HEADER TRANSPORT PROTEIN 21-JUL-15 5A9H TITLE CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF PEPT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUTE CARRIER FAMILY 15 MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 410-601; COMPND 5 SYNONYM: PEPT2, KIDNEY H(+)/PEPTIDE COTRANSPORTER, OLIGOPEPTIDE COMPND 6 TRANSPORTER, KIDNEY ISOFORM, PEPTIDE TRANSPORTER 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLOU3 KEYWDS TRANSPORT PROTEIN, PEPT2, EXTRACELLULAR DOMAIN, MFS EXPDTA X-RAY DIFFRACTION AUTHOR J.H.BEALE,S.NEWSTEAD REVDAT 3 08-MAY-19 5A9H 1 REMARK REVDAT 2 21-OCT-15 5A9H 1 JRNL REVDAT 1 09-SEP-15 5A9H 0 JRNL AUTH J.H.BEALE,J.L.PARKER,F.SAMSUDIN,A.L.BARRETT,A.SENAN, JRNL AUTH 2 L.E.BIRD,D.SCOTT,R.J.OWENS,M.S.P.SANSON,S.J.TUCKER, JRNL AUTH 3 D.MEREDITH,P.W.FOWLER,S.NEWSTEAD JRNL TITL CRYSTAL STRUCTURES OF THE EXTRACELLULAR DOMAIN FROM PEPT1 JRNL TITL 2 AND PEPT2 PROVIDE NOVEL INSIGHTS INTO MAMMALIAN PEPTIDE JRNL TITL 3 TRANSPORT JRNL REF STRUCTURE V. 23 1889 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26320580 JRNL DOI 10.1016/J.STR.2015.07.016 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 690 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2727 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2166 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2567 REMARK 3 BIN R VALUE (WORKING SET) : 0.2138 REMARK 3 BIN FREE R VALUE : 0.2638 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.87 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 160 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1481 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05790 REMARK 3 B22 (A**2) : 0.05790 REMARK 3 B33 (A**2) : -0.11590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.327 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.210 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.171 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.190 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.165 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1557 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2114 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 544 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 44 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 225 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1557 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 5 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 204 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1736 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.99 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.82 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|410 - A|504 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.7402 12.4284 10.8508 REMARK 3 T TENSOR REMARK 3 T11: -0.1236 T22: -0.0682 REMARK 3 T33: -0.0464 T12: 0.0005 REMARK 3 T13: -0.0716 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 5.0869 L22: 1.6220 REMARK 3 L33: 2.4666 L12: -0.8394 REMARK 3 L13: 0.9850 L23: -0.7160 REMARK 3 S TENSOR REMARK 3 S11: -0.0938 S12: -0.5317 S13: -0.0521 REMARK 3 S21: 0.0834 S22: -0.0404 S23: -0.0710 REMARK 3 S31: -0.3284 S32: -0.1656 S33: 0.1342 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|514 - A|601 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.1879 4.3201 18.1029 REMARK 3 T TENSOR REMARK 3 T11: -0.2160 T22: 0.0467 REMARK 3 T33: 0.0458 T12: -0.0045 REMARK 3 T13: -0.0696 T23: 0.1506 REMARK 3 L TENSOR REMARK 3 L11: 3.7299 L22: 2.3563 REMARK 3 L33: 2.2980 L12: 1.0153 REMARK 3 L13: -0.9621 L23: -1.3296 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.5442 S13: -0.5442 REMARK 3 S21: 0.0342 S22: -0.0584 S23: -0.1194 REMARK 3 S31: -0.0542 S32: 0.1655 S33: 0.0046 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=CS. NUMBER OF REMARK 3 ATOMS WITH PROPER CCP4 ATOM TYPE=1622. NUMBER WITH APPROX REMARK 3 DEFAULT CCP4 ATOM TYPE=0. NUMBER TREATED BY BAD NON-BONDED REMARK 3 CONTACTS=2. REMARK 4 REMARK 4 5A9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 30.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CSCL2, 15 % PEG 3350 AT 20 REMARK 280 DEGREES CELCIUS, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.26500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.53500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.13250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.53500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 165.39750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.13250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.53500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.53500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 165.39750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 110.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2094 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 588 REMARK 465 THR A 589 REMARK 465 SER A 590 REMARK 465 GLN A 591 REMARK 465 GLY A 592 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 476 CS CS A 1605 1.72 REMARK 500 ND1 HIS A 465 CS CS A 1605 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 450 35.35 -141.37 REMARK 500 THR A 450 34.39 -141.37 REMARK 500 ASN A 471 -121.59 56.76 REMARK 500 TYR A 543 31.96 74.31 REMARK 500 THR A 563 79.94 -162.88 REMARK 500 ASP A 565 13.51 -143.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ACETATE (ACT): FROM CRYSTALLISATION CONDITION REMARK 600 CESIUM (CS): CESIUM ION REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A1603 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 441 OE1 REMARK 620 2 GLU A 441 OE2 47.5 REMARK 620 3 HOH A2093 O 70.3 117.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A1605 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 565 OD2 REMARK 620 2 ASP A 478 OD1 164.6 REMARK 620 3 ASP A 478 OD2 134.0 52.3 REMARK 620 4 ASP A 565 OD1 48.7 140.9 88.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 1605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A9D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF PEPT1 REMARK 900 RELATED ID: 5A9I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF PEPT2 DBREF 5A9H A 410 601 UNP Q63424 S15A2_RAT 410 601 SEQADV 5A9H MET A 408 UNP Q63424 EXPRESSION TAG SEQADV 5A9H ALA A 409 UNP Q63424 EXPRESSION TAG SEQRES 1 A 194 MET ALA ALA SER GLN GLU ILE PHE LEU GLN VAL LEU ASN SEQRES 2 A 194 LEU ALA ASP GLY ASP VAL LYS VAL THR VAL LEU GLY SER SEQRES 3 A 194 ARG ASN ASN SER LEU LEU VAL GLU SER VAL SER SER PHE SEQRES 4 A 194 GLN ASN THR THR HIS TYR SER LYS LEU HIS LEU GLU ALA SEQRES 5 A 194 LYS SER GLN ASP LEU HIS PHE HIS LEU LYS TYR ASN SER SEQRES 6 A 194 LEU SER VAL HIS ASN ASP HIS SER VAL GLU GLU LYS ASN SEQRES 7 A 194 CYS TYR GLN LEU LEU ILE HIS GLN ASP GLY GLU SER ILE SEQRES 8 A 194 SER SER MET LEU VAL LYS ASP THR GLY ILE LYS PRO ALA SEQRES 9 A 194 ASN GLY MET ALA ALA ILE ARG PHE ILE ASN THR LEU HIS SEQRES 10 A 194 LYS ASP LEU ASN ILE SER LEU ASP THR ASP ALA PRO LEU SEQRES 11 A 194 SER VAL GLY LYS ASP TYR GLY VAL SER ALA TYR ARG THR SEQRES 12 A 194 VAL LEU ARG GLY LYS TYR PRO ALA VAL HIS CYS GLU THR SEQRES 13 A 194 GLU ASP LYS VAL PHE SER LEU ASP LEU GLY GLN LEU ASP SEQRES 14 A 194 PHE GLY THR THR TYR LEU PHE VAL ILE THR ASN ILE THR SEQRES 15 A 194 SER GLN GLY LEU GLN ALA TRP LYS ALA GLU ASP ILE HET GOL A1602 6 HET CS A1603 1 HET ACT A1604 7 HET CS A1605 1 HETNAM GOL GLYCEROL HETNAM CS CESIUM ION HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 CS 2(CS 1+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 6 HOH *94(H2 O) SHEET 1 AA 4 SER A 453 HIS A 456 0 SHEET 2 AA 4 GLU A 413 ASN A 420 -1 O ILE A 414 N LEU A 455 SHEET 3 AA 4 CYS A 486 ASP A 494 1 O TYR A 487 N GLN A 417 SHEET 4 AA 4 SER A 497 LYS A 504 -1 O SER A 497 N ASP A 494 SHEET 1 AB 4 SER A 437 VAL A 443 0 SHEET 2 AB 4 VAL A 426 LEU A 431 -1 O VAL A 426 N VAL A 443 SHEET 3 AB 4 SER A 461 TYR A 470 -1 O HIS A 465 N LEU A 431 SHEET 4 AB 4 LEU A 473 GLU A 482 -1 O LEU A 473 N TYR A 470 SHEET 1 AC 2 GLY A 544 VAL A 545 0 SHEET 2 AC 2 MET A 514 ASN A 521 -1 N ASN A 521 O GLY A 544 SHEET 1 AD 2 ARG A 549 LEU A 552 0 SHEET 2 AD 2 MET A 514 ASN A 521 -1 O ALA A 515 N VAL A 551 SHEET 1 AE 4 ALA A 595 GLU A 599 0 SHEET 2 AE 4 THR A 580 ILE A 585 -1 O LEU A 582 N ALA A 598 SHEET 3 AE 4 MET A 514 ASN A 521 1 O ALA A 516 N TYR A 581 SHEET 4 AE 4 GLY A 544 VAL A 545 -1 O GLY A 544 N ASN A 521 SHEET 1 AF 4 ALA A 595 GLU A 599 0 SHEET 2 AF 4 THR A 580 ILE A 585 -1 O LEU A 582 N ALA A 598 SHEET 3 AF 4 MET A 514 ASN A 521 1 O ALA A 516 N TYR A 581 SHEET 4 AF 4 ARG A 549 LEU A 552 -1 O ARG A 549 N ILE A 517 SHEET 1 AG 4 LEU A 537 VAL A 539 0 SHEET 2 AG 4 LEU A 527 SER A 530 -1 O LEU A 527 N VAL A 539 SHEET 3 AG 4 VAL A 559 GLU A 562 -1 O HIS A 560 N SER A 530 SHEET 4 AG 4 VAL A 567 LEU A 570 -1 O PHE A 568 N CYS A 561 SHEET 1 AH 2 GLY A 554 LYS A 555 0 SHEET 2 AH 2 GLN A 574 LEU A 575 -1 O LEU A 575 N GLY A 554 LINK CS CS A1603 OE1 GLU A 441 1555 7555 2.56 LINK CS CS A1603 OE2 GLU A 441 1555 7555 2.87 LINK CS CS A1603 O HOH A2093 1555 1555 2.58 LINK CS CS A1605 OD2 ASP A 565 1555 5555 2.80 LINK CS CS A1605 OD1 ASP A 478 1555 1555 2.53 LINK CS CS A1605 OD2 ASP A 478 1555 1555 2.51 LINK CS CS A1605 OD1 ASP A 565 1555 5555 2.53 CISPEP 1 GLN A 447 ASN A 448 0 1.89 CISPEP 2 THR A 563 GLU A 564 0 -10.58 SITE 1 AC1 5 ASP A 463 HIS A 479 SER A 480 LYS A 525 SITE 2 AC1 5 HOH A2041 SITE 1 AC2 3 GLU A 441 HIS A 451 HOH A2093 SITE 1 AC3 7 SER A 442 SER A 444 ASN A 448 HOH A2016 SITE 2 AC3 7 HOH A2025 HOH A2093 HOH A2094 SITE 1 AC4 4 HIS A 465 HIS A 476 ASP A 478 ASP A 565 CRYST1 43.070 43.070 220.530 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023218 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004535 0.00000