HEADER TRANSPORT PROTEIN 21-JUL-15 5A9I TITLE CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF PEPT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUTE CARRIER FAMILY 15 MEMBER 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 410-601; COMPND 5 SYNONYM: PEPT2, KIDNEY H(+)/PEPTIDE COTRANSPORTER, OLIGOPEPTIDE COMPND 6 TRANSPORTER, KIDNEY ISOFORM, PEPTIDE TRANSPORTER 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLOU3 KEYWDS TRANSPORT PROTEIN, PEPT2, EXTRACELLULAR DOMAIN, MFS EXPDTA X-RAY DIFFRACTION AUTHOR J.H.BEALE,S.NEWSTEAD REVDAT 4 09-OCT-19 5A9I 1 REMARK REVDAT 3 08-MAY-19 5A9I 1 REMARK LINK REVDAT 2 21-OCT-15 5A9I 1 JRNL REVDAT 1 09-SEP-15 5A9I 0 JRNL AUTH J.H.BEALE,J.L.PARKER,F.SAMSUDIN,A.L.BARRETT,A.SENAN, JRNL AUTH 2 L.E.BIRD,D.SCOTT,R.J.OWENS,M.S.P.SANSON,S.J.TUCKER, JRNL AUTH 3 D.MEREDITH,P.W.FOWLER,S.NEWSTEAD JRNL TITL CRYSTAL STRUCTURES OF THE EXTRACELLULAR DOMAIN FROM PEPT1 JRNL TITL 2 AND PEPT2 PROVIDE NOVEL INSIGHTS INTO MAMMALIAN PEPTIDE JRNL TITL 3 TRANSPORT JRNL REF STRUCTURE V. 23 1889 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26320580 JRNL DOI 10.1016/J.STR.2015.07.016 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1090 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2722 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2426 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2592 REMARK 3 BIN R VALUE (WORKING SET) : 0.2394 REMARK 3 BIN FREE R VALUE : 0.3104 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.78 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.16530 REMARK 3 B22 (A**2) : -4.16530 REMARK 3 B33 (A**2) : 8.33070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.465 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.760 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.324 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.733 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.328 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4664 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6319 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1631 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 129 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 671 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4664 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 616 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4916 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.29 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.23 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|410 - A|504 } REMARK 3 ORIGIN FOR THE GROUP (A): -14.2431 73.9555 167.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: -0.2026 REMARK 3 T33: -0.1622 T12: -0.0799 REMARK 3 T13: -0.1139 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 4.7246 L22: 7.2066 REMARK 3 L33: 2.7721 L12: 0.6688 REMARK 3 L13: -0.6469 L23: 1.4376 REMARK 3 S TENSOR REMARK 3 S11: -0.2640 S12: 0.2467 S13: 0.1821 REMARK 3 S21: -0.5941 S22: 0.2226 S23: 0.5945 REMARK 3 S31: -0.3924 S32: -0.4088 S33: 0.0414 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|514 - A|601 } REMARK 3 ORIGIN FOR THE GROUP (A): -16.4784 61.6678 187.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.0501 T22: -0.0556 REMARK 3 T33: -0.1271 T12: 0.0374 REMARK 3 T13: -0.0528 T23: -0.0526 REMARK 3 L TENSOR REMARK 3 L11: 1.7297 L22: 3.2503 REMARK 3 L33: 5.9885 L12: -0.3483 REMARK 3 L13: -0.1728 L23: 1.2153 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.0568 S13: 0.0517 REMARK 3 S21: 0.0445 S22: 0.0435 S23: 0.2290 REMARK 3 S31: -0.1992 S32: -0.7435 S33: -0.0870 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|410 - B|504 } REMARK 3 ORIGIN FOR THE GROUP (A): -19.7601 52.0021 157.1350 REMARK 3 T TENSOR REMARK 3 T11: -0.0364 T22: -0.1417 REMARK 3 T33: -0.2322 T12: -0.2128 REMARK 3 T13: 0.0611 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 4.0202 L22: 5.0919 REMARK 3 L33: 6.6162 L12: 0.7028 REMARK 3 L13: -0.0339 L23: 1.0831 REMARK 3 S TENSOR REMARK 3 S11: 0.1683 S12: 0.1794 S13: 0.1876 REMARK 3 S21: 0.2801 S22: -0.1245 S23: 0.1490 REMARK 3 S31: 0.1695 S32: -0.5306 S33: -0.0438 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|514 - B|601 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.4163 60.4251 140.5090 REMARK 3 T TENSOR REMARK 3 T11: -0.0867 T22: -0.0599 REMARK 3 T33: -0.1023 T12: -0.1546 REMARK 3 T13: 0.1223 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.3970 L22: 4.2070 REMARK 3 L33: 6.2271 L12: 0.5931 REMARK 3 L13: -1.2812 L23: 1.2123 REMARK 3 S TENSOR REMARK 3 S11: 0.3293 S12: -0.0155 S13: 0.6055 REMARK 3 S21: -0.1933 S22: -0.1189 S23: -0.0557 REMARK 3 S31: -0.4992 S32: -0.1937 S33: -0.2103 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { C|410 - C|504 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.5650 18.5843 176.4720 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: -0.2836 REMARK 3 T33: -0.3040 T12: 0.1872 REMARK 3 T13: -0.1132 T23: -0.1079 REMARK 3 L TENSOR REMARK 3 L11: 6.7104 L22: 5.5051 REMARK 3 L33: 3.1047 L12: 0.2024 REMARK 3 L13: 0.7303 L23: 0.8761 REMARK 3 S TENSOR REMARK 3 S11: 0.2926 S12: -0.0940 S13: -0.2240 REMARK 3 S21: -0.3788 S22: -0.3624 S23: 0.4991 REMARK 3 S31: 0.3525 S32: -0.4188 S33: 0.0698 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { C|514 - C|601 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.8228 40.5059 182.7250 REMARK 3 T TENSOR REMARK 3 T11: -0.1509 T22: -0.1877 REMARK 3 T33: 0.1469 T12: 0.1448 REMARK 3 T13: -0.0556 T23: -0.2076 REMARK 3 L TENSOR REMARK 3 L11: 4.9017 L22: 6.4692 REMARK 3 L33: 6.7370 L12: -2.5844 REMARK 3 L13: 0.5090 L23: 3.6545 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.2965 S13: -0.4415 REMARK 3 S21: -0.2031 S22: -0.1628 S23: -0.3238 REMARK 3 S31: 0.0781 S32: 0.0765 S33: 0.1427 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. REMARK 4 REMARK 4 5A9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 58.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M (NH4)3 CITRATE PH 5.8, 21 % PEG REMARK 280 3350. 10 MG.ML AT 20 DEGREES CELCIUS, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.62000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.31000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.31000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.62000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 434 57.59 -149.32 REMARK 500 ASN A 435 24.46 49.23 REMARK 500 ASN A 448 43.16 -83.49 REMARK 500 THR A 450 59.61 -98.38 REMARK 500 ASN A 471 -128.55 59.63 REMARK 500 ASP A 534 -151.60 -93.69 REMARK 500 TYR A 556 77.58 -119.14 REMARK 500 ALA A 558 74.34 -151.80 REMARK 500 ARG B 434 52.91 -147.30 REMARK 500 THR B 450 73.52 -113.07 REMARK 500 ASN B 471 59.61 37.44 REMARK 500 ASP B 534 -147.56 -95.36 REMARK 500 TYR B 556 79.43 -119.21 REMARK 500 ASP C 425 110.75 -160.76 REMARK 500 THR C 449 108.66 -42.11 REMARK 500 SER C 472 16.20 59.19 REMARK 500 ASN C 477 -179.06 -176.39 REMARK 500 ASP C 478 107.54 -171.48 REMARK 500 ASP C 532 -157.67 -149.14 REMARK 500 ALA C 558 72.29 -152.19 REMARK 500 ASP C 565 -71.68 -89.78 REMARK 500 THR C 589 125.03 -37.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 CITRATE (CIT): FROM CRYSTALLISATION CONDITION REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A9D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF PEPT1 REMARK 900 RELATED ID: 5A9H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF PEPT2 DBREF 5A9I A 410 601 UNP Q63424 S15A2_RAT 410 601 DBREF 5A9I B 410 601 UNP Q63424 S15A2_RAT 410 601 DBREF 5A9I C 410 601 UNP Q63424 S15A2_RAT 410 601 SEQADV 5A9I MSE A 408 UNP Q63424 EXPRESSION TAG SEQADV 5A9I ALA A 409 UNP Q63424 EXPRESSION TAG SEQADV 5A9I MSE B 408 UNP Q63424 EXPRESSION TAG SEQADV 5A9I ALA B 409 UNP Q63424 EXPRESSION TAG SEQADV 5A9I MSE C 408 UNP Q63424 EXPRESSION TAG SEQADV 5A9I ALA C 409 UNP Q63424 EXPRESSION TAG SEQRES 1 A 194 MSE ALA ALA SER GLN GLU ILE PHE LEU GLN VAL LEU ASN SEQRES 2 A 194 LEU ALA ASP GLY ASP VAL LYS VAL THR VAL LEU GLY SER SEQRES 3 A 194 ARG ASN ASN SER LEU LEU VAL GLU SER VAL SER SER PHE SEQRES 4 A 194 GLN ASN THR THR HIS TYR SER LYS LEU HIS LEU GLU ALA SEQRES 5 A 194 LYS SER GLN ASP LEU HIS PHE HIS LEU LYS TYR ASN SER SEQRES 6 A 194 LEU SER VAL HIS ASN ASP HIS SER VAL GLU GLU LYS ASN SEQRES 7 A 194 CYS TYR GLN LEU LEU ILE HIS GLN ASP GLY GLU SER ILE SEQRES 8 A 194 SER SER MSE LEU VAL LYS ASP THR GLY ILE LYS PRO ALA SEQRES 9 A 194 ASN GLY MSE ALA ALA ILE ARG PHE ILE ASN THR LEU HIS SEQRES 10 A 194 LYS ASP LEU ASN ILE SER LEU ASP THR ASP ALA PRO LEU SEQRES 11 A 194 SER VAL GLY LYS ASP TYR GLY VAL SER ALA TYR ARG THR SEQRES 12 A 194 VAL LEU ARG GLY LYS TYR PRO ALA VAL HIS CYS GLU THR SEQRES 13 A 194 GLU ASP LYS VAL PHE SER LEU ASP LEU GLY GLN LEU ASP SEQRES 14 A 194 PHE GLY THR THR TYR LEU PHE VAL ILE THR ASN ILE THR SEQRES 15 A 194 SER GLN GLY LEU GLN ALA TRP LYS ALA GLU ASP ILE SEQRES 1 B 194 MSE ALA ALA SER GLN GLU ILE PHE LEU GLN VAL LEU ASN SEQRES 2 B 194 LEU ALA ASP GLY ASP VAL LYS VAL THR VAL LEU GLY SER SEQRES 3 B 194 ARG ASN ASN SER LEU LEU VAL GLU SER VAL SER SER PHE SEQRES 4 B 194 GLN ASN THR THR HIS TYR SER LYS LEU HIS LEU GLU ALA SEQRES 5 B 194 LYS SER GLN ASP LEU HIS PHE HIS LEU LYS TYR ASN SER SEQRES 6 B 194 LEU SER VAL HIS ASN ASP HIS SER VAL GLU GLU LYS ASN SEQRES 7 B 194 CYS TYR GLN LEU LEU ILE HIS GLN ASP GLY GLU SER ILE SEQRES 8 B 194 SER SER MSE LEU VAL LYS ASP THR GLY ILE LYS PRO ALA SEQRES 9 B 194 ASN GLY MSE ALA ALA ILE ARG PHE ILE ASN THR LEU HIS SEQRES 10 B 194 LYS ASP LEU ASN ILE SER LEU ASP THR ASP ALA PRO LEU SEQRES 11 B 194 SER VAL GLY LYS ASP TYR GLY VAL SER ALA TYR ARG THR SEQRES 12 B 194 VAL LEU ARG GLY LYS TYR PRO ALA VAL HIS CYS GLU THR SEQRES 13 B 194 GLU ASP LYS VAL PHE SER LEU ASP LEU GLY GLN LEU ASP SEQRES 14 B 194 PHE GLY THR THR TYR LEU PHE VAL ILE THR ASN ILE THR SEQRES 15 B 194 SER GLN GLY LEU GLN ALA TRP LYS ALA GLU ASP ILE SEQRES 1 C 194 MSE ALA ALA SER GLN GLU ILE PHE LEU GLN VAL LEU ASN SEQRES 2 C 194 LEU ALA ASP GLY ASP VAL LYS VAL THR VAL LEU GLY SER SEQRES 3 C 194 ARG ASN ASN SER LEU LEU VAL GLU SER VAL SER SER PHE SEQRES 4 C 194 GLN ASN THR THR HIS TYR SER LYS LEU HIS LEU GLU ALA SEQRES 5 C 194 LYS SER GLN ASP LEU HIS PHE HIS LEU LYS TYR ASN SER SEQRES 6 C 194 LEU SER VAL HIS ASN ASP HIS SER VAL GLU GLU LYS ASN SEQRES 7 C 194 CYS TYR GLN LEU LEU ILE HIS GLN ASP GLY GLU SER ILE SEQRES 8 C 194 SER SER MSE LEU VAL LYS ASP THR GLY ILE LYS PRO ALA SEQRES 9 C 194 ASN GLY MSE ALA ALA ILE ARG PHE ILE ASN THR LEU HIS SEQRES 10 C 194 LYS ASP LEU ASN ILE SER LEU ASP THR ASP ALA PRO LEU SEQRES 11 C 194 SER VAL GLY LYS ASP TYR GLY VAL SER ALA TYR ARG THR SEQRES 12 C 194 VAL LEU ARG GLY LYS TYR PRO ALA VAL HIS CYS GLU THR SEQRES 13 C 194 GLU ASP LYS VAL PHE SER LEU ASP LEU GLY GLN LEU ASP SEQRES 14 C 194 PHE GLY THR THR TYR LEU PHE VAL ILE THR ASN ILE THR SEQRES 15 C 194 SER GLN GLY LEU GLN ALA TRP LYS ALA GLU ASP ILE MODRES 5A9I MSE A 408 MET SELENOMETHIONINE MODRES 5A9I MSE A 501 MET SELENOMETHIONINE MODRES 5A9I MSE A 514 MET SELENOMETHIONINE MODRES 5A9I MSE B 408 MET SELENOMETHIONINE MODRES 5A9I MSE B 501 MET SELENOMETHIONINE MODRES 5A9I MSE B 514 MET SELENOMETHIONINE MODRES 5A9I MSE C 408 MET SELENOMETHIONINE MODRES 5A9I MSE C 501 MET SELENOMETHIONINE MODRES 5A9I MSE C 514 MET SELENOMETHIONINE HET MSE A 408 8 HET MSE A 501 8 HET MSE A 514 8 HET MSE B 408 8 HET MSE B 501 8 HET MSE B 514 8 HET MSE C 408 8 HET MSE C 501 16 HET MSE C 514 8 HET CIT B1602 13 HET CIT B1603 13 HET GOL B1604 6 HETNAM MSE SELENOMETHIONINE HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *93(H2 O) SHEET 1 AA 8 SER A 497 ASP A 505 0 SHEET 2 AA 8 ASN A 485 ASP A 494 -1 O CYS A 486 N ASP A 505 SHEET 3 AA 8 GLU A 413 ASN A 420 1 O PHE A 415 N TYR A 487 SHEET 4 AA 8 HIS A 451 HIS A 456 -1 O SER A 453 N LEU A 416 SHEET 5 AA 8 HIS B 451 HIS B 456 -1 O TYR B 452 N TYR A 452 SHEET 6 AA 8 GLU B 413 ASN B 420 -1 O ILE B 414 N LEU B 455 SHEET 7 AA 8 ASN B 485 ASP B 494 1 O ASN B 485 N PHE B 415 SHEET 8 AA 8 SER B 497 ASP B 505 -1 O SER B 497 N ASP B 494 SHEET 1 AB 4 SER A 437 VAL A 443 0 SHEET 2 AB 4 VAL A 426 LEU A 431 -1 O VAL A 426 N VAL A 443 SHEET 3 AB 4 SER A 461 TYR A 470 -1 O HIS A 465 N LEU A 431 SHEET 4 AB 4 LEU A 473 GLU A 482 -1 O LEU A 473 N TYR A 470 SHEET 1 AC 2 GLY A 544 VAL A 545 0 SHEET 2 AC 2 MSE A 514 ASN A 521 -1 N ASN A 521 O GLY A 544 SHEET 1 AD 2 ARG A 549 LEU A 552 0 SHEET 2 AD 2 MSE A 514 ASN A 521 -1 O ALA A 515 N VAL A 551 SHEET 1 AE 4 LEU A 593 GLU A 599 0 SHEET 2 AE 4 THR A 580 ILE A 588 -1 O LEU A 582 N ALA A 598 SHEET 3 AE 4 MSE A 514 ASN A 521 1 O ALA A 516 N TYR A 581 SHEET 4 AE 4 GLY A 544 VAL A 545 -1 O GLY A 544 N ASN A 521 SHEET 1 AF 4 LEU A 593 GLU A 599 0 SHEET 2 AF 4 THR A 580 ILE A 588 -1 O LEU A 582 N ALA A 598 SHEET 3 AF 4 MSE A 514 ASN A 521 1 O ALA A 516 N TYR A 581 SHEET 4 AF 4 ARG A 549 LEU A 552 -1 O ARG A 549 N ILE A 517 SHEET 1 AG 4 LEU A 537 VAL A 539 0 SHEET 2 AG 4 LEU A 527 SER A 530 -1 O LEU A 527 N VAL A 539 SHEET 3 AG 4 VAL A 559 GLU A 562 -1 O HIS A 560 N SER A 530 SHEET 4 AG 4 VAL A 567 LEU A 570 -1 O PHE A 568 N CYS A 561 SHEET 1 AH 2 GLY A 554 TYR A 556 0 SHEET 2 AH 2 GLY A 573 LEU A 575 -1 O GLY A 573 N TYR A 556 SHEET 1 BA 4 SER B 437 VAL B 443 0 SHEET 2 BA 4 VAL B 426 LEU B 431 -1 O VAL B 426 N VAL B 443 SHEET 3 BA 4 SER B 461 TYR B 470 -1 O HIS B 465 N LEU B 431 SHEET 4 BA 4 LEU B 473 GLU B 482 -1 O LEU B 473 N TYR B 470 SHEET 1 BB 2 GLY B 544 VAL B 545 0 SHEET 2 BB 2 MSE B 514 ASN B 521 -1 N ASN B 521 O GLY B 544 SHEET 1 BC 2 ARG B 549 LEU B 552 0 SHEET 2 BC 2 MSE B 514 ASN B 521 -1 O ALA B 515 N VAL B 551 SHEET 1 BD 4 GLY B 592 GLU B 599 0 SHEET 2 BD 4 THR B 580 ILE B 588 -1 O LEU B 582 N ALA B 598 SHEET 3 BD 4 MSE B 514 ASN B 521 1 O ALA B 516 N TYR B 581 SHEET 4 BD 4 GLY B 544 VAL B 545 -1 O GLY B 544 N ASN B 521 SHEET 1 BE 4 GLY B 592 GLU B 599 0 SHEET 2 BE 4 THR B 580 ILE B 588 -1 O LEU B 582 N ALA B 598 SHEET 3 BE 4 MSE B 514 ASN B 521 1 O ALA B 516 N TYR B 581 SHEET 4 BE 4 ARG B 549 LEU B 552 -1 O ARG B 549 N ILE B 517 SHEET 1 BF 4 LEU B 537 VAL B 539 0 SHEET 2 BF 4 LEU B 527 SER B 530 -1 O LEU B 527 N VAL B 539 SHEET 3 BF 4 VAL B 559 GLU B 562 -1 O HIS B 560 N SER B 530 SHEET 4 BF 4 VAL B 567 LEU B 570 -1 O PHE B 568 N CYS B 561 SHEET 1 BG 2 GLY B 554 TYR B 556 0 SHEET 2 BG 2 GLY B 573 LEU B 575 -1 O GLY B 573 N TYR B 556 SHEET 1 CA 4 SER C 453 HIS C 456 0 SHEET 2 CA 4 GLU C 413 ASN C 420 -1 O ILE C 414 N LEU C 455 SHEET 3 CA 4 ASN C 485 ASP C 494 1 O ASN C 485 N PHE C 415 SHEET 4 CA 4 SER C 497 ASP C 505 -1 O SER C 497 N ASP C 494 SHEET 1 CB 4 SER C 437 SER C 444 0 SHEET 2 CB 4 ASP C 425 LEU C 431 -1 O VAL C 426 N VAL C 443 SHEET 3 CB 4 SER C 461 TYR C 470 -1 O HIS C 465 N LEU C 431 SHEET 4 CB 4 LEU C 473 VAL C 475 -1 O LEU C 473 N TYR C 470 SHEET 1 CC 4 SER C 437 SER C 444 0 SHEET 2 CC 4 ASP C 425 LEU C 431 -1 O VAL C 426 N VAL C 443 SHEET 3 CC 4 SER C 461 TYR C 470 -1 O HIS C 465 N LEU C 431 SHEET 4 CC 4 HIS C 479 GLU C 482 -1 O HIS C 479 N LEU C 464 SHEET 1 CD 2 LEU C 473 VAL C 475 0 SHEET 2 CD 2 SER C 461 TYR C 470 -1 O LEU C 468 N VAL C 475 SHEET 1 CE 2 GLY C 544 VAL C 545 0 SHEET 2 CE 2 MSE C 514 ASN C 521 -1 N ASN C 521 O GLY C 544 SHEET 1 CF 2 ARG C 549 LEU C 552 0 SHEET 2 CF 2 MSE C 514 ASN C 521 -1 O ALA C 515 N VAL C 551 SHEET 1 CG 4 GLY C 592 GLU C 599 0 SHEET 2 CG 4 THR C 580 ILE C 588 -1 O LEU C 582 N ALA C 598 SHEET 3 CG 4 MSE C 514 ASN C 521 1 O ALA C 516 N TYR C 581 SHEET 4 CG 4 GLY C 544 VAL C 545 -1 O GLY C 544 N ASN C 521 SHEET 1 CH 4 GLY C 592 GLU C 599 0 SHEET 2 CH 4 THR C 580 ILE C 588 -1 O LEU C 582 N ALA C 598 SHEET 3 CH 4 MSE C 514 ASN C 521 1 O ALA C 516 N TYR C 581 SHEET 4 CH 4 ARG C 549 LEU C 552 -1 O ARG C 549 N ILE C 517 SHEET 1 CI 4 LEU C 537 VAL C 539 0 SHEET 2 CI 4 LEU C 527 SER C 530 -1 O LEU C 527 N VAL C 539 SHEET 3 CI 4 VAL C 559 GLU C 562 -1 O HIS C 560 N SER C 530 SHEET 4 CI 4 VAL C 567 LEU C 570 -1 O PHE C 568 N CYS C 561 SHEET 1 CJ 2 GLY C 554 TYR C 556 0 SHEET 2 CJ 2 GLY C 573 LEU C 575 -1 O GLY C 573 N TYR C 556 LINK C MSE A 408 N ALA A 409 1555 1555 1.38 LINK C SER A 500 N MSE A 501 1555 1555 1.34 LINK C MSE A 501 N LEU A 502 1555 1555 1.34 LINK C GLY A 513 N MSE A 514 1555 1555 1.35 LINK C MSE A 514 N ALA A 515 1555 1555 1.35 LINK C MSE B 408 N ALA B 409 1555 1555 1.36 LINK C SER B 500 N MSE B 501 1555 1555 1.33 LINK C MSE B 501 N LEU B 502 1555 1555 1.35 LINK C GLY B 513 N MSE B 514 1555 1555 1.33 LINK C MSE B 514 N ALA B 515 1555 1555 1.31 LINK C MSE C 408 N ALA C 409 1555 1555 1.34 LINK C SER C 500 N BMSE C 501 1555 1555 1.34 LINK C SER C 500 N AMSE C 501 1555 1555 1.34 LINK C BMSE C 501 N LEU C 502 1555 1555 1.35 LINK C AMSE C 501 N LEU C 502 1555 1555 1.35 LINK C GLY C 513 N MSE C 514 1555 1555 1.36 LINK C MSE C 514 N ALA C 515 1555 1555 1.34 SITE 1 AC1 7 LEU B 523 HIS B 524 LYS B 525 THR B 563 SITE 2 AC1 7 ASP B 565 LYS B 566 ASN B 587 SITE 1 AC2 4 LYS A 460 ARG B 434 ASN B 435 HOH B2005 SITE 1 AC3 3 HIS B 467 LYS B 469 SER B 474 CRYST1 95.750 95.750 165.930 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010444 0.006030 0.000000 0.00000 SCALE2 0.000000 0.012060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006027 0.00000 MTRIX1 1 0.708120 -0.589680 0.388390 -31.15241 1 MTRIX2 1 -0.597940 -0.793340 -0.114330 121.04666 1 MTRIX3 1 0.375550 -0.151280 -0.914370 327.13208 1 MTRIX1 2 0.907840 -0.290690 -0.302200 100.91999 1 MTRIX2 2 0.183680 -0.372200 0.909800 -103.90850 1 MTRIX3 2 -0.376950 -0.881460 -0.284500 284.10938 1 HETATM 1 N MSE A 408 -0.263 60.798 167.902 1.00 96.17 N HETATM 2 CA MSE A 408 -1.518 60.622 167.171 1.00 95.94 C HETATM 3 C MSE A 408 -1.637 61.567 165.946 1.00 97.35 C HETATM 4 O MSE A 408 -1.677 61.062 164.810 1.00 96.47 O HETATM 5 CB MSE A 408 -2.727 60.745 168.129 1.00 98.65 C HETATM 6 CG MSE A 408 -4.098 60.730 167.434 1.00106.13 C HETATM 7 SE MSE A 408 -4.697 58.994 166.814 0.75114.60 SE HETATM 8 CE MSE A 408 -4.883 58.070 168.596 1.00111.02 C