data_5AB8 # _entry.id 5AB8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5AB8 pdb_00005ab8 10.2210/pdb5ab8/pdb PDBE EBI-64593 ? ? WWPDB D_1290064593 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-11-04 2 'Structure model' 1 1 2016-03-09 3 'Structure model' 1 2 2019-03-06 4 'Structure model' 1 3 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Experimental preparation' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_initial_refinement_model 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.temp' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_database_status.status_code_sf' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AB8 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-08-04 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pesce, A.' 1 'Bustamante, J.P.' 2 'Bidon-Chanal, A.' 3 'Boechi, L.' 4 'Estrin, D.A.' 5 'Luque, F.J.' 6 'Sebilo, A.' 7 'Guertin, M.' 8 'Bolognesi, M.' 9 'Ascenzi, P.' 10 'Nardini, M.' 11 # _citation.id primary _citation.title 'The N-Terminal Pre-A Region of Mycobacterium Tuberculosis 2/2Hbn Promotes No-Dioxygenase Activity.' _citation.journal_abbrev 'FEBS J.' _citation.journal_volume 283 _citation.page_first 305 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26499089 _citation.pdbx_database_id_DOI 10.1111/FEBS.13571 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pesce, A.' 1 ? primary 'Bustamante, J.P.' 2 ? primary 'Bidon-Chanal, A.' 3 ? primary 'Boechi, L.' 4 ? primary 'Estrin, D.A.' 5 ? primary 'Luque, F.J.' 6 ? primary 'Sebilo, A.' 7 ? primary 'Guertin, M.' 8 ? primary 'Bolognesi, M.' 9 ? primary 'Ascenzi, P.' 10 ? primary 'Nardini, M.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GROUP 1 TRUNCATED HEMOGLOBIN GLBN' 13119.839 1 ? ? 'UNP RESIDUES 12-128' ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 6 water nat water 18.015 148 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TRUNCATED HEMOGLOBIN, TRHBN, HEMOGLOBIN-LIKE PROTEIN HBN, HBN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHF SLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV ; _entity_poly.pdbx_seq_one_letter_code_can ;PISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHF SLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'FORMIC ACID' FMT 4 'ACETATE ION' ACT 5 GLYCEROL GOL 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ILE n 1 3 SER n 1 4 ILE n 1 5 TYR n 1 6 ASP n 1 7 LYS n 1 8 ILE n 1 9 GLY n 1 10 GLY n 1 11 HIS n 1 12 GLU n 1 13 ALA n 1 14 ILE n 1 15 GLU n 1 16 VAL n 1 17 VAL n 1 18 VAL n 1 19 GLU n 1 20 ASP n 1 21 PHE n 1 22 TYR n 1 23 VAL n 1 24 ARG n 1 25 VAL n 1 26 LEU n 1 27 ALA n 1 28 ASP n 1 29 ASP n 1 30 GLN n 1 31 LEU n 1 32 SER n 1 33 ALA n 1 34 PHE n 1 35 PHE n 1 36 SER n 1 37 GLY n 1 38 THR n 1 39 ASN n 1 40 MET n 1 41 SER n 1 42 ARG n 1 43 LEU n 1 44 LYS n 1 45 GLY n 1 46 LYS n 1 47 GLN n 1 48 VAL n 1 49 GLU n 1 50 PHE n 1 51 PHE n 1 52 ALA n 1 53 ALA n 1 54 ALA n 1 55 LEU n 1 56 GLY n 1 57 GLY n 1 58 PRO n 1 59 GLU n 1 60 PRO n 1 61 TYR n 1 62 THR n 1 63 GLY n 1 64 ALA n 1 65 PRO n 1 66 MET n 1 67 LYS n 1 68 GLN n 1 69 VAL n 1 70 HIS n 1 71 GLN n 1 72 GLY n 1 73 ARG n 1 74 GLY n 1 75 ILE n 1 76 THR n 1 77 MET n 1 78 HIS n 1 79 HIS n 1 80 PHE n 1 81 SER n 1 82 LEU n 1 83 VAL n 1 84 ALA n 1 85 GLY n 1 86 HIS n 1 87 LEU n 1 88 ALA n 1 89 ASP n 1 90 ALA n 1 91 LEU n 1 92 THR n 1 93 ALA n 1 94 ALA n 1 95 GLY n 1 96 VAL n 1 97 PRO n 1 98 SER n 1 99 GLU n 1 100 THR n 1 101 ILE n 1 102 THR n 1 103 GLU n 1 104 ILE n 1 105 LEU n 1 106 GLY n 1 107 VAL n 1 108 ILE n 1 109 ALA n 1 110 PRO n 1 111 LEU n 1 112 ALA n 1 113 VAL n 1 114 ASP n 1 115 VAL n 1 116 THR n 1 117 SER n 1 118 GLY n 1 119 GLU n 1 120 SER n 1 121 THR n 1 122 THR n 1 123 ALA n 1 124 PRO n 1 125 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MYCOBACTERIUM TUBERCULOSIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 12 12 PRO PRO A . n A 1 2 ILE 2 13 13 ILE ILE A . n A 1 3 SER 3 14 14 SER SER A . n A 1 4 ILE 4 15 15 ILE ILE A . n A 1 5 TYR 5 16 16 TYR TYR A . n A 1 6 ASP 6 17 17 ASP ASP A . n A 1 7 LYS 7 18 18 LYS LYS A . n A 1 8 ILE 8 19 19 ILE ILE A . n A 1 9 GLY 9 20 20 GLY GLY A . n A 1 10 GLY 10 21 21 GLY GLY A . n A 1 11 HIS 11 22 22 HIS HIS A . n A 1 12 GLU 12 23 23 GLU GLU A . n A 1 13 ALA 13 24 24 ALA ALA A . n A 1 14 ILE 14 25 25 ILE ILE A . n A 1 15 GLU 15 26 26 GLU GLU A . n A 1 16 VAL 16 27 27 VAL VAL A . n A 1 17 VAL 17 28 28 VAL VAL A . n A 1 18 VAL 18 29 29 VAL VAL A . n A 1 19 GLU 19 30 30 GLU GLU A . n A 1 20 ASP 20 31 31 ASP ASP A . n A 1 21 PHE 21 32 32 PHE PHE A . n A 1 22 TYR 22 33 33 TYR TYR A . n A 1 23 VAL 23 34 34 VAL VAL A . n A 1 24 ARG 24 35 35 ARG ARG A . n A 1 25 VAL 25 36 36 VAL VAL A . n A 1 26 LEU 26 37 37 LEU LEU A . n A 1 27 ALA 27 38 38 ALA ALA A . n A 1 28 ASP 28 39 39 ASP ASP A . n A 1 29 ASP 29 40 40 ASP ASP A . n A 1 30 GLN 30 41 41 GLN GLN A . n A 1 31 LEU 31 42 42 LEU LEU A . n A 1 32 SER 32 43 43 SER SER A . n A 1 33 ALA 33 44 44 ALA ALA A . n A 1 34 PHE 34 45 45 PHE PHE A . n A 1 35 PHE 35 46 46 PHE PHE A . n A 1 36 SER 36 47 47 SER SER A . n A 1 37 GLY 37 48 48 GLY GLY A . n A 1 38 THR 38 49 49 THR THR A . n A 1 39 ASN 39 50 50 ASN ASN A . n A 1 40 MET 40 51 51 MET MET A . n A 1 41 SER 41 52 52 SER SER A . n A 1 42 ARG 42 53 53 ARG ARG A . n A 1 43 LEU 43 54 54 LEU LEU A . n A 1 44 LYS 44 55 55 LYS LYS A . n A 1 45 GLY 45 56 56 GLY GLY A . n A 1 46 LYS 46 57 57 LYS LYS A . n A 1 47 GLN 47 58 58 GLN GLN A . n A 1 48 VAL 48 59 59 VAL VAL A . n A 1 49 GLU 49 60 60 GLU GLU A . n A 1 50 PHE 50 61 61 PHE PHE A . n A 1 51 PHE 51 62 62 PHE PHE A . n A 1 52 ALA 52 63 63 ALA ALA A . n A 1 53 ALA 53 64 64 ALA ALA A . n A 1 54 ALA 54 65 65 ALA ALA A . n A 1 55 LEU 55 66 66 LEU LEU A . n A 1 56 GLY 56 67 67 GLY GLY A . n A 1 57 GLY 57 68 68 GLY GLY A . n A 1 58 PRO 58 69 69 PRO PRO A . n A 1 59 GLU 59 70 70 GLU GLU A . n A 1 60 PRO 60 71 71 PRO PRO A . n A 1 61 TYR 61 72 72 TYR TYR A . n A 1 62 THR 62 73 73 THR THR A . n A 1 63 GLY 63 74 74 GLY GLY A . n A 1 64 ALA 64 75 75 ALA ALA A . n A 1 65 PRO 65 76 76 PRO PRO A . n A 1 66 MET 66 77 77 MET MET A . n A 1 67 LYS 67 78 78 LYS LYS A . n A 1 68 GLN 68 79 79 GLN GLN A . n A 1 69 VAL 69 80 80 VAL VAL A . n A 1 70 HIS 70 81 81 HIS HIS A . n A 1 71 GLN 71 82 82 GLN GLN A . n A 1 72 GLY 72 83 83 GLY GLY A . n A 1 73 ARG 73 84 84 ARG ARG A . n A 1 74 GLY 74 85 85 GLY GLY A . n A 1 75 ILE 75 86 86 ILE ILE A . n A 1 76 THR 76 87 87 THR THR A . n A 1 77 MET 77 88 88 MET MET A . n A 1 78 HIS 78 89 89 HIS HIS A . n A 1 79 HIS 79 90 90 HIS HIS A . n A 1 80 PHE 80 91 91 PHE PHE A . n A 1 81 SER 81 92 92 SER SER A . n A 1 82 LEU 82 93 93 LEU LEU A . n A 1 83 VAL 83 94 94 VAL VAL A . n A 1 84 ALA 84 95 95 ALA ALA A . n A 1 85 GLY 85 96 96 GLY GLY A . n A 1 86 HIS 86 97 97 HIS HIS A . n A 1 87 LEU 87 98 98 LEU LEU A . n A 1 88 ALA 88 99 99 ALA ALA A . n A 1 89 ASP 89 100 100 ASP ASP A . n A 1 90 ALA 90 101 101 ALA ALA A . n A 1 91 LEU 91 102 102 LEU LEU A . n A 1 92 THR 92 103 103 THR THR A . n A 1 93 ALA 93 104 104 ALA ALA A . n A 1 94 ALA 94 105 105 ALA ALA A . n A 1 95 GLY 95 106 106 GLY GLY A . n A 1 96 VAL 96 107 107 VAL VAL A . n A 1 97 PRO 97 108 108 PRO PRO A . n A 1 98 SER 98 109 109 SER SER A . n A 1 99 GLU 99 110 110 GLU GLU A . n A 1 100 THR 100 111 111 THR THR A . n A 1 101 ILE 101 112 112 ILE ILE A . n A 1 102 THR 102 113 113 THR THR A . n A 1 103 GLU 103 114 114 GLU GLU A . n A 1 104 ILE 104 115 115 ILE ILE A . n A 1 105 LEU 105 116 116 LEU LEU A . n A 1 106 GLY 106 117 117 GLY GLY A . n A 1 107 VAL 107 118 118 VAL VAL A . n A 1 108 ILE 108 119 119 ILE ILE A . n A 1 109 ALA 109 120 120 ALA ALA A . n A 1 110 PRO 110 121 121 PRO PRO A . n A 1 111 LEU 111 122 122 LEU LEU A . n A 1 112 ALA 112 123 123 ALA ALA A . n A 1 113 VAL 113 124 124 VAL VAL A . n A 1 114 ASP 114 125 125 ASP ASP A . n A 1 115 VAL 115 126 126 VAL VAL A . n A 1 116 THR 116 127 127 THR THR A . n A 1 117 SER 117 128 128 SER SER A . n A 1 118 GLY 118 129 ? ? ? A . n A 1 119 GLU 119 130 ? ? ? A . n A 1 120 SER 120 131 ? ? ? A . n A 1 121 THR 121 132 ? ? ? A . n A 1 122 THR 122 133 ? ? ? A . n A 1 123 ALA 123 134 ? ? ? A . n A 1 124 PRO 124 135 ? ? ? A . n A 1 125 VAL 125 136 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 144 144 HEM HEM A . C 3 FMT 1 1129 1129 FMT FMT A . D 4 ACT 1 1130 1130 ACT ACT A . E 5 GOL 1 1131 1131 GOL GOL A . F 5 GOL 1 1132 1132 GOL GOL A . G 6 HOH 1 2001 2001 HOH HOH A . G 6 HOH 2 2002 2002 HOH HOH A . G 6 HOH 3 2003 2003 HOH HOH A . G 6 HOH 4 2004 2004 HOH HOH A . G 6 HOH 5 2005 2005 HOH HOH A . G 6 HOH 6 2006 2006 HOH HOH A . G 6 HOH 7 2007 2007 HOH HOH A . G 6 HOH 8 2008 2008 HOH HOH A . G 6 HOH 9 2009 2009 HOH HOH A . G 6 HOH 10 2010 2010 HOH HOH A . G 6 HOH 11 2011 2011 HOH HOH A . G 6 HOH 12 2012 2012 HOH HOH A . G 6 HOH 13 2013 2013 HOH HOH A . G 6 HOH 14 2014 2014 HOH HOH A . G 6 HOH 15 2015 2015 HOH HOH A . G 6 HOH 16 2016 2016 HOH HOH A . G 6 HOH 17 2017 2017 HOH HOH A . G 6 HOH 18 2018 2018 HOH HOH A . G 6 HOH 19 2019 2019 HOH HOH A . G 6 HOH 20 2020 2020 HOH HOH A . G 6 HOH 21 2021 2021 HOH HOH A . G 6 HOH 22 2022 2022 HOH HOH A . G 6 HOH 23 2023 2023 HOH HOH A . G 6 HOH 24 2024 2024 HOH HOH A . G 6 HOH 25 2025 2025 HOH HOH A . G 6 HOH 26 2026 2026 HOH HOH A . G 6 HOH 27 2027 2027 HOH HOH A . G 6 HOH 28 2028 2028 HOH HOH A . G 6 HOH 29 2029 2029 HOH HOH A . G 6 HOH 30 2030 2030 HOH HOH A . G 6 HOH 31 2031 2031 HOH HOH A . G 6 HOH 32 2032 2032 HOH HOH A . G 6 HOH 33 2033 2033 HOH HOH A . G 6 HOH 34 2034 2034 HOH HOH A . G 6 HOH 35 2035 2035 HOH HOH A . G 6 HOH 36 2036 2036 HOH HOH A . G 6 HOH 37 2038 2038 HOH HOH A . G 6 HOH 38 2039 2039 HOH HOH A . G 6 HOH 39 2040 2040 HOH HOH A . G 6 HOH 40 2041 2041 HOH HOH A . G 6 HOH 41 2042 2042 HOH HOH A . G 6 HOH 42 2043 2043 HOH HOH A . G 6 HOH 43 2044 2044 HOH HOH A . G 6 HOH 44 2045 2045 HOH HOH A . G 6 HOH 45 2046 2046 HOH HOH A . G 6 HOH 46 2047 2047 HOH HOH A . G 6 HOH 47 2048 2048 HOH HOH A . G 6 HOH 48 2049 2049 HOH HOH A . G 6 HOH 49 2050 2050 HOH HOH A . G 6 HOH 50 2051 2051 HOH HOH A . G 6 HOH 51 2052 2052 HOH HOH A . G 6 HOH 52 2053 2053 HOH HOH A . G 6 HOH 53 2054 2054 HOH HOH A . G 6 HOH 54 2055 2055 HOH HOH A . G 6 HOH 55 2056 2056 HOH HOH A . G 6 HOH 56 2057 2057 HOH HOH A . G 6 HOH 57 2058 2058 HOH HOH A . G 6 HOH 58 2059 2059 HOH HOH A . G 6 HOH 59 2060 2060 HOH HOH A . G 6 HOH 60 2061 2061 HOH HOH A . G 6 HOH 61 2062 2062 HOH HOH A . G 6 HOH 62 2063 2063 HOH HOH A . G 6 HOH 63 2064 2064 HOH HOH A . G 6 HOH 64 2065 2065 HOH HOH A . G 6 HOH 65 2066 2066 HOH HOH A . G 6 HOH 66 2067 2067 HOH HOH A . G 6 HOH 67 2068 2068 HOH HOH A . G 6 HOH 68 2069 2069 HOH HOH A . G 6 HOH 69 2070 2070 HOH HOH A . G 6 HOH 70 2071 2071 HOH HOH A . G 6 HOH 71 2072 2072 HOH HOH A . G 6 HOH 72 2073 2073 HOH HOH A . G 6 HOH 73 2074 2074 HOH HOH A . G 6 HOH 74 2075 2075 HOH HOH A . G 6 HOH 75 2076 2076 HOH HOH A . G 6 HOH 76 2077 2077 HOH HOH A . G 6 HOH 77 2078 2078 HOH HOH A . G 6 HOH 78 2079 2079 HOH HOH A . G 6 HOH 79 2080 2080 HOH HOH A . G 6 HOH 80 2081 2081 HOH HOH A . G 6 HOH 81 2082 2082 HOH HOH A . G 6 HOH 82 2083 2083 HOH HOH A . G 6 HOH 83 2084 2084 HOH HOH A . G 6 HOH 84 2085 2085 HOH HOH A . G 6 HOH 85 2086 2086 HOH HOH A . G 6 HOH 86 2087 2087 HOH HOH A . G 6 HOH 87 2088 2088 HOH HOH A . G 6 HOH 88 2089 2089 HOH HOH A . G 6 HOH 89 2090 2090 HOH HOH A . G 6 HOH 90 2091 2091 HOH HOH A . G 6 HOH 91 2092 2092 HOH HOH A . G 6 HOH 92 2093 2093 HOH HOH A . G 6 HOH 93 2094 2094 HOH HOH A . G 6 HOH 94 2095 2095 HOH HOH A . G 6 HOH 95 2096 2096 HOH HOH A . G 6 HOH 96 2097 2097 HOH HOH A . G 6 HOH 97 2098 2098 HOH HOH A . G 6 HOH 98 2099 2099 HOH HOH A . G 6 HOH 99 2100 2100 HOH HOH A . G 6 HOH 100 2101 2101 HOH HOH A . G 6 HOH 101 2102 2102 HOH HOH A . G 6 HOH 102 2103 2103 HOH HOH A . G 6 HOH 103 2104 2104 HOH HOH A . G 6 HOH 104 2105 2105 HOH HOH A . G 6 HOH 105 2106 2106 HOH HOH A . G 6 HOH 106 2107 2107 HOH HOH A . G 6 HOH 107 2108 2108 HOH HOH A . G 6 HOH 108 2109 2109 HOH HOH A . G 6 HOH 109 2110 2110 HOH HOH A . G 6 HOH 110 2111 2111 HOH HOH A . G 6 HOH 111 2112 2112 HOH HOH A . G 6 HOH 112 2113 2113 HOH HOH A . G 6 HOH 113 2114 2114 HOH HOH A . G 6 HOH 114 2115 2115 HOH HOH A . G 6 HOH 115 2116 2116 HOH HOH A . G 6 HOH 116 2117 2117 HOH HOH A . G 6 HOH 117 2118 2118 HOH HOH A . G 6 HOH 118 2119 2119 HOH HOH A . G 6 HOH 119 2120 2120 HOH HOH A . G 6 HOH 120 2121 2121 HOH HOH A . G 6 HOH 121 2122 2122 HOH HOH A . G 6 HOH 122 2123 2123 HOH HOH A . G 6 HOH 123 2124 2124 HOH HOH A . G 6 HOH 124 2125 2125 HOH HOH A . G 6 HOH 125 2126 2126 HOH HOH A . G 6 HOH 126 2127 2127 HOH HOH A . G 6 HOH 127 2128 2128 HOH HOH A . G 6 HOH 128 2129 2129 HOH HOH A . G 6 HOH 129 2130 2130 HOH HOH A . G 6 HOH 130 2131 2131 HOH HOH A . G 6 HOH 131 2132 2132 HOH HOH A . G 6 HOH 132 2133 2133 HOH HOH A . G 6 HOH 133 2134 2134 HOH HOH A . G 6 HOH 134 2135 2135 HOH HOH A . G 6 HOH 135 2136 2136 HOH HOH A . G 6 HOH 136 2137 2137 HOH HOH A . G 6 HOH 137 2138 2138 HOH HOH A . G 6 HOH 138 2139 2139 HOH HOH A . G 6 HOH 139 2140 2140 HOH HOH A . G 6 HOH 140 2141 2141 HOH HOH A . G 6 HOH 141 2142 2142 HOH HOH A . G 6 HOH 142 2143 2143 HOH HOH A . G 6 HOH 143 2144 2144 HOH HOH A . G 6 HOH 144 2145 2145 HOH HOH A . G 6 HOH 145 2146 2146 HOH HOH A . G 6 HOH 146 2147 2147 HOH HOH A . G 6 HOH 147 2148 2148 HOH HOH A . G 6 HOH 148 2149 2149 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.7.0032 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 5AB8 _cell.length_a 43.160 _cell.length_b 43.160 _cell.length_c 212.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AB8 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # _exptl.entry_id 5AB8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.62 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.0 M NA-FORMATE, 0.1 M NA-ACETATE PH 4.6, T=277 K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AB8 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 53.23 _reflns.d_resolution_high 1.53 _reflns.number_obs 18944 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.53 _reflns_shell.d_res_low 1.61 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.40 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.80 _reflns_shell.pdbx_redundancy 15.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AB8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17851 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.07 _refine.ls_d_res_high 1.53 _refine.ls_percent_reflns_obs 99.84 _refine.ls_R_factor_obs 0.14384 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14044 _refine.ls_R_factor_R_free 0.20917 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 969 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.980 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 27.522 _refine.aniso_B[1][1] 0.07 _refine.aniso_B[2][2] 0.07 _refine.aniso_B[3][3] -0.24 _refine.aniso_B[1][2] 0.07 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUES 129-136 WERE NOT LOCATED IN THE EXPERIMENT THE HEME VINYL GROUP WAS COVALENTLY MODIFIED AT THE CBB ATOM. THE MODIFICATION HAS NOT BEEN MODELED IN THE STRUCTURE ; _refine.pdbx_starting_model 'PDB ENTRY 1IDR' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.081 _refine.pdbx_overall_ESU_R_Free 0.081 _refine.overall_SU_ML 0.063 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.090 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 871 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 1081 _refine_hist.d_res_high 1.53 _refine_hist.d_res_low 33.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.019 ? 971 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 919 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.508 2.027 ? 1330 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.856 3.000 ? 2108 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.693 5.000 ? 120 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.028 24.167 ? 36 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.292 15.000 ? 140 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.784 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 148 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.021 ? 1102 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.010 0.020 ? 223 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.902 2.473 ? 471 'X-RAY DIFFRACTION' ? r_mcbond_other 3.834 2.467 ? 471 'X-RAY DIFFRACTION' ? r_mcangle_it 4.311 3.694 ? 587 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.204 2.721 ? 498 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.353 3.000 ? 1885 'X-RAY DIFFRACTION' ? r_sphericity_free 32.976 5.000 ? 47 'X-RAY DIFFRACTION' ? r_sphericity_bonded 12.829 5.000 ? 1968 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.531 _refine_ls_shell.d_res_low 1.571 _refine_ls_shell.number_reflns_R_work 1257 _refine_ls_shell.R_factor_R_work 0.284 _refine_ls_shell.percent_reflns_obs 99.33 _refine_ls_shell.R_factor_R_free 0.354 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 5AB8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5AB8 _struct.title 'High resolution X-ray structure of the N-terminal truncated form (residues 1-11) of Mycobacterium tuberculosis HbN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AB8 _struct_keywords.pdbx_keywords 'OXYGEN TRANSPORT' _struct_keywords.text 'OXYGEN TRANSPORT, TRUNCATED HEMOGLOBINS, 2/2 HEMOGLOBINS, GLOBIN DYNAMICS, BACTERIAL GLOBINS, HEME/LIGAND TUNNELING, NO DIOXYGENASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRHBN_MYCTU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P9WN25 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5AB8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P9WN25 _struct_ref_seq.db_align_beg 12 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 136 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 12 _struct_ref_seq.pdbx_auth_seq_align_end 136 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6230 ? 1 MORE -66.3 ? 1 'SSA (A^2)' 10430 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5000000000 -0.8660254038 0.0000000000 21.5800000000 -0.8660254038 -0.5000000000 0.0000000000 37.3776564273 0.0000000000 0.0000000000 -1.0000000000 -35.4833333333 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? GLY A 9 ? SER A 14 GLY A 20 1 ? 7 HELX_P HELX_P2 2 GLY A 9 ? ASP A 28 ? GLY A 20 ASP A 39 1 ? 20 HELX_P HELX_P3 3 LEU A 31 ? SER A 36 ? LEU A 42 SER A 47 5 ? 6 HELX_P HELX_P4 4 ASN A 39 ? LEU A 55 ? ASN A 50 LEU A 66 1 ? 17 HELX_P HELX_P5 5 PRO A 65 ? GLN A 71 ? PRO A 76 GLN A 82 1 ? 7 HELX_P HELX_P6 6 THR A 76 ? ALA A 94 ? THR A 87 ALA A 105 1 ? 19 HELX_P HELX_P7 7 PRO A 97 ? VAL A 113 ? PRO A 108 VAL A 124 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 70 NE2 ? ? ? 1_555 B HEM . FE ? ? A HIS 81 A HEM 144 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc2 metalc ? ? B HEM . FE ? ? ? 1_555 C FMT . O2 ? ? A HEM 144 A FMT 1129 1_555 ? ? ? ? ? ? ? 1.855 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 70 ? A HIS 81 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NA ? B HEM . ? A HEM 144 ? 1_555 90.9 ? 2 NE2 ? A HIS 70 ? A HIS 81 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NB ? B HEM . ? A HEM 144 ? 1_555 87.7 ? 3 NA ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NB ? B HEM . ? A HEM 144 ? 1_555 88.7 ? 4 NE2 ? A HIS 70 ? A HIS 81 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NC ? B HEM . ? A HEM 144 ? 1_555 90.3 ? 5 NA ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NC ? B HEM . ? A HEM 144 ? 1_555 178.7 ? 6 NB ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NC ? B HEM . ? A HEM 144 ? 1_555 90.7 ? 7 NE2 ? A HIS 70 ? A HIS 81 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 ND ? B HEM . ? A HEM 144 ? 1_555 93.7 ? 8 NA ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 ND ? B HEM . ? A HEM 144 ? 1_555 91.6 ? 9 NB ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 ND ? B HEM . ? A HEM 144 ? 1_555 178.6 ? 10 NC ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 ND ? B HEM . ? A HEM 144 ? 1_555 89.0 ? 11 NE2 ? A HIS 70 ? A HIS 81 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 O2 ? C FMT . ? A FMT 1129 ? 1_555 176.6 ? 12 NA ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 O2 ? C FMT . ? A FMT 1129 ? 1_555 85.8 ? 13 NB ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 O2 ? C FMT . ? A FMT 1129 ? 1_555 91.7 ? 14 NC ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 O2 ? C FMT . ? A FMT 1129 ? 1_555 93.1 ? 15 ND ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 O2 ? C FMT . ? A FMT 1129 ? 1_555 87.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEM 144 ? 24 'BINDING SITE FOR RESIDUE HEM A 144' AC2 Software A FMT 1129 ? 4 'BINDING SITE FOR RESIDUE FMT A 1129' AC3 Software A ACT 1130 ? 3 'BINDING SITE FOR RESIDUE ACT A 1130' AC4 Software A GOL 1131 ? 10 'BINDING SITE FOR RESIDUE GOL A 1131' AC5 Software A GOL 1132 ? 9 'BINDING SITE FOR RESIDUE GOL A 1132' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 24 PHE A 34 ? PHE A 45 . ? 1_555 ? 2 AC1 24 PHE A 35 ? PHE A 46 . ? 1_555 ? 3 AC1 24 THR A 38 ? THR A 49 . ? 1_555 ? 4 AC1 24 ARG A 42 ? ARG A 53 . ? 1_555 ? 5 AC1 24 LEU A 43 ? LEU A 54 . ? 1_555 ? 6 AC1 24 GLN A 47 ? GLN A 58 . ? 1_555 ? 7 AC1 24 PHE A 50 ? PHE A 61 . ? 1_555 ? 8 AC1 24 PRO A 58 ? PRO A 69 . ? 8_665 ? 9 AC1 24 TYR A 61 ? TYR A 72 . ? 1_555 ? 10 AC1 24 GLY A 63 ? GLY A 74 . ? 1_555 ? 11 AC1 24 ALA A 64 ? ALA A 75 . ? 1_555 ? 12 AC1 24 MET A 66 ? MET A 77 . ? 1_555 ? 13 AC1 24 VAL A 69 ? VAL A 80 . ? 1_555 ? 14 AC1 24 HIS A 70 ? HIS A 81 . ? 1_555 ? 15 AC1 24 ARG A 73 ? ARG A 84 . ? 1_555 ? 16 AC1 24 ILE A 75 ? ILE A 86 . ? 1_555 ? 17 AC1 24 PHE A 80 ? PHE A 91 . ? 1_555 ? 18 AC1 24 VAL A 83 ? VAL A 94 . ? 1_555 ? 19 AC1 24 ALA A 112 ? ALA A 123 . ? 1_555 ? 20 AC1 24 FMT C . ? FMT A 1129 . ? 1_555 ? 21 AC1 24 GOL E . ? GOL A 1131 . ? 1_555 ? 22 AC1 24 HOH G . ? HOH A 2089 . ? 1_555 ? 23 AC1 24 HOH G . ? HOH A 2090 . ? 1_555 ? 24 AC1 24 HOH G . ? HOH A 2117 . ? 1_555 ? 25 AC2 4 TYR A 22 ? TYR A 33 . ? 1_555 ? 26 AC2 4 PHE A 35 ? PHE A 46 . ? 1_555 ? 27 AC2 4 GLN A 47 ? GLN A 58 . ? 1_555 ? 28 AC2 4 HEM B . ? HEM A 144 . ? 1_555 ? 29 AC3 3 PHE A 50 ? PHE A 61 . ? 1_555 ? 30 AC3 3 HOH G . ? HOH A 2148 . ? 1_555 ? 31 AC3 3 HOH G . ? HOH A 2149 . ? 1_555 ? 32 AC4 10 GLY A 37 ? GLY A 48 . ? 1_555 ? 33 AC4 10 THR A 38 ? THR A 49 . ? 1_555 ? 34 AC4 10 ASN A 39 ? ASN A 50 . ? 1_555 ? 35 AC4 10 ARG A 42 ? ARG A 53 . ? 1_555 ? 36 AC4 10 GLY A 56 ? GLY A 67 . ? 8_665 ? 37 AC4 10 PRO A 58 ? PRO A 69 . ? 8_665 ? 38 AC4 10 HEM B . ? HEM A 144 . ? 1_555 ? 39 AC4 10 HOH G . ? HOH A 2079 . ? 1_555 ? 40 AC4 10 HOH G . ? HOH A 2083 . ? 1_555 ? 41 AC4 10 HOH G . ? HOH A 2118 . ? 1_555 ? 42 AC5 9 LYS A 67 ? LYS A 78 . ? 1_555 ? 43 AC5 9 HIS A 70 ? HIS A 81 . ? 1_555 ? 44 AC5 9 GLN A 71 ? GLN A 82 . ? 1_555 ? 45 AC5 9 HIS A 78 ? HIS A 89 . ? 10_664 ? 46 AC5 9 HOH G . ? HOH A 2107 . ? 1_555 ? 47 AC5 9 HOH G . ? HOH A 2110 . ? 1_555 ? 48 AC5 9 HOH G . ? HOH A 2113 . ? 1_555 ? 49 AC5 9 HOH G . ? HOH A 2121 . ? 1_555 ? 50 AC5 9 HOH G . ? HOH A 2145 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 50 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2081 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_entry_details.entry_id 5AB8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;HEME (HEM): THE HEME VYNIL GROUP IS COVALENTLY MODIFIED AT THE CBB ATOM. THE MODIFICATION HAS NOT BEEN MODELLED IN THE STRUCTURE. ; _pdbx_entry_details.sequence_details ;OUR PROTEIN CONSTRUCT START FROM RESIDUE 12. RESIDUES FROM 129 TO 136 WERE NOT LOCATED IN THE EXPERIMENTAL MAP. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 129 ? A GLY 118 2 1 Y 1 A GLU 130 ? A GLU 119 3 1 Y 1 A SER 131 ? A SER 120 4 1 Y 1 A THR 132 ? A THR 121 5 1 Y 1 A THR 133 ? A THR 122 6 1 Y 1 A ALA 134 ? A ALA 123 7 1 Y 1 A PRO 135 ? A PRO 124 8 1 Y 1 A VAL 136 ? A VAL 125 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 FMT C C N N 81 FMT O1 O N N 82 FMT O2 O N N 83 FMT H H N N 84 FMT HO2 H N N 85 GLN N N N N 86 GLN CA C N S 87 GLN C C N N 88 GLN O O N N 89 GLN CB C N N 90 GLN CG C N N 91 GLN CD C N N 92 GLN OE1 O N N 93 GLN NE2 N N N 94 GLN OXT O N N 95 GLN H H N N 96 GLN H2 H N N 97 GLN HA H N N 98 GLN HB2 H N N 99 GLN HB3 H N N 100 GLN HG2 H N N 101 GLN HG3 H N N 102 GLN HE21 H N N 103 GLN HE22 H N N 104 GLN HXT H N N 105 GLU N N N N 106 GLU CA C N S 107 GLU C C N N 108 GLU O O N N 109 GLU CB C N N 110 GLU CG C N N 111 GLU CD C N N 112 GLU OE1 O N N 113 GLU OE2 O N N 114 GLU OXT O N N 115 GLU H H N N 116 GLU H2 H N N 117 GLU HA H N N 118 GLU HB2 H N N 119 GLU HB3 H N N 120 GLU HG2 H N N 121 GLU HG3 H N N 122 GLU HE2 H N N 123 GLU HXT H N N 124 GLY N N N N 125 GLY CA C N N 126 GLY C C N N 127 GLY O O N N 128 GLY OXT O N N 129 GLY H H N N 130 GLY H2 H N N 131 GLY HA2 H N N 132 GLY HA3 H N N 133 GLY HXT H N N 134 GOL C1 C N N 135 GOL O1 O N N 136 GOL C2 C N N 137 GOL O2 O N N 138 GOL C3 C N N 139 GOL O3 O N N 140 GOL H11 H N N 141 GOL H12 H N N 142 GOL HO1 H N N 143 GOL H2 H N N 144 GOL HO2 H N N 145 GOL H31 H N N 146 GOL H32 H N N 147 GOL HO3 H N N 148 HEM CHA C N N 149 HEM CHB C N N 150 HEM CHC C N N 151 HEM CHD C N N 152 HEM C1A C Y N 153 HEM C2A C Y N 154 HEM C3A C Y N 155 HEM C4A C Y N 156 HEM CMA C N N 157 HEM CAA C N N 158 HEM CBA C N N 159 HEM CGA C N N 160 HEM O1A O N N 161 HEM O2A O N N 162 HEM C1B C N N 163 HEM C2B C N N 164 HEM C3B C N N 165 HEM C4B C N N 166 HEM CMB C N N 167 HEM CAB C N N 168 HEM CBB C N N 169 HEM C1C C Y N 170 HEM C2C C Y N 171 HEM C3C C Y N 172 HEM C4C C Y N 173 HEM CMC C N N 174 HEM CAC C N N 175 HEM CBC C N N 176 HEM C1D C N N 177 HEM C2D C N N 178 HEM C3D C N N 179 HEM C4D C N N 180 HEM CMD C N N 181 HEM CAD C N N 182 HEM CBD C N N 183 HEM CGD C N N 184 HEM O1D O N N 185 HEM O2D O N N 186 HEM NA N Y N 187 HEM NB N N N 188 HEM NC N Y N 189 HEM ND N N N 190 HEM FE FE N N 191 HEM HHB H N N 192 HEM HHC H N N 193 HEM HHD H N N 194 HEM HMA H N N 195 HEM HMAA H N N 196 HEM HMAB H N N 197 HEM HAA H N N 198 HEM HAAA H N N 199 HEM HBA H N N 200 HEM HBAA H N N 201 HEM HMB H N N 202 HEM HMBA H N N 203 HEM HMBB H N N 204 HEM HAB H N N 205 HEM HBB H N N 206 HEM HBBA H N N 207 HEM HMC H N N 208 HEM HMCA H N N 209 HEM HMCB H N N 210 HEM HAC H N N 211 HEM HBC H N N 212 HEM HBCA H N N 213 HEM HMD H N N 214 HEM HMDA H N N 215 HEM HMDB H N N 216 HEM HAD H N N 217 HEM HADA H N N 218 HEM HBD H N N 219 HEM HBDA H N N 220 HEM H2A H N N 221 HEM H2D H N N 222 HEM HHA H N N 223 HIS N N N N 224 HIS CA C N S 225 HIS C C N N 226 HIS O O N N 227 HIS CB C N N 228 HIS CG C Y N 229 HIS ND1 N Y N 230 HIS CD2 C Y N 231 HIS CE1 C Y N 232 HIS NE2 N Y N 233 HIS OXT O N N 234 HIS H H N N 235 HIS H2 H N N 236 HIS HA H N N 237 HIS HB2 H N N 238 HIS HB3 H N N 239 HIS HD1 H N N 240 HIS HD2 H N N 241 HIS HE1 H N N 242 HIS HE2 H N N 243 HIS HXT H N N 244 HOH O O N N 245 HOH H1 H N N 246 HOH H2 H N N 247 ILE N N N N 248 ILE CA C N S 249 ILE C C N N 250 ILE O O N N 251 ILE CB C N S 252 ILE CG1 C N N 253 ILE CG2 C N N 254 ILE CD1 C N N 255 ILE OXT O N N 256 ILE H H N N 257 ILE H2 H N N 258 ILE HA H N N 259 ILE HB H N N 260 ILE HG12 H N N 261 ILE HG13 H N N 262 ILE HG21 H N N 263 ILE HG22 H N N 264 ILE HG23 H N N 265 ILE HD11 H N N 266 ILE HD12 H N N 267 ILE HD13 H N N 268 ILE HXT H N N 269 LEU N N N N 270 LEU CA C N S 271 LEU C C N N 272 LEU O O N N 273 LEU CB C N N 274 LEU CG C N N 275 LEU CD1 C N N 276 LEU CD2 C N N 277 LEU OXT O N N 278 LEU H H N N 279 LEU H2 H N N 280 LEU HA H N N 281 LEU HB2 H N N 282 LEU HB3 H N N 283 LEU HG H N N 284 LEU HD11 H N N 285 LEU HD12 H N N 286 LEU HD13 H N N 287 LEU HD21 H N N 288 LEU HD22 H N N 289 LEU HD23 H N N 290 LEU HXT H N N 291 LYS N N N N 292 LYS CA C N S 293 LYS C C N N 294 LYS O O N N 295 LYS CB C N N 296 LYS CG C N N 297 LYS CD C N N 298 LYS CE C N N 299 LYS NZ N N N 300 LYS OXT O N N 301 LYS H H N N 302 LYS H2 H N N 303 LYS HA H N N 304 LYS HB2 H N N 305 LYS HB3 H N N 306 LYS HG2 H N N 307 LYS HG3 H N N 308 LYS HD2 H N N 309 LYS HD3 H N N 310 LYS HE2 H N N 311 LYS HE3 H N N 312 LYS HZ1 H N N 313 LYS HZ2 H N N 314 LYS HZ3 H N N 315 LYS HXT H N N 316 MET N N N N 317 MET CA C N S 318 MET C C N N 319 MET O O N N 320 MET CB C N N 321 MET CG C N N 322 MET SD S N N 323 MET CE C N N 324 MET OXT O N N 325 MET H H N N 326 MET H2 H N N 327 MET HA H N N 328 MET HB2 H N N 329 MET HB3 H N N 330 MET HG2 H N N 331 MET HG3 H N N 332 MET HE1 H N N 333 MET HE2 H N N 334 MET HE3 H N N 335 MET HXT H N N 336 PHE N N N N 337 PHE CA C N S 338 PHE C C N N 339 PHE O O N N 340 PHE CB C N N 341 PHE CG C Y N 342 PHE CD1 C Y N 343 PHE CD2 C Y N 344 PHE CE1 C Y N 345 PHE CE2 C Y N 346 PHE CZ C Y N 347 PHE OXT O N N 348 PHE H H N N 349 PHE H2 H N N 350 PHE HA H N N 351 PHE HB2 H N N 352 PHE HB3 H N N 353 PHE HD1 H N N 354 PHE HD2 H N N 355 PHE HE1 H N N 356 PHE HE2 H N N 357 PHE HZ H N N 358 PHE HXT H N N 359 PRO N N N N 360 PRO CA C N S 361 PRO C C N N 362 PRO O O N N 363 PRO CB C N N 364 PRO CG C N N 365 PRO CD C N N 366 PRO OXT O N N 367 PRO H H N N 368 PRO HA H N N 369 PRO HB2 H N N 370 PRO HB3 H N N 371 PRO HG2 H N N 372 PRO HG3 H N N 373 PRO HD2 H N N 374 PRO HD3 H N N 375 PRO HXT H N N 376 SER N N N N 377 SER CA C N S 378 SER C C N N 379 SER O O N N 380 SER CB C N N 381 SER OG O N N 382 SER OXT O N N 383 SER H H N N 384 SER H2 H N N 385 SER HA H N N 386 SER HB2 H N N 387 SER HB3 H N N 388 SER HG H N N 389 SER HXT H N N 390 THR N N N N 391 THR CA C N S 392 THR C C N N 393 THR O O N N 394 THR CB C N R 395 THR OG1 O N N 396 THR CG2 C N N 397 THR OXT O N N 398 THR H H N N 399 THR H2 H N N 400 THR HA H N N 401 THR HB H N N 402 THR HG1 H N N 403 THR HG21 H N N 404 THR HG22 H N N 405 THR HG23 H N N 406 THR HXT H N N 407 TYR N N N N 408 TYR CA C N S 409 TYR C C N N 410 TYR O O N N 411 TYR CB C N N 412 TYR CG C Y N 413 TYR CD1 C Y N 414 TYR CD2 C Y N 415 TYR CE1 C Y N 416 TYR CE2 C Y N 417 TYR CZ C Y N 418 TYR OH O N N 419 TYR OXT O N N 420 TYR H H N N 421 TYR H2 H N N 422 TYR HA H N N 423 TYR HB2 H N N 424 TYR HB3 H N N 425 TYR HD1 H N N 426 TYR HD2 H N N 427 TYR HE1 H N N 428 TYR HE2 H N N 429 TYR HH H N N 430 TYR HXT H N N 431 VAL N N N N 432 VAL CA C N S 433 VAL C C N N 434 VAL O O N N 435 VAL CB C N N 436 VAL CG1 C N N 437 VAL CG2 C N N 438 VAL OXT O N N 439 VAL H H N N 440 VAL H2 H N N 441 VAL HA H N N 442 VAL HB H N N 443 VAL HG11 H N N 444 VAL HG12 H N N 445 VAL HG13 H N N 446 VAL HG21 H N N 447 VAL HG22 H N N 448 VAL HG23 H N N 449 VAL HXT H N N 450 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 FMT C O1 doub N N 76 FMT C O2 sing N N 77 FMT C H sing N N 78 FMT O2 HO2 sing N N 79 GLN N CA sing N N 80 GLN N H sing N N 81 GLN N H2 sing N N 82 GLN CA C sing N N 83 GLN CA CB sing N N 84 GLN CA HA sing N N 85 GLN C O doub N N 86 GLN C OXT sing N N 87 GLN CB CG sing N N 88 GLN CB HB2 sing N N 89 GLN CB HB3 sing N N 90 GLN CG CD sing N N 91 GLN CG HG2 sing N N 92 GLN CG HG3 sing N N 93 GLN CD OE1 doub N N 94 GLN CD NE2 sing N N 95 GLN NE2 HE21 sing N N 96 GLN NE2 HE22 sing N N 97 GLN OXT HXT sing N N 98 GLU N CA sing N N 99 GLU N H sing N N 100 GLU N H2 sing N N 101 GLU CA C sing N N 102 GLU CA CB sing N N 103 GLU CA HA sing N N 104 GLU C O doub N N 105 GLU C OXT sing N N 106 GLU CB CG sing N N 107 GLU CB HB2 sing N N 108 GLU CB HB3 sing N N 109 GLU CG CD sing N N 110 GLU CG HG2 sing N N 111 GLU CG HG3 sing N N 112 GLU CD OE1 doub N N 113 GLU CD OE2 sing N N 114 GLU OE2 HE2 sing N N 115 GLU OXT HXT sing N N 116 GLY N CA sing N N 117 GLY N H sing N N 118 GLY N H2 sing N N 119 GLY CA C sing N N 120 GLY CA HA2 sing N N 121 GLY CA HA3 sing N N 122 GLY C O doub N N 123 GLY C OXT sing N N 124 GLY OXT HXT sing N N 125 GOL C1 O1 sing N N 126 GOL C1 C2 sing N N 127 GOL C1 H11 sing N N 128 GOL C1 H12 sing N N 129 GOL O1 HO1 sing N N 130 GOL C2 O2 sing N N 131 GOL C2 C3 sing N N 132 GOL C2 H2 sing N N 133 GOL O2 HO2 sing N N 134 GOL C3 O3 sing N N 135 GOL C3 H31 sing N N 136 GOL C3 H32 sing N N 137 GOL O3 HO3 sing N N 138 HEM CHA C1A sing N N 139 HEM CHA C4D doub N N 140 HEM CHA HHA sing N N 141 HEM CHB C4A sing N N 142 HEM CHB C1B doub N N 143 HEM CHB HHB sing N N 144 HEM CHC C4B sing N N 145 HEM CHC C1C doub N N 146 HEM CHC HHC sing N N 147 HEM CHD C4C doub N N 148 HEM CHD C1D sing N N 149 HEM CHD HHD sing N N 150 HEM C1A C2A doub Y N 151 HEM C1A NA sing Y N 152 HEM C2A C3A sing Y N 153 HEM C2A CAA sing N N 154 HEM C3A C4A doub Y N 155 HEM C3A CMA sing N N 156 HEM C4A NA sing Y N 157 HEM CMA HMA sing N N 158 HEM CMA HMAA sing N N 159 HEM CMA HMAB sing N N 160 HEM CAA CBA sing N N 161 HEM CAA HAA sing N N 162 HEM CAA HAAA sing N N 163 HEM CBA CGA sing N N 164 HEM CBA HBA sing N N 165 HEM CBA HBAA sing N N 166 HEM CGA O1A doub N N 167 HEM CGA O2A sing N N 168 HEM C1B C2B sing N N 169 HEM C1B NB sing N N 170 HEM C2B C3B doub N N 171 HEM C2B CMB sing N N 172 HEM C3B C4B sing N N 173 HEM C3B CAB sing N N 174 HEM C4B NB doub N N 175 HEM CMB HMB sing N N 176 HEM CMB HMBA sing N N 177 HEM CMB HMBB sing N N 178 HEM CAB CBB doub N N 179 HEM CAB HAB sing N N 180 HEM CBB HBB sing N N 181 HEM CBB HBBA sing N N 182 HEM C1C C2C sing Y N 183 HEM C1C NC sing Y N 184 HEM C2C C3C doub Y N 185 HEM C2C CMC sing N N 186 HEM C3C C4C sing Y N 187 HEM C3C CAC sing N N 188 HEM C4C NC sing Y N 189 HEM CMC HMC sing N N 190 HEM CMC HMCA sing N N 191 HEM CMC HMCB sing N N 192 HEM CAC CBC doub N N 193 HEM CAC HAC sing N N 194 HEM CBC HBC sing N N 195 HEM CBC HBCA sing N N 196 HEM C1D C2D sing N N 197 HEM C1D ND doub N N 198 HEM C2D C3D doub N N 199 HEM C2D CMD sing N N 200 HEM C3D C4D sing N N 201 HEM C3D CAD sing N N 202 HEM C4D ND sing N N 203 HEM CMD HMD sing N N 204 HEM CMD HMDA sing N N 205 HEM CMD HMDB sing N N 206 HEM CAD CBD sing N N 207 HEM CAD HAD sing N N 208 HEM CAD HADA sing N N 209 HEM CBD CGD sing N N 210 HEM CBD HBD sing N N 211 HEM CBD HBDA sing N N 212 HEM CGD O1D doub N N 213 HEM CGD O2D sing N N 214 HEM O2A H2A sing N N 215 HEM O2D H2D sing N N 216 HEM FE NA sing N N 217 HEM FE NB sing N N 218 HEM FE NC sing N N 219 HEM FE ND sing N N 220 HIS N CA sing N N 221 HIS N H sing N N 222 HIS N H2 sing N N 223 HIS CA C sing N N 224 HIS CA CB sing N N 225 HIS CA HA sing N N 226 HIS C O doub N N 227 HIS C OXT sing N N 228 HIS CB CG sing N N 229 HIS CB HB2 sing N N 230 HIS CB HB3 sing N N 231 HIS CG ND1 sing Y N 232 HIS CG CD2 doub Y N 233 HIS ND1 CE1 doub Y N 234 HIS ND1 HD1 sing N N 235 HIS CD2 NE2 sing Y N 236 HIS CD2 HD2 sing N N 237 HIS CE1 NE2 sing Y N 238 HIS CE1 HE1 sing N N 239 HIS NE2 HE2 sing N N 240 HIS OXT HXT sing N N 241 HOH O H1 sing N N 242 HOH O H2 sing N N 243 ILE N CA sing N N 244 ILE N H sing N N 245 ILE N H2 sing N N 246 ILE CA C sing N N 247 ILE CA CB sing N N 248 ILE CA HA sing N N 249 ILE C O doub N N 250 ILE C OXT sing N N 251 ILE CB CG1 sing N N 252 ILE CB CG2 sing N N 253 ILE CB HB sing N N 254 ILE CG1 CD1 sing N N 255 ILE CG1 HG12 sing N N 256 ILE CG1 HG13 sing N N 257 ILE CG2 HG21 sing N N 258 ILE CG2 HG22 sing N N 259 ILE CG2 HG23 sing N N 260 ILE CD1 HD11 sing N N 261 ILE CD1 HD12 sing N N 262 ILE CD1 HD13 sing N N 263 ILE OXT HXT sing N N 264 LEU N CA sing N N 265 LEU N H sing N N 266 LEU N H2 sing N N 267 LEU CA C sing N N 268 LEU CA CB sing N N 269 LEU CA HA sing N N 270 LEU C O doub N N 271 LEU C OXT sing N N 272 LEU CB CG sing N N 273 LEU CB HB2 sing N N 274 LEU CB HB3 sing N N 275 LEU CG CD1 sing N N 276 LEU CG CD2 sing N N 277 LEU CG HG sing N N 278 LEU CD1 HD11 sing N N 279 LEU CD1 HD12 sing N N 280 LEU CD1 HD13 sing N N 281 LEU CD2 HD21 sing N N 282 LEU CD2 HD22 sing N N 283 LEU CD2 HD23 sing N N 284 LEU OXT HXT sing N N 285 LYS N CA sing N N 286 LYS N H sing N N 287 LYS N H2 sing N N 288 LYS CA C sing N N 289 LYS CA CB sing N N 290 LYS CA HA sing N N 291 LYS C O doub N N 292 LYS C OXT sing N N 293 LYS CB CG sing N N 294 LYS CB HB2 sing N N 295 LYS CB HB3 sing N N 296 LYS CG CD sing N N 297 LYS CG HG2 sing N N 298 LYS CG HG3 sing N N 299 LYS CD CE sing N N 300 LYS CD HD2 sing N N 301 LYS CD HD3 sing N N 302 LYS CE NZ sing N N 303 LYS CE HE2 sing N N 304 LYS CE HE3 sing N N 305 LYS NZ HZ1 sing N N 306 LYS NZ HZ2 sing N N 307 LYS NZ HZ3 sing N N 308 LYS OXT HXT sing N N 309 MET N CA sing N N 310 MET N H sing N N 311 MET N H2 sing N N 312 MET CA C sing N N 313 MET CA CB sing N N 314 MET CA HA sing N N 315 MET C O doub N N 316 MET C OXT sing N N 317 MET CB CG sing N N 318 MET CB HB2 sing N N 319 MET CB HB3 sing N N 320 MET CG SD sing N N 321 MET CG HG2 sing N N 322 MET CG HG3 sing N N 323 MET SD CE sing N N 324 MET CE HE1 sing N N 325 MET CE HE2 sing N N 326 MET CE HE3 sing N N 327 MET OXT HXT sing N N 328 PHE N CA sing N N 329 PHE N H sing N N 330 PHE N H2 sing N N 331 PHE CA C sing N N 332 PHE CA CB sing N N 333 PHE CA HA sing N N 334 PHE C O doub N N 335 PHE C OXT sing N N 336 PHE CB CG sing N N 337 PHE CB HB2 sing N N 338 PHE CB HB3 sing N N 339 PHE CG CD1 doub Y N 340 PHE CG CD2 sing Y N 341 PHE CD1 CE1 sing Y N 342 PHE CD1 HD1 sing N N 343 PHE CD2 CE2 doub Y N 344 PHE CD2 HD2 sing N N 345 PHE CE1 CZ doub Y N 346 PHE CE1 HE1 sing N N 347 PHE CE2 CZ sing Y N 348 PHE CE2 HE2 sing N N 349 PHE CZ HZ sing N N 350 PHE OXT HXT sing N N 351 PRO N CA sing N N 352 PRO N CD sing N N 353 PRO N H sing N N 354 PRO CA C sing N N 355 PRO CA CB sing N N 356 PRO CA HA sing N N 357 PRO C O doub N N 358 PRO C OXT sing N N 359 PRO CB CG sing N N 360 PRO CB HB2 sing N N 361 PRO CB HB3 sing N N 362 PRO CG CD sing N N 363 PRO CG HG2 sing N N 364 PRO CG HG3 sing N N 365 PRO CD HD2 sing N N 366 PRO CD HD3 sing N N 367 PRO OXT HXT sing N N 368 SER N CA sing N N 369 SER N H sing N N 370 SER N H2 sing N N 371 SER CA C sing N N 372 SER CA CB sing N N 373 SER CA HA sing N N 374 SER C O doub N N 375 SER C OXT sing N N 376 SER CB OG sing N N 377 SER CB HB2 sing N N 378 SER CB HB3 sing N N 379 SER OG HG sing N N 380 SER OXT HXT sing N N 381 THR N CA sing N N 382 THR N H sing N N 383 THR N H2 sing N N 384 THR CA C sing N N 385 THR CA CB sing N N 386 THR CA HA sing N N 387 THR C O doub N N 388 THR C OXT sing N N 389 THR CB OG1 sing N N 390 THR CB CG2 sing N N 391 THR CB HB sing N N 392 THR OG1 HG1 sing N N 393 THR CG2 HG21 sing N N 394 THR CG2 HG22 sing N N 395 THR CG2 HG23 sing N N 396 THR OXT HXT sing N N 397 TYR N CA sing N N 398 TYR N H sing N N 399 TYR N H2 sing N N 400 TYR CA C sing N N 401 TYR CA CB sing N N 402 TYR CA HA sing N N 403 TYR C O doub N N 404 TYR C OXT sing N N 405 TYR CB CG sing N N 406 TYR CB HB2 sing N N 407 TYR CB HB3 sing N N 408 TYR CG CD1 doub Y N 409 TYR CG CD2 sing Y N 410 TYR CD1 CE1 sing Y N 411 TYR CD1 HD1 sing N N 412 TYR CD2 CE2 doub Y N 413 TYR CD2 HD2 sing N N 414 TYR CE1 CZ doub Y N 415 TYR CE1 HE1 sing N N 416 TYR CE2 CZ sing Y N 417 TYR CE2 HE2 sing N N 418 TYR CZ OH sing N N 419 TYR OH HH sing N N 420 TYR OXT HXT sing N N 421 VAL N CA sing N N 422 VAL N H sing N N 423 VAL N H2 sing N N 424 VAL CA C sing N N 425 VAL CA CB sing N N 426 VAL CA HA sing N N 427 VAL C O doub N N 428 VAL C OXT sing N N 429 VAL CB CG1 sing N N 430 VAL CB CG2 sing N N 431 VAL CB HB sing N N 432 VAL CG1 HG11 sing N N 433 VAL CG1 HG12 sing N N 434 VAL CG1 HG13 sing N N 435 VAL CG2 HG21 sing N N 436 VAL CG2 HG22 sing N N 437 VAL CG2 HG23 sing N N 438 VAL OXT HXT sing N N 439 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1IDR _pdbx_initial_refinement_model.details 'PDB ENTRY 1IDR' # _atom_sites.entry_id 5AB8 _atom_sites.fract_transf_matrix[1][1] 0.023170 _atom_sites.fract_transf_matrix[1][2] 0.013377 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026754 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004697 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_