HEADER VIRAL PROTEIN 17-JUL-15 5A98 TITLE CRYSTAL STRUCTURE OF TRICHOPLUSIA NI CPV15 POLYHEDRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOPLUSIA NI CYPOVIRUS 15; SOURCE 3 ORGANISM_TAXID: 134606; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS VIRAL PROTEIN, INSECT VIRUS OCCLUSION BODY, MICROCRYSTAL EXPDTA X-RAY DIFFRACTION AUTHOR X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART REVDAT 2 14-OCT-15 5A98 1 JRNL REVDAT 1 02-SEP-15 5A98 0 JRNL AUTH X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART JRNL TITL POLYHEDRA STRUCTURES AND THE EVOLUTION OF THE INSECT JRNL TITL 2 VIRUSES. JRNL REF J.STRUCT.BIOL. V. 192 88 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 26291392 JRNL DOI 10.1016/J.JSB.2015.08.009 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.816 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.005 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.33 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.32 REMARK 3 NUMBER OF REFLECTIONS : 16408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1646 REMARK 3 R VALUE (WORKING SET) : 0.1617 REMARK 3 FREE R VALUE : 0.2199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0159 - 3.2995 1.00 2697 135 0.1268 0.1511 REMARK 3 2 3.2995 - 2.6190 1.00 2621 132 0.1404 0.1930 REMARK 3 3 2.6190 - 2.2880 1.00 2615 126 0.1616 0.2424 REMARK 3 4 2.2880 - 2.0788 1.00 2574 142 0.1751 0.2512 REMARK 3 5 2.0788 - 1.9298 1.00 2604 142 0.2159 0.3094 REMARK 3 6 1.9298 - 1.8160 0.97 2467 153 0.2920 0.3727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.400 REMARK 3 B_SOL : 57.085 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.55 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.0000 REMARK 3 B22 (A**2) : 0.0000 REMARK 3 B33 (A**2) : 0.0000 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2071 REMARK 3 ANGLE : 1.276 2813 REMARK 3 CHIRALITY : 0.078 283 REMARK 3 PLANARITY : 0.006 360 REMARK 3 DIHEDRAL : 16.986 782 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 66-78 ARE DISORDERED. REMARK 4 REMARK 4 5A98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-15. REMARK 100 THE PDBE ID CODE IS EBI-64411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 40 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16418 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.82 REMARK 200 RESOLUTION RANGE LOW (A) : 51.40 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.8 REMARK 200 R MERGE (I) : 0.47 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.5 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 21.7 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.44500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.44500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.44500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.44500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.44500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.44500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.44500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.44500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.44500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.44500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.44500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.44500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.44500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.44500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.44500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.44500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.44500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.44500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.44500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.44500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.44500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.44500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.44500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.44500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.44500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.44500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2174 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 66 REMARK 465 TYR A 67 REMARK 465 ARG A 68 REMARK 465 GLU A 69 REMARK 465 HIS A 70 REMARK 465 TYR A 71 REMARK 465 LEU A 72 REMARK 465 SER A 73 REMARK 465 ASN A 74 REMARK 465 SER A 75 REMARK 465 GLY A 76 REMARK 465 PRO A 77 REMARK 465 GLY A 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 10 O HOH A 2005 2.19 REMARK 500 ND1 HIS A 99 O HOH A 2066 2.17 REMARK 500 OD2 ASP A 166 O3' ATP A 252 2.14 REMARK 500 ND1 HIS A 169 O HOH A 2072 2.20 REMARK 500 OG1 THR A 179 O HOH A 2125 2.03 REMARK 500 O HOH A 2067 O HOH A 2068 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2004 O HOH A 2009 4565 2.01 REMARK 500 O HOH A 2163 O HOH A 2169 19554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 59.39 -102.41 REMARK 500 TYR A 4 67.94 -154.90 REMARK 500 ARG A 64 -82.11 -80.45 REMARK 500 ASP A 149 -71.49 -154.00 REMARK 500 SER A 159 -140.05 -97.16 REMARK 500 THR A 179 -89.84 -111.31 REMARK 500 PHE A 232 -62.01 -137.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2176 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 250 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 249 O1A REMARK 620 2 HOH A2006 O 173.2 REMARK 620 3 HOH A2165 O 88.2 90.4 REMARK 620 4 HOH A2166 O 91.0 95.7 96.8 REMARK 620 5 ATP A 249 O2G 90.5 82.7 81.8 177.9 REMARK 620 6 ATP A 249 O2B 90.7 88.9 163.7 99.5 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 251 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 252 O1A REMARK 620 2 HOH A2013 O 67.0 REMARK 620 3 HOH A2014 O 83.6 89.1 REMARK 620 4 HOH A2116 O 165.7 104.0 85.2 REMARK 620 5 ATP A 252 O3G 66.1 132.3 77.6 119.9 REMARK 620 6 HOH A2173 O 86.5 88.1 170.0 104.9 97.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 253 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2170 O REMARK 620 2 HOH A2106 O 100.2 REMARK 620 3 HOH A2005 O 91.3 98.3 REMARK 620 4 HOH A2012 O 153.8 102.8 73.2 REMARK 620 5 HOH A2157 O 74.7 163.4 66.4 79.7 REMARK 620 6 HOH A2162 O 85.9 121.9 139.6 92.4 74.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 253 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A8S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA REMARK 900 TYPE 1 REMARK 900 RELATED ID: 5A8T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA REMARK 900 TYPE 2 REMARK 900 RELATED ID: 5A8U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA REMARK 900 RELATED ID: 5A8V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA REMARK 900 WITH SEMET SUBSTITUTION REMARK 900 RELATED ID: 5A96 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LYMANTRIA DISPAR CPV14 POLYHEDRA REMARK 900 RELATED ID: 5A99 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV19 POLYHEDRA REMARK 900 RELATED ID: 5A9A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SIMULIUM UBIQUITUM CPV20 POLYHEDRA REMARK 900 RELATED ID: 5A9B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOMBYX MORI CPV1 POLYHEDRA BASE REMARK 900 DOMAIN DELETED MUTANT REMARK 900 RELATED ID: 5A9C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA REMARK 900 BASE DOMAIN DELETED MUTANT REMARK 900 RELATED ID: 5A9P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV18 POLYHEDRA DBREF 5A98 A 1 248 UNP Q9ELS6 Q9ELS6_9REOV 1 248 SEQRES 1 A 248 MET GLU ASP TYR THR LEU ARG GLU ARG GLU GLN GLU ILE SEQRES 2 A 248 TYR ASN ARG GLN VAL ILE LYS ARG PRO PHE ASP PRO ASP SEQRES 3 A 248 SER TYR LEU THR ALA ASP LEU HIS LEU TYR LEU LYS ASN SEQRES 4 A 248 GLY LYS THR LEU THR ILE HIS ILE GLU ARG ASN LEU PHE SEQRES 5 A 248 PHE SER HIS GLU PHE THR TRP GLU GLU ILE CYS ARG GLY SEQRES 6 A 248 ALA TYR ARG GLU HIS TYR LEU SER ASN SER GLY PRO GLY SEQRES 7 A 248 LYS CYS ASP THR GLN GLU TYR ILE ASP GLY LEU VAL ALA SEQRES 8 A 248 ASP ASN GLY GLY ARG SER THR HIS ASN SER SER TYR LEU SEQRES 9 A 248 GLU PRO VAL ALA PHE GLN LEU THR LEU LEU GLY ASN PHE SEQRES 10 A 248 ASP LEU GLY SER ILE HIS LEU ARG ILE GLY ASP TYR LEU SEQRES 11 A 248 GLY PHE ARG ASP GLY GLN ARG PHE PRO CYS LYS GLU THR SEQRES 12 A 248 ILE HIS GLY ARG ARG ASP THR ILE GLY PRO PHE MET GLN SEQRES 13 A 248 GLY MET SER GLY LYS TRP ALA LYS GLU ASP TYR ILE HIS SEQRES 14 A 248 THR TYR SER GLY ARG PHE ASP CYS LYS THR SER ARG HIS SEQRES 15 A 248 PRO SER ILE PHE LEU ALA PHE MET ARG ALA ASN GLN ASP SEQRES 16 A 248 GLY HIS SER SER PHE ALA PRO GLU ASN MET ARG ASN ALA SEQRES 17 A 248 LEU LEU TYR SER GLY ASP LYS SER PRO ARG TYR ILE LEU SEQRES 18 A 248 MET ASP ASN GLU HIS THR LEU ILE ASN ASN PHE ILE ILE SEQRES 19 A 248 PRO ARG CYS LEU PRO TYR ARG ASP GLN TYR GLY LYS ASP SEQRES 20 A 248 TYR HET ATP A 249 43 HET MG A 250 1 HET MG A 251 1 HET ATP A 252 43 HET MG A 253 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ATP 2(C10 H16 N5 O13 P3) FORMUL 3 MG 3(MG 2+) FORMUL 7 HOH *176(H2 O) HELIX 1 1 THR A 5 LYS A 20 1 16 HELIX 2 2 ARG A 21 ASP A 24 5 4 HELIX 3 3 THR A 58 ARG A 64 1 7 HELIX 4 4 LYS A 79 ALA A 91 1 13 HELIX 5 5 ASP A 118 ILE A 122 5 5 HELIX 6 6 ILE A 151 MET A 155 5 5 HELIX 7 7 ASN A 204 TYR A 211 1 8 HELIX 8 8 ASN A 224 PHE A 232 1 9 SHEET 1 AA 5 ILE A 168 ARG A 174 0 SHEET 2 AA 5 ALA A 108 LEU A 114 -1 O PHE A 109 N GLY A 173 SHEET 3 AA 5 LEU A 29 TYR A 36 -1 O THR A 30 N LEU A 114 SHEET 4 AA 5 THR A 42 ARG A 49 -1 O LEU A 43 N LEU A 35 SHEET 5 AA 5 ARG A 218 MET A 222 -1 O ARG A 218 N HIS A 46 SHEET 1 AB 3 PHE A 52 PHE A 57 0 SHEET 2 AB 3 SER A 184 MET A 190 -1 O ILE A 185 N PHE A 57 SHEET 3 AB 3 HIS A 123 GLY A 127 -1 O HIS A 123 N ALA A 188 LINK O1A ATP A 249 MG MG A 250 1555 1555 2.23 LINK O2B ATP A 249 MG MG A 250 1555 1555 2.15 LINK O2G ATP A 249 MG MG A 250 1555 1555 2.32 LINK MG MG A 250 O HOH A2006 1555 1555 2.24 LINK MG MG A 250 O HOH A2165 1555 1555 2.24 LINK MG MG A 250 O HOH A2166 1555 1555 2.16 LINK MG MG A 251 O3G ATP A 252 1555 1555 2.18 LINK MG MG A 251 O1A ATP A 252 1555 1555 2.51 LINK MG MG A 251 O HOH A2013 1555 1555 2.32 LINK MG MG A 251 O HOH A2014 1555 1555 2.51 LINK MG MG A 251 O HOH A2116 1555 1555 2.30 LINK MG MG A 251 O HOH A2173 1555 1555 2.57 LINK MG MG A 253 O HOH A2106 1555 24554 2.53 LINK MG MG A 253 O HOH A2005 1555 4565 2.46 LINK MG MG A 253 O HOH A2012 1555 1555 2.35 LINK MG MG A 253 O HOH A2157 1555 22555 2.37 LINK MG MG A 253 O HOH A2162 1555 22555 2.50 LINK MG MG A 253 O HOH A2170 1555 1555 2.27 CISPEP 1 ASP A 214 LYS A 215 0 2.36 SITE 1 AC1 24 TYR A 14 ARG A 21 GLN A 136 LYS A 141 SITE 2 AC1 24 GLY A 157 MET A 158 SER A 159 LYS A 164 SITE 3 AC1 24 GLU A 165 ASP A 166 LYS A 246 MG A 250 SITE 4 AC1 24 HOH A2005 HOH A2006 HOH A2109 HOH A2113 SITE 5 AC1 24 HOH A2117 HOH A2162 HOH A2165 HOH A2168 SITE 6 AC1 24 HOH A2169 HOH A2170 HOH A2171 HOH A2172 SITE 1 AC2 4 ATP A 249 HOH A2006 HOH A2165 HOH A2166 SITE 1 AC3 6 GLU A 165 ATP A 252 HOH A2013 HOH A2014 SITE 2 AC3 6 HOH A2116 HOH A2173 SITE 1 AC4 15 LYS A 20 PHE A 23 ARG A 147 ARG A 148 SITE 2 AC4 15 LYS A 164 ASP A 166 CYS A 177 LYS A 178 SITE 3 AC4 15 TYR A 244 MG A 251 HOH A2013 HOH A2014 SITE 4 AC4 15 HOH A2118 HOH A2173 HOH A2175 SITE 1 AC5 6 HOH A2005 HOH A2012 HOH A2106 HOH A2157 SITE 2 AC5 6 HOH A2162 HOH A2170 CRYST1 102.890 102.890 102.890 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009719 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009719 0.00000