.J.M.VANKUPPEVELD,P.PLEVKA REVDAT 5 30-OCT-19 5A8F 1 REMARK LINK REVDAT 4 30-AUG-17 5A8F 1 REMARK REVDAT 3 31-AUG-16 5A8F 1 JRNL REVDAT 2 22-JUN-16 5A8F 1 JRNL REVDAT 1 08-JUN-16 5A8F 0 JRNL AUTH E.MULLAPUDI,J.NOVACEK,L.PALKOVA,P.KULICH,A.M.LINDBERG, JRNL AUTH 2 F.J.M.VAN KUPPEVELD,P.PLEVKA JRNL TITL STRUCTURE AND GENOME RELEASE MECHANISM OF HUMAN CARDIOVIRUS JRNL TITL 2 SAFFOLD VIRUS-3. JRNL REF J.VIROL. V. 90 7628 2016 JRNL REFN ISSN 0022-538X JRNL PMID 27279624 JRNL DOI 10.1128/JVI.00746-16 REMARK 2 REMARK 2 RESOLUTION. 10.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : JALIGN, BSOFT, EMAN, J3DR REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--LOCAL CORRELATION REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.218 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 10.60 REMARK 3 NUMBER OF PARTICLES : 14028 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD REMARK 3 -3097. (DEPOSITION ID: 13604). REMARK 4 REMARK 4 5A8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290064376. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : A PARTICLE OF SAFFOLD VIRUS-3 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : CRYOGEN - LIQUID ETHANE, REMARK 245 VITROBOT MARK IV, BLOT FOR 2 REMARK 245 SECONDS REMARK 245 SAMPLE BUFFER : 20MM HEPES, 150MM NACL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 03-SEP-14 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : FEI EAGLE (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 2330.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3950.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 20.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 55000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.951057 -0.000001 -0.00019 REMARK 350 BIOMT2 2 0.951057 0.309017 0.000000 -0.00003 REMARK 350 BIOMT3 2 0.000000 -0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.587785 -0.000001 -0.00021 REMARK 350 BIOMT2 3 0.587785 -0.809017 -0.000001 -0.00022 REMARK 350 BIOMT3 3 0.000000 -0.000001 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.587785 0.000000 -0.00004 REMARK 350 BIOMT2 4 -0.587785 -0.809017 -0.000001 -0.00030 REMARK 350 BIOMT3 4 -0.000001 -0.000001 1.000000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.951057 0.000000 0.00009 REMARK 350 BIOMT2 5 -0.951057 0.309017 -0.000001 -0.00017 REMARK 350 BIOMT3 5 -0.000001 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 -0.947214 -0.162460 0.276393 -0.00016 REMARK 350 BIOMT2 6 -0.162460 -0.499999 -0.850651 -0.00023 REMARK 350 BIOMT3 6 0.276393 -0.850651 0.447213 -0.00011 REMARK 350 BIOMT1 7 -0.447214 0.850651 0.276394 0.00002 REMARK 350 BIOMT2 7 -0.525731 0.000001 -0.850651 -0.00018 REMARK 350 BIOMT3 7 -0.723607 -0.525731 0.447213 -0.00013 REMARK 350 BIOMT1 8 0.670820 0.688191 0.276394 0.00008 REMARK 350 BIOMT2 8 -0.162459 0.500000 -0.850651 -0.00008 REMARK 350 BIOMT3 8 -0.723607 0.525731 0.447213 0.00003 REMARK 350 BIOMT1 9 0.861803 -0.425325 0.276394 -0.00007 REMARK 350 BIOMT2 9 0.425326 0.309017 -0.850651 -0.00007 REMARK 350 BIOMT3 9 0.276393 0.850651 0.447214 0.00014 REMARK 350 BIOMT1 10 -0.138197 -0.951057 0.276393 -0.00022 REMARK 350 BIOMT2 10 0.425325 -0.309017 -0.850651 -0.00016 REMARK 350 BIOMT3 10 0.894427 0.000000 0.447214 0.00006 REMARK 350 BIOMT1 11 -0.861803 -0.425326 -0.276394 -0.00019 REMARK 350 BIOMT2 11 -0.425326 0.309016 0.850651 -0.00013 REMARK 350 BIOMT3 11 -0.276394 0.850651 -0.447213 0.00010 REMARK 350 BIOMT1 12 -0.670821 0.688190 -0.276393 -0.00002 REMARK 350 BIOMT2 12 0.162459 0.500000 0.850651 -0.00006 REMARK 350 BIOMT3 12 0.723607 0.525732 -0.447213 0.00012 REMARK 350 BIOMT1 13 0.447213 0.850651 -0.276393 0.00008 REMARK 350 BIOMT2 13 0.525731 0.000001 0.850651 -0.00011 REMARK 350 BIOMT3 13 0.723607 -0.525730 -0.447213 -0.00003 REMARK 350 BIOMT1 14 0.947214 -0.162459 -0.276393 -0.00003 REMARK 350 BIOMT2 14 0.162460 -0.500000 0.850651 -0.00020 REMARK 350 BIOMT3 14 -0.276392 -0.850651 -0.447214 -0.00014 REMARK 350 BIOMT1 15 0.138198 -0.951056 -0.276394 -0.00020 REMARK 350 BIOMT2 15 -0.425325 -0.309018 0.850651 -0.00022 REMARK 350 BIOMT3 15 -0.894427 -0.000001 -0.447214 -0.00006 REMARK 350 BIOMT1 16 0.809016 0.587786 0.000001 0.00007 REMARK 350 BIOMT2 16 0.587786 -0.809016 0.000000 -0.00022 REMARK 350 BIOMT3 16 0.000001 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.809018 -0.587784 0.000000 -0.00010 REMARK 350 BIOMT2 17 -0.587784 -0.809018 0.000000 -0.00030 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 18 -0.309016 -0.951057 0.000000 -0.00023 REMARK 350 BIOMT2 18 -0.951057 0.309016 0.000000 -0.00017 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 19 -1.000000 -0.000001 0.000000 -0.00014 REMARK 350 BIOMT2 19 -0.000001 1.000000 0.000001 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000001 -1.000000 0.00000 REMARK 350 BIOMT1 20 -0.309018 0.951056 0.000001 0.00005 REMARK 350 BIOMT2 20 0.951056 0.309018 0.000001 -0.00003 REMARK 350 BIOMT3 20 0.000001 0.000001 -1.000000 0.00000 REMARK 350 BIOMT1 21 -0.138197 -0.425326 0.894427 -0.00014 REMARK 350 BIOMT2 21 0.951056 -0.309017 0.000000 -0.00012 REMARK 350 BIOMT3 21 0.276393 0.850651 0.447214 0.00014 REMARK 350 BIOMT1 22 -0.447214 0.000000 0.894427 -0.00010 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 -0.00029 REMARK 350 BIOMT3 22 0.894427 0.000000 0.447214 0.00006 REMARK 350 BIOMT1 23 -0.138197 0.425325 0.894427 -0.00002 REMARK 350 BIOMT2 23 -0.951057 -0.309017 0.000000 -0.00025 REMARK 350 BIOMT3 23 0.276393 -0.850651 0.447214 -0.00011 REMARK 350 BIOMT1 24 0.361804 0.262865 0.894427 0.00000 REMARK 350 BIOMT2 24 -0.587785 0.809017 0.000000 -0.00007 REMARK 350 BIOMT3 24 -0.723607 -0.525731 0.447213 -0.00013 REMARK 350 BIOMT1 25 0.361803 -0.262866 0.894427 -0.00008 REMARK 350 BIOMT2 25 0.587785 0.809017 0.000001 0.00001 REMARK 350 BIOMT3 25 -0.723607 0.525731 0.447214 0.00003 REMARK 350 BIOMT1 26 0.447214 -0.525731 0.723607 -0.00011 REMARK 350 BIOMT2 26 -0.850651 -0.000001 0.525731 -0.00020 REMARK 350 BIOMT3 26 -0.276393 -0.850651 -0.447214 -0.00014 REMARK 350 BIOMT1 27 -0.361803 -0.587786 0.723606 -0.00018 REMARK 350 BIOMT2 27 -0.262866 0.809016 0.525732 -0.00004 REMARK 350 BIOMT3 27 -0.894427 0.000000 -0.447213 -0.00006 REMARK 350 BIOMT1 28 -0.670821 0.162459 0.723607 -0.00009 REMARK 350 BIOMT2 28 0.688190 0.500000 0.525732 -0.00002 REMARK 350 BIOMT3 28 -0.276393 0.850651 -0.447213 0.00010 REMARK 350 BIOMT1 29 -0.052787 0.688191 0.723607 0.00003 REMARK 350 BIOMT2 29 0.688191 -0.500000 0.525732 -0.00017 REMARK 350 BIOMT3 29 0.723607 0.525732 -0.447213 0.00012 REMARK 350 BIOMT1 30 0.638196 0.262866 0.723607 0.00001 REMARK 350 BIOMT2 30 -0.262865 -0.809017 0.525731 -0.00028 REMARK 350 BIOMT3 30 0.723607 -0.525731 -0.447213 -0.00003 REMARK 350 BIOMT1 31 0.052787 0.688191 -0.723606 0.00003 REMARK 350 BIOMT2 31 -0.688190 -0.500000 -0.525732 -0.00027 REMARK 350 BIOMT3 31 -0.723607 0.525731 0.447213 0.00003 REMARK 350 BIOMT1 32 0.670821 0.162460 -0.723606 0.00000 REMARK 350 BIOMT2 32 -0.688191 0.500000 -0.525732 -0.00012 REMARK 350 BIOMT3 32 0.276393 0.850651 0.447214 0.00014 REMARK 350 BIOMT1 33 0.361804 -0.587785 -0.723607 -0.00013 REMARK 350 BIOMT2 33 0.262865 0.809017 -0.525731 -0.00001 REMARK 350 BIOMT3 33 0.894427 0.000000 0.447213 0.00006 REMARK 350 BIOMT1 34 -0.447214 -0.525731 -0.723607 -0.00018 REMARK 350 BIOMT2 34 0.850651 0.000001 -0.525731 -0.00009 REMARK 350 BIOMT3 34 0.276394 -0.850651 0.447213 -0.00011 REMARK 350 BIOMT1 35 -0.638196 0.262866 -0.723607 -0.00008 REMARK 350 BIOMT2 35 0.262866 -0.809016 -0.525732 -0.00024 REMARK 350 BIOMT3 35 -0.723607 -0.525732 0.447213 -0.00013 REMARK 350 BIOMT1 36 -0.361804 0.262865 -0.894427 -0.00006 REMARK 350 BIOMT2 36 0.587784 0.809018 0.000000 0.00001 REMARK 350 BIOMT3 36 0.723607 -0.525730 -0.447214 -0.00003 REMARK 350 BIOMT1 37 0.138196 0.425326 -0.894427 0.00000 REMARK 350 BIOMT2 37 0.951057 -0.309016 0.000000 -0.00012 REMARK 350 BIOMT3 37 -0.276392 -0.850651 -0.447214 -0.00014 REMARK 350 BIOMT1 38 0.447214 0.000001 -0.894427 -0.00004 REMARK 350 BIOMT2 38 0.000001 -1.000000 -0.000001 -0.00029 REMARK 350 BIOMT3 38 -0.894427 -0.000001 -0.447214 -0.00006 REMARK 350 BIOMT1 39 0.138198 -0.425325 -0.894427 -0.00012 REMARK 350 BIOMT2 39 -0.951056 -0.309018 -0.000001 -0.00025 REMARK 350 BIOMT3 39 -0.276394 0.850651 -0.447214 0.00010 REMARK 350 BIOMT1 40 -0.361803 -0.262866 -0.894427 -0.00013 REMARK 350 BIOMT2 40 -0.587786 0.809016 0.000000 -0.00007 REMARK 350 BIOMT3 40 0.723606 0.525732 -0.447213 0.00012 REMARK 350 BIOMT1 41 -0.138197 0.951056 0.276393 0.00006 REMARK 350 BIOMT2 41 -0.425326 -0.309017 0.850651 -0.00022 REMARK 350 BIOMT3 41 0.894427 0.000000 0.447214 0.00006 REMARK 350 BIOMT1 42 0.861803 0.425326 0.276393 0.00005 REMARK 350 BIOMT2 42 -0.425325 0.309017 0.850651 -0.00013 REMARK 350 BIOMT3 42 0.276394 -0.850651 0.447214 -0.00011 REMARK 350 BIOMT1 43 0.670821 -0.688191 0.276393 -0.00012 REMARK 350 BIOMT2 43 0.162460 0.500000 0.850651 -0.00006 REMARK 350 BIOMT3 43 -0.723606 -0.525732 0.447214 -0.00013 REMARK 350 BIOMT1 44 -0.447213 -0.850651 0.276392 -0.00022 REMARK 350 BIOMT2 44 0.525731 -0.000001 0.850651 -0.00011 REMARK 350 BIOMT3 44 -0.723607 0.525730 0.447214 0.00003 REMARK 350 BIOMT1 45 -0.947214 0.162459 0.276393 -0.00011 REMARK 350 BIOMT2 45 0.162459 -0.500000 0.850651 -0.00020 REMARK 350 BIOMT3 45 0.276393 0.850651 0.447214 0.00014 REMARK 350 BIOMT1 46 0.052787 -0.688190 -0.723607 -0.00017 REMARK 350 BIOMT2 46 0.688191 -0.500000 0.525731 -0.00017 REMARK 350 BIOMT3 46 -0.723606 -0.525732 0.447213 -0.00013 REMARK 350 BIOMT1 47 -0.638196 -0.262865 -0.723607 -0.00015 REMARK 350 BIOMT2 47 -0.262865 -0.809018 0.525730 -0.00028 REMARK 350 BIOMT3 47 -0.723607 0.525730 0.447214 0.00003 REMARK 350 BIOMT1 48 -0.447213 0.525731 -0.723607 -0.00002 REMARK 350 BIOMT2 48 -0.850651 -0.000001 0.525730 -0.00020 REMARK 350 BIOMT3 48 0.276392 0.850651 0.447214 0.00014 REMARK 350 BIOMT1 49 0.361803 0.587785 -0.723607 0.00004 REMARK 350 BIOMT2 49 -0.262866 0.809017 0.525731 -0.00004 REMARK 350 BIOMT3 49 0.894427 0.000001 0.447214 0.00006 REMARK 350 BIOMT1 50 0.670820 -0.162459 -0.723607 -0.00005 REMARK 350 BIOMT2 50 0.688191 0.500000 0.525731 -0.00002 REMARK 350 BIOMT3 50 0.276394 -0.850651 0.447213 -0.00011 REMARK 350 BIOMT1 51 -0.361804 0.587784 0.723607 0.00000 REMARK 350 BIOMT2 51 0.262865 0.809018 -0.525730 -0.00001 REMARK 350 BIOMT3 51 -0.894427 0.000000 -0.447214 -0.00006 REMARK 350 BIOMT1 52 0.447213 0.525731 0.723607 0.00004 REMARK 350 BIOMT2 52 0.850651 0.000001 -0.525730 -0.00009 REMARK 350 BIOMT3 52 -0.276393 0.850651 -0.447213 0.00010 REMARK 350 BIOMT1 53 0.638196 -0.262865 0.723607 -0.00006 REMARK 350 BIOMT2 53 0.262866 -0.809017 -0.525731 -0.00024 REMARK 350 BIOMT3 53 0.723607 0.525731 -0.447213 0.00012 REMARK 350 BIOMT1 54 -0.052786 -0.688191 0.723607 -0.00017 REMARK 350 BIOMT2 54 -0.688191 -0.500000 -0.525731 -0.00027 REMARK 350 BIOMT3 54 0.723607 -0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 55 -0.670820 -0.162460 0.723607 -0.00014 REMARK 350 BIOMT2 55 -0.688191 0.500000 -0.525731 -0.00012 REMARK 350 BIOMT3 55 -0.276393 -0.850651 -0.447214 -0.00014 REMARK 350 BIOMT1 56 0.447214 -0.850651 -0.276393 -0.00016 REMARK 350 BIOMT2 56 -0.525731 -0.000001 -0.850651 -0.00018 REMARK 350 BIOMT3 56 0.723607 0.525731 -0.447214 0.00012 REMARK 350 BIOMT1 57 -0.670820 -0.688191 -0.276393 -0.00021 REMARK 350 BIOMT2 57 -0.162460 0.500000 -0.850651 -0.00008 REMARK 350 BIOMT3 57 0.723607 -0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 58 -0.861804 0.425325 -0.276393 -0.00007 REMARK 350 BIOMT2 58 0.425325 0.309018 -0.850651 -0.00007 REMARK 350 BIOMT3 58 -0.276393 -0.850651 -0.447214 -0.00014 REMARK 350 BIOMT1 59 0.138196 0.951057 -0.276392 0.00008 REMARK 350 BIOMT2 59 0.425326 -0.309016 -0.850651 -0.00016 REMARK 350 BIOMT3 59 -0.894427 0.000000 -0.447214 -0.00006 REMARK 350 BIOMT1 60 0.947214 0.162460 -0.276392 0.00002 REMARK 350 BIOMT2 60 -0.162459 -0.500000 -0.850651 -0.00023 REMARK 350 BIOMT3 60 -0.276393 0.850651 -0.447214 0.00010 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 HIS B 207 NE2 GLN C 238 1.42 REMARK 500 N ALA B 119 O GLN C 120 1.69 REMARK 500 CG PRO B 203 OG SER C 240 1.79 REMARK 500 CG1 ILE A 257 CE2 TYR B 229 1.82 REMARK 500 CD PRO B 203 OG SER C 240 1.83 REMARK 500 CD2 LEU B 209 OG1 THR C 235 1.92 REMARK 500 CH2 TRP A 259 ND2 ASN B 92 1.95 REMARK 500 O ASN A 214 NH1 ARG C 146 2.01 REMARK 500 NE2 HIS B 207 NE2 GLN C 238 2.02 REMARK 500 CB ILE A 257 CZ TYR B 229 2.05 REMARK 500 CD PRO A 258 CD1 TYR B 229 2.05 REMARK 500 OH TYR A 124 CG GLU C 133 2.05 REMARK 500 CG1 ILE A 257 CD2 TYR B 229 2.07 REMARK 500 CA ILE A 257 OH TYR B 229 2.07 REMARK 500 NH2 ARG A 252 O HIS C 184 2.09 REMARK 500 CZ2 TRP A 259 ND2 ASN B 92 2.10 REMARK 500 CA ILE A 257 CZ TYR B 229 2.10 REMARK 500 CD1 ILE A 257 CE2 TYR B 229 2.15 REMARK 500 CD1 ILE A 257 CD2 TYR B 229 2.16 REMARK 500 N ILE A 257 OH TYR B 229 2.18 REMARK 500 CB ILE A 257 OH TYR B 229 2.18 REMARK 500 O THR B 116 CB ALA C 123 2.18 REMARK 500 O PHE A 256 OH TYR B 229 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 89 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 102 -67.59 -106.01 REMARK 500 THR A 103 -36.20 -36.44 REMARK 500 PRO A 121 43.42 -72.10 REMARK 500 CYS A 127 172.79 179.72 REMARK 500 SER A 142 86.49 -162.05 REMARK 500 ASN A 184 28.94 49.91 REMARK 500 VAL A 204 -74.94 -128.29 REMARK 500 CYS A 250 92.86 57.69 REMARK 500 ALA B 146 -166.42 -107.84 REMARK 500 MET B 222 88.76 69.00 REMARK 500 SER C 28 34.11 -147.41 REMARK 500 CYS C 116 110.44 -171.63 REMARK 500 ALA C 118 -113.52 -143.67 REMARK 500 THR C 202 -61.38 -103.70 REMARK 500 LYS C 257 58.99 38.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3097 RELATED DB: EMDB DBREF 5A8F A 34 260 UNP C0MHL9 C0MHL9_9PICO 680 898 DBREF 5A8F B 44 232 UNP E3TMG9 E3TMG9_9PICO 458 646 DBREF 5A8F C 11 268 UNP C0MHL9 C0MHL9_9PICO 154 411 SEQADV 5A8F PHE A 36 UNP C0MHL9 VAL 682 CONFLICT SEQRES 1 A 219 SER PHE PHE TYR ASP ARG SER THR LEU SER SER VAL LEU SEQRES 2 A 219 GLN SER THR SER ASP VAL SER SER LYS PHE THR PRO SER SEQRES 3 A 219 THR ALA LYS ASN LEU GLN ASN SER ILE LEU LEU THR PRO SEQRES 4 A 219 LEU PRO SER ASP ILE VAL ASN ASN SER VAL LEU PRO GLU SEQRES 5 A 219 GLN GLU ARG TRP ILE SER PHE ALA SER PRO THR THR GLN SEQRES 6 A 219 LYS PRO PRO TYR LYS THR LYS GLN ASP TRP ASN PHE ILE SEQRES 7 A 219 MET PHE SER PRO PHE THR TYR TYR LYS CYS ASP LEU GLU SEQRES 8 A 219 VAL THR LEU SER LYS ASN ASP ARG GLU THR ILE SER SER SEQRES 9 A 219 VAL VAL ARG TYR VAL PRO CYS GLY ALA PRO SER ASP LEU SEQRES 10 A 219 SER ASP GLN THR MET PRO GLN THR PRO SER LEU ALA ASP SEQRES 11 A 219 THR ARG ASP PRO HIS MET TRP VAL VAL GLY GLN GLY THR SEQRES 12 A 219 THR ASN GLN ILE SER PHE VAL ILE PRO TYR THR SER PRO SEQRES 13 A 219 LEU SER VAL LEU PRO SER VAL TRP PHE ASN GLY PHE SER SEQRES 14 A 219 ASN PHE ASP ASN SER SER ARG PHE GLY VAL ALA PRO ASN SEQRES 15 A 219 ALA ASP PHE GLY ARG LEU LEU LEU GLN GLY GLN GLY THR SEQRES 16 A 219 PHE SER VAL HIS TYR ARG TYR LYS LYS MET ARG VAL PHE SEQRES 17 A 219 CYS PRO ARG PRO THR VAL PHE ILE PRO TRP PRO SEQRES 1 B 189 LEU LEU SER LEU CYS LYS ILE PRO THR PHE LEU GLY ASN SEQRES 2 B 189 LEU ASP SER ASN LYS LYS ARG ILE PRO TYR PHE SER ALA SEQRES 3 B 189 THR ASN SER THR PRO ALA THR PRO LEU VAL THR TYR GLN SEQRES 4 B 189 VAL THR LEU SER CYS SER CYS MET ALA ASN SER MET LEU SEQRES 5 B 189 ALA ALA VAL ALA ARG ASN PHE ASN GLN TYR ARG GLY SER SEQRES 6 B 189 LEU ASN TYR LEU PHE VAL PHE THR GLY SER ALA MET THR SEQRES 7 B 189 LYS GLY LYS PHE LEU ILE SER TYR THR PRO PRO GLY ALA SEQRES 8 B 189 GLY GLU PRO LYS THR LEU ASP GLN ALA MET GLN ALA THR SEQRES 9 B 189 TYR ALA ILE TRP ASP LEU GLY LEU ASN SER SER TYR ASN SEQRES 10 B 189 PHE THR VAL PRO PHE ILE SER PRO THR HIS TYR ARG GLN SEQRES 11 B 189 THR SER TYR ASN THR PRO THR ILE THR SER VAL ASP GLY SEQRES 12 B 189 TRP LEU THR VAL TRP GLN LEU THR PRO LEU THR TYR PRO SEQRES 13 B 189 LEU GLY VAL PRO ASN ASP SER HIS ILE LEU THR LEU VAL SEQRES 14 B 189 SER GLY GLY ASP ASP PHE THR LEU ARG MET PRO VAL THR SEQRES 15 B 189 PHE THR LYS TYR VAL PRO GLN SEQRES 1 C 258 SER ASP ARG VAL SER SER ASP THR ALA GLY ASN THR ALA SEQRES 2 C 258 THR ASN THR GLN SER THR VAL GLY ARG LEU PHE GLY PHE SEQRES 3 C 258 GLY GLN ARG HIS LYS GLY LYS HIS PRO ALA SER CYS ALA SEQRES 4 C 258 ASP THR ALA THR ASP LYS VAL LEU ALA ALA GLU ARG TYR SEQRES 5 C 258 TYR THR ILE LYS LEU ALA SER TRP THR LYS THR GLN GLU SEQRES 6 C 258 SER PHE ASP HIS ILE ARG VAL PRO LEU PRO HIS ALA LEU SEQRES 7 C 258 ALA GLY GLU ASN GLY GLY VAL PHE SER SER THR LEU ARG SEQRES 8 C 258 ARG HIS TYR LEU CYS LYS CYS GLY TRP ARG ILE GLN VAL SEQRES 9 C 258 GLN CYS ASN ALA SER GLN PHE HIS ALA GLY SER LEU LEU SEQRES 10 C 258 VAL PHE MET ALA PRO GLU PHE ASP THR SER ASN HIS SER SEQRES 11 C 258 THR GLU VAL GLU PRO ARG ALA ASP THR ALA PHE LYS VAL SEQRES 12 C 258 ASP ALA ASN TRP GLN LYS HIS ALA GLN ILE LEU THR GLY SEQRES 13 C 258 HIS ALA TYR VAL ASN THR THR THR LYS VAL ASN VAL PRO SEQRES 14 C 258 LEU ALA LEU ASN HIS GLN ASN PHE TRP GLN TRP THR THR SEQRES 15 C 258 TYR PRO HIS GLN ILE LEU ASN LEU ARG THR ASN THR THR SEQRES 16 C 258 CYS ASP LEU GLU VAL PRO TYR VAL ASN VAL CYS PRO THR SEQRES 17 C 258 SER SER TRP THR GLN HIS ALA ASN TRP THR LEU VAL ILE SEQRES 18 C 258 ALA VAL LEU THR PRO LEU GLN TYR SER GLN GLY SER ALA SEQRES 19 C 258 THR THR ILE GLU ILE THR ALA SER ILE GLN PRO VAL LYS SEQRES 20 C 258 PRO VAL PHE ASN GLY LEU ARG HIS THR VAL VAL HELIX 1 1 ASP A 113 PHE A 119 1 7 HELIX 2 2 PRO A 165 ASP A 169 5 5 HELIX 3 3 LEU B 44 LYS B 49 1 6 HELIX 4 4 CYS B 87 ALA B 91 5 5 HELIX 5 5 SER B 93 ARG B 100 1 8 HELIX 6 6 THR B 139 MET B 144 1 6 HELIX 7 7 PHE C 36 GLN C 38 5 3 HELIX 8 8 PRO C 85 ALA C 89 5 5 HELIX 9 9 GLY C 90 ASN C 92 5 3 HELIX 10 10 GLY C 93 ARG C 101 1 9 HELIX 11 11 HIS C 160 LEU C 164 5 5 HELIX 12 12 THR C 173 VAL C 178 5 6 HELIX 13 13 ASN C 186 TYR C 193 5 8 HELIX 14 14 SER C 220 GLN C 223 5 4 SHEET 1 AA 4 THR A 41 SER A 48 0 SHEET 2 AA 4 GLY A 235 PRO A 251 -1 O GLY A 235 N SER A 48 SHEET 3 AA 4 PHE A 122 LYS A 135 -1 N THR A 123 O PHE A 249 SHEET 4 AA 4 GLN A 185 ILE A 192 -1 O ILE A 186 N LEU A 133 SHEET 1 AB 4 THR A 41 SER A 48 0 SHEET 2 AB 4 GLY A 235 PRO A 251 -1 O GLY A 235 N SER A 48 SHEET 3 AB 4 PHE A 122 LYS A 135 -1 N THR A 123 O PHE A 249 SHEET 4 AB 4 LEU A 201 PRO A 202 -1 O LEU A 201 N TYR A 125 SHEET 1 AC 2 GLN A 185 ILE A 192 0 SHEET 2 AC 2 PHE A 122 LYS A 135 -1 O LEU A 129 N ILE A 192 SHEET 1 AD 2 THR A 60 ALA A 61 0 SHEET 2 AD 2 LEU A 64 GLN A 65 -1 O LEU A 64 N ALA A 61 SHEET 1 AE 4 SER A 67 LEU A 69 0 SHEET 2 AE 4 ARG A 228 GLN A 232 -1 O LEU A 229 N ILE A 68 SHEET 3 AE 4 SER A 142 VAL A 148 -1 O VAL A 144 N GLN A 232 SHEET 4 AE 4 HIS A 174 VAL A 178 -1 O MET A 175 N VAL A 145 SHEET 1 AF 2 SER A 75 ASP A 76 0 SHEET 2 AF 2 GLU A 91 GLN A 92 -1 O GLU A 91 N ASP A 76 SHEET 1 BA 2 THR B 52 PHE B 53 0 SHEET 2 BA 2 SER B 206 GLY B 214 -1 O VAL B 212 N THR B 52 SHEET 1 BB 2 TYR B 66 ALA B 69 0 SHEET 2 BB 2 SER B 206 GLY B 214 1 O SER B 206 N ALA B 69 SHEET 1 BC 4 SER B 158 VAL B 163 0 SHEET 2 BC 4 LEU B 109 PHE B 115 -1 O LEU B 109 N VAL B 163 SHEET 3 BC 4 SER B 206 GLY B 214 -1 O LEU B 209 N VAL B 114 SHEET 4 BC 4 TYR B 66 ALA B 69 1 O PHE B 67 N ILE B 208 SHEET 1 BD 4 SER B 158 VAL B 163 0 SHEET 2 BD 4 LEU B 109 PHE B 115 -1 O LEU B 109 N VAL B 163 SHEET 3 BD 4 SER B 206 GLY B 214 -1 O LEU B 209 N VAL B 114 SHEET 4 BD 4 THR B 52 PHE B 53 -1 O THR B 52 N VAL B 212 SHEET 1 BE 2 ASN B 56 LEU B 57 0 SHEET 2 BE 2 ARG B 63 ILE B 64 -1 O ILE B 64 N ASN B 56 SHEET 1 BF 4 VAL B 79 GLN B 82 0 SHEET 2 BF 4 TRP B 187 THR B 197 -1 O LEU B 188 N TYR B 81 SHEET 3 BF 4 LYS B 122 THR B 130 -1 O LYS B 122 N THR B 197 SHEET 4 BF 4 THR B 147 ASP B 152 -1 O THR B 147 N TYR B 129 SHEET 1 BG 3 ARG B 172 GLN B 173 0 SHEET 2 BG 3 PHE B 102 ARG B 106 -1 O TYR B 105 N ARG B 172 SHEET 3 BG 3 THR B 219 PRO B 223 -1 O THR B 219 N ARG B 106 SHEET 1 CA 2 SER C 15 ALA C 19 0 SHEET 2 CA 2 THR C 22 THR C 26 -1 O THR C 22 N ALA C 19 SHEET 1 CB 5 ARG C 32 PHE C 34 0 SHEET 2 CB 5 THR C 205 VAL C 210 1 O ASP C 207 N LEU C 33 SHEET 3 CB 5 HIS C 103 GLN C 115 -1 O TRP C 110 N VAL C 210 SHEET 4 CB 5 ILE C 247 LEU C 263 -1 O THR C 250 N GLN C 115 SHEET 5 CB 5 TYR C 63 TRP C 70 -1 O TYR C 63 N ILE C 253 SHEET 1 CC 4 HIS C 79 LEU C 84 0 SHEET 2 CC 4 TRP C 227 GLN C 238 -1 O TRP C 227 N LEU C 84 SHEET 3 CC 4 ALA C 123 PRO C 132 -1 O ALA C 123 N GLN C 238 SHEET 4 CC 4 HIS C 195 ASN C 199 -1 O GLN C 196 N VAL C 128 SSBOND 1 CYS B 87 CYS B 89 1555 1555 2.05 CISPEP 1 PRO A 106 PRO A 107 0 0.20 CISPEP 2 LEU C 84 PRO C 85 0 0.23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000