HEADER SIGNALING PROTEIN 05-AUG-15 5ABD TITLE CRYSTAL STRUCTURE OF VEGFR-1 DOMAIN 2 IN PRESENCE OF CU COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1; COMPND 3 CHAIN: E, I, X; COMPND 4 FRAGMENT: DOMAIN-2, RESIDUES 132-226; COMPND 5 SYNONYM: VEGFR-1, FMS-LIKE TYROSINE KINASE 1, FLT-1, TYROSINE-PROTEIN COMPND 6 KINASE FRT, TYROSINE-PROTEIN KINASE RECEPTOR FLT, FLT, VASCULAR COMPND 7 PERMEABILITY FACTOR RECEPTOR; COMPND 8 EC: 2.7.10.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA-GAMI PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS SIGNALING PROTEIN, VEGF, RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.-F.GAUCHER,M.-B.LASCOMBE,M.REILLE-SEROUSSI,N.GAGEY-EILSTEIN, AUTHOR 2 S.BROUSSY,P.CORIC,B.SEIJO,B.GAUTIER,W.-Q.LIU,F.HUGUENOT, AUTHOR 3 N.INGUIMBERT,S.BOUAZIZ,M.VIDAL,I.BROUTIN REVDAT 4 10-JAN-24 5ABD 1 REMARK LINK REVDAT 3 06-MAR-19 5ABD 1 REMARK ATOM REVDAT 2 01-FEB-17 5ABD 1 JRNL REVDAT 1 28-SEP-16 5ABD 0 JRNL AUTH J.-F.GAUCHER,M.REILLE-SEROUSSI,N.GAGEY-EILSTEIN,S.BROUSSY, JRNL AUTH 2 P.CORIC,B.SEIJO,M.-B.LASCOMBE,B.GAUTIER,W.-Q.LIU,F.HUGUENOT, JRNL AUTH 3 N.INGUIMBERT,S.BOUAZIZ,M.VIDAL,I.BROUTIN JRNL TITL BIOPHYSICAL STUDIES OF THE INDUCED DIMERIZATION OF HUMAN JRNL TITL 2 VEGF R RECEPTOR 1 BINDING DOMAIN BY DIVALENT METALS JRNL TITL 3 COMPETING WITH VEGF-A JRNL REF PLOS ONE V. 11 67755 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27942001 JRNL DOI 10.1371/JOURNAL.PONE.0167755 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9805 - 4.1496 1.00 2813 149 0.1424 0.1711 REMARK 3 2 4.1496 - 3.2940 1.00 2711 154 0.1556 0.2239 REMARK 3 3 3.2940 - 2.8777 1.00 2678 149 0.1876 0.2210 REMARK 3 4 2.8777 - 2.6146 1.00 2645 149 0.1965 0.2575 REMARK 3 5 2.6146 - 2.4272 1.00 2685 121 0.2101 0.2379 REMARK 3 6 2.4272 - 2.2841 1.00 2639 152 0.2112 0.2719 REMARK 3 7 2.2841 - 2.1698 1.00 2670 119 0.2277 0.2397 REMARK 3 8 2.1698 - 2.0753 1.00 2611 143 0.2525 0.2790 REMARK 3 9 2.0753 - 1.9954 0.99 2620 156 0.2803 0.3265 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 1.03 REMARK 3 B_SOL : 0.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2365 REMARK 3 ANGLE : 1.110 3210 REMARK 3 CHIRALITY : 0.043 372 REMARK 3 PLANARITY : 0.005 400 REMARK 3 DIHEDRAL : 14.324 899 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 30 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN E AND RESID 132:136 REMARK 3 ORIGIN FOR THE GROUP (A): -31.2499 21.8582 58.2557 REMARK 3 T TENSOR REMARK 3 T11: 0.3756 T22: 0.3671 REMARK 3 T33: 0.3861 T12: 0.0437 REMARK 3 T13: -0.0262 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.8254 L22: 7.0848 REMARK 3 L33: 8.2278 L12: 3.7290 REMARK 3 L13: -2.3497 L23: -0.3506 REMARK 3 S TENSOR REMARK 3 S11: 0.2258 S12: 0.5724 S13: 0.2633 REMARK 3 S21: 0.0474 S22: 0.1844 S23: 0.5311 REMARK 3 S31: -0.9329 S32: -0.9349 S33: -0.0100 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN E AND RESID 137:148 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4408 13.2095 57.6551 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.2874 REMARK 3 T33: 0.3251 T12: -0.0468 REMARK 3 T13: 0.0048 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.7665 L22: 1.8707 REMARK 3 L33: 2.8279 L12: -1.2027 REMARK 3 L13: 1.0549 L23: 0.3982 REMARK 3 S TENSOR REMARK 3 S11: -0.1544 S12: 0.0909 S13: 0.1754 REMARK 3 S21: 0.1161 S22: 0.0661 S23: -0.1082 REMARK 3 S31: -0.4062 S32: 0.1762 S33: -0.0060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN E AND RESID 149:162 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0833 19.8470 66.3399 REMARK 3 T TENSOR REMARK 3 T11: 0.4196 T22: 0.3364 REMARK 3 T33: 0.3101 T12: -0.0858 REMARK 3 T13: 0.0059 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 9.6958 L22: 4.1774 REMARK 3 L33: 4.7032 L12: -3.0231 REMARK 3 L13: 2.6274 L23: -1.0070 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: 0.1658 S13: 0.2565 REMARK 3 S21: 0.0923 S22: 0.0715 S23: -0.3317 REMARK 3 S31: -0.3567 S32: 0.6183 S33: -0.0216 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN E AND RESID 163:166 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2264 25.1723 68.1483 REMARK 3 T TENSOR REMARK 3 T11: 0.7029 T22: 0.5330 REMARK 3 T33: 0.5597 T12: 0.1571 REMARK 3 T13: -0.0256 T23: -0.1595 REMARK 3 L TENSOR REMARK 3 L11: 4.3409 L22: 5.5699 REMARK 3 L33: 3.5204 L12: 4.1462 REMARK 3 L13: -1.7413 L23: -0.4648 REMARK 3 S TENSOR REMARK 3 S11: 0.0979 S12: -0.0482 S13: 1.0224 REMARK 3 S21: 0.1579 S22: 0.1187 S23: 0.6384 REMARK 3 S31: -1.3891 S32: -0.7169 S33: -0.1658 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E AND RESID 167:175 REMARK 3 ORIGIN FOR THE GROUP (A): -25.4778 8.5226 70.0346 REMARK 3 T TENSOR REMARK 3 T11: 0.3799 T22: 0.4568 REMARK 3 T33: 0.3484 T12: 0.0199 REMARK 3 T13: 0.0961 T23: 0.1047 REMARK 3 L TENSOR REMARK 3 L11: 0.8066 L22: 6.4487 REMARK 3 L33: 2.1781 L12: -1.2230 REMARK 3 L13: -0.6255 L23: 1.9659 REMARK 3 S TENSOR REMARK 3 S11: -0.2732 S12: -0.8480 S13: -0.4032 REMARK 3 S21: 0.0634 S22: 0.1137 S23: 0.3716 REMARK 3 S31: 0.1355 S32: -0.0171 S33: -0.0276 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN E AND RESID 176:185 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9905 17.8792 77.2979 REMARK 3 T TENSOR REMARK 3 T11: 0.5455 T22: 0.6672 REMARK 3 T33: 0.3892 T12: -0.0503 REMARK 3 T13: -0.0416 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 1.8543 L22: 5.2130 REMARK 3 L33: 1.4135 L12: 1.6236 REMARK 3 L13: -0.7821 L23: 0.7935 REMARK 3 S TENSOR REMARK 3 S11: 0.1338 S12: -1.1175 S13: -0.2546 REMARK 3 S21: 0.9062 S22: 0.1332 S23: -0.7785 REMARK 3 S31: -0.0633 S32: 0.2365 S33: -0.1306 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN E AND RESID 186:190 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3543 26.4545 67.7439 REMARK 3 T TENSOR REMARK 3 T11: 0.5946 T22: 0.3054 REMARK 3 T33: 0.4434 T12: -0.0337 REMARK 3 T13: 0.0048 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 7.9453 L22: 5.6059 REMARK 3 L33: 7.2271 L12: -0.5045 REMARK 3 L13: -1.1949 L23: -0.2917 REMARK 3 S TENSOR REMARK 3 S11: -0.1604 S12: -0.1301 S13: 1.3059 REMARK 3 S21: 0.2041 S22: 0.1920 S23: 0.0276 REMARK 3 S31: -1.4165 S32: 0.3922 S33: -0.1457 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN E AND RESID 191:211 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0168 13.5886 69.7509 REMARK 3 T TENSOR REMARK 3 T11: 0.4068 T22: 0.3614 REMARK 3 T33: 0.2921 T12: 0.0051 REMARK 3 T13: -0.0275 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.2125 L22: 2.1155 REMARK 3 L33: 2.5044 L12: -0.4595 REMARK 3 L13: -0.3805 L23: 0.9582 REMARK 3 S TENSOR REMARK 3 S11: -0.2762 S12: -0.4964 S13: 0.0838 REMARK 3 S21: 0.4093 S22: 0.2910 S23: -0.2778 REMARK 3 S31: -0.1344 S32: 0.1855 S33: -0.0769 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN E AND RESID 212:219 REMARK 3 ORIGIN FOR THE GROUP (A): -34.3546 14.3597 61.2653 REMARK 3 T TENSOR REMARK 3 T11: 0.3009 T22: 0.3202 REMARK 3 T33: 0.3025 T12: -0.0512 REMARK 3 T13: -0.0084 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 9.6343 L22: 1.3691 REMARK 3 L33: 2.9824 L12: -0.8350 REMARK 3 L13: -1.5024 L23: 0.1342 REMARK 3 S TENSOR REMARK 3 S11: -0.1194 S12: -0.3525 S13: 0.2205 REMARK 3 S21: -0.1249 S22: 0.0079 S23: 0.1502 REMARK 3 S31: -0.0655 S32: -0.3002 S33: -0.0177 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN E AND RESID 220:226 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9000 10.0879 62.8917 REMARK 3 T TENSOR REMARK 3 T11: 0.3267 T22: 0.3772 REMARK 3 T33: 0.4525 T12: -0.0263 REMARK 3 T13: 0.0241 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 5.6957 L22: 5.9939 REMARK 3 L33: 5.9174 L12: -2.2193 REMARK 3 L13: 2.2143 L23: -1.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: -0.2327 S13: 0.1704 REMARK 3 S21: 0.0136 S22: 0.1774 S23: -1.1425 REMARK 3 S31: 0.0179 S32: 0.7110 S33: -0.0372 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN I AND RESID 132:136 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6058 -20.4026 86.8024 REMARK 3 T TENSOR REMARK 3 T11: 0.6556 T22: 0.6362 REMARK 3 T33: 0.5246 T12: 0.0728 REMARK 3 T13: -0.0590 T23: 0.1134 REMARK 3 L TENSOR REMARK 3 L11: 6.0873 L22: 1.9250 REMARK 3 L33: 7.3200 L12: -2.3033 REMARK 3 L13: 2.2511 L23: 1.0736 REMARK 3 S TENSOR REMARK 3 S11: -0.1914 S12: -0.7595 S13: -1.2235 REMARK 3 S21: 0.5933 S22: 0.2849 S23: 0.1135 REMARK 3 S31: 1.1723 S32: 0.2176 S33: 0.2292 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN I AND RESID 137:161 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5035 -9.4694 83.6541 REMARK 3 T TENSOR REMARK 3 T11: 0.4116 T22: 0.5258 REMARK 3 T33: 0.5625 T12: 0.1253 REMARK 3 T13: 0.0079 T23: 0.0714 REMARK 3 L TENSOR REMARK 3 L11: 1.0439 L22: 3.6799 REMARK 3 L33: 2.6834 L12: -0.2141 REMARK 3 L13: 0.4325 L23: 1.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: -0.4473 S13: -0.1701 REMARK 3 S21: 0.4480 S22: 0.0604 S23: -0.6721 REMARK 3 S31: 0.2299 S32: 0.5237 S33: 0.1067 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN I AND RESID 162:165 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0409 -25.3497 78.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.9322 T22: 0.6290 REMARK 3 T33: 0.8144 T12: 0.1250 REMARK 3 T13: -0.0087 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 7.4030 L22: 5.7865 REMARK 3 L33: 4.2489 L12: -5.6812 REMARK 3 L13: -3.2945 L23: 0.6264 REMARK 3 S TENSOR REMARK 3 S11: -0.1432 S12: -0.2182 S13: -1.2294 REMARK 3 S21: 0.1597 S22: 0.0731 S23: 0.3853 REMARK 3 S31: 1.4514 S32: -0.0084 S33: 0.2087 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN I AND RESID 166:178 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3675 -6.9561 74.3304 REMARK 3 T TENSOR REMARK 3 T11: 0.5003 T22: 0.6236 REMARK 3 T33: 0.3810 T12: 0.1158 REMARK 3 T13: -0.0045 T23: 0.1591 REMARK 3 L TENSOR REMARK 3 L11: 0.9591 L22: 2.1780 REMARK 3 L33: 2.1366 L12: 0.2241 REMARK 3 L13: -0.0247 L23: -0.0767 REMARK 3 S TENSOR REMARK 3 S11: 0.1565 S12: 0.7981 S13: 0.2603 REMARK 3 S21: -0.6798 S22: -0.1127 S23: 0.2428 REMARK 3 S31: 0.1937 S32: -0.4657 S33: 0.1146 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN I AND RESID 179:192 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1047 -16.7301 72.9986 REMARK 3 T TENSOR REMARK 3 T11: 0.7130 T22: 0.6578 REMARK 3 T33: 0.5760 T12: 0.2333 REMARK 3 T13: 0.1430 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 3.8218 L22: 2.7952 REMARK 3 L33: 5.2622 L12: 1.8459 REMARK 3 L13: -1.2053 L23: -0.2763 REMARK 3 S TENSOR REMARK 3 S11: 0.2469 S12: 0.6834 S13: -0.6127 REMARK 3 S21: -0.4570 S22: 0.1235 S23: -0.9465 REMARK 3 S31: 0.4197 S32: 0.0264 S33: 0.3332 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN I AND RESID 193:196 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5717 -10.5972 72.1115 REMARK 3 T TENSOR REMARK 3 T11: 0.8075 T22: 0.7119 REMARK 3 T33: 0.8557 T12: 0.1594 REMARK 3 T13: 0.3366 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 9.8141 L22: 6.2795 REMARK 3 L33: 6.6137 L12: -3.9589 REMARK 3 L13: 1.1218 L23: 4.6214 REMARK 3 S TENSOR REMARK 3 S11: -0.2101 S12: 0.5719 S13: 0.2728 REMARK 3 S21: -0.8367 S22: 0.2542 S23: -0.8921 REMARK 3 S31: -0.3473 S32: 0.8653 S33: 0.0897 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN I AND RESID 197:200 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7671 -0.6975 71.2339 REMARK 3 T TENSOR REMARK 3 T11: 0.8911 T22: 0.5938 REMARK 3 T33: 0.9168 T12: 0.0877 REMARK 3 T13: 0.1942 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.6356 L22: 2.3229 REMARK 3 L33: 3.9064 L12: 0.0931 REMARK 3 L13: -4.0114 L23: -1.0858 REMARK 3 S TENSOR REMARK 3 S11: -0.2893 S12: -0.1873 S13: -0.5437 REMARK 3 S21: -0.1955 S22: 0.2032 S23: -0.3254 REMARK 3 S31: 0.3836 S32: -0.0719 S33: -0.0555 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN I AND RESID 201:211 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7889 -8.5879 79.2331 REMARK 3 T TENSOR REMARK 3 T11: 0.5168 T22: 0.4740 REMARK 3 T33: 0.3881 T12: 0.0928 REMARK 3 T13: -0.0274 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.1610 L22: 2.9535 REMARK 3 L33: 2.1231 L12: 0.5893 REMARK 3 L13: -1.0973 L23: 0.4057 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: 0.0682 S13: -0.1239 REMARK 3 S21: -0.7288 S22: -0.0306 S23: -0.2482 REMARK 3 S31: -0.1295 S32: -0.1151 S33: 0.0820 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN I AND RESID 212:219 REMARK 3 ORIGIN FOR THE GROUP (A): -28.4774 -14.5200 84.0929 REMARK 3 T TENSOR REMARK 3 T11: 0.5204 T22: 0.4509 REMARK 3 T33: 0.3036 T12: 0.0489 REMARK 3 T13: -0.0101 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 9.4565 L22: 1.8830 REMARK 3 L33: 3.4508 L12: 3.0759 REMARK 3 L13: 0.3990 L23: -0.0262 REMARK 3 S TENSOR REMARK 3 S11: -0.1438 S12: 0.0110 S13: -0.3795 REMARK 3 S21: -0.5300 S22: -0.0034 S23: -0.2066 REMARK 3 S31: 0.3447 S32: -0.2375 S33: 0.1412 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN I AND RESID 220:224 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2235 -1.8981 82.6075 REMARK 3 T TENSOR REMARK 3 T11: 0.4673 T22: 0.5910 REMARK 3 T33: 0.6530 T12: 0.0126 REMARK 3 T13: -0.0468 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 7.5511 L22: 1.0376 REMARK 3 L33: 7.0849 L12: 2.6774 REMARK 3 L13: -3.3975 L23: -1.9041 REMARK 3 S TENSOR REMARK 3 S11: -0.2700 S12: -0.0804 S13: 0.3085 REMARK 3 S21: 0.0688 S22: -0.1898 S23: -1.1741 REMARK 3 S31: 0.2823 S32: 0.9140 S33: 0.0670 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN X AND RESID 132:137 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2799 -13.9873 55.2652 REMARK 3 T TENSOR REMARK 3 T11: 0.3413 T22: 0.3669 REMARK 3 T33: 0.4283 T12: 0.0345 REMARK 3 T13: 0.0599 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 9.1926 L22: 2.3431 REMARK 3 L33: 9.3180 L12: -2.2363 REMARK 3 L13: 2.4202 L23: -0.8597 REMARK 3 S TENSOR REMARK 3 S11: -0.5116 S12: -0.9914 S13: -0.0700 REMARK 3 S21: 0.8914 S22: -0.2352 S23: -0.5510 REMARK 3 S31: 0.3928 S32: 0.4721 S33: 0.1678 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN X AND RESID 138:141 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0710 -5.0763 58.8695 REMARK 3 T TENSOR REMARK 3 T11: 0.6211 T22: 0.6983 REMARK 3 T33: 0.7850 T12: -0.1813 REMARK 3 T13: 0.0659 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 6.2721 L22: 3.8554 REMARK 3 L33: 5.6358 L12: 4.6666 REMARK 3 L13: 1.8681 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.2363 S12: -0.5349 S13: -0.6033 REMARK 3 S21: 0.6009 S22: 0.2476 S23: -0.0902 REMARK 3 S31: 0.6282 S32: -0.1783 S33: 0.0973 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN X AND RESID 142:147 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4593 2.7342 56.6481 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.2616 REMARK 3 T33: 0.3066 T12: 0.0123 REMARK 3 T13: 0.0112 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 4.6269 L22: 3.2447 REMARK 3 L33: 7.8468 L12: 2.4518 REMARK 3 L13: -5.9632 L23: -2.5941 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: -0.2280 S13: -0.3675 REMARK 3 S21: 0.4983 S22: -0.2038 S23: -0.5497 REMARK 3 S31: -0.0072 S32: 0.4979 S33: 0.0774 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN X AND RESID 148:181 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0300 -2.9243 44.7742 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.2135 REMARK 3 T33: 0.3048 T12: 0.0256 REMARK 3 T13: 0.0319 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.3509 L22: 1.5426 REMARK 3 L33: 1.4059 L12: -0.0957 REMARK 3 L13: -0.3327 L23: 0.4034 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: 0.1544 S13: -0.0235 REMARK 3 S21: -0.3107 S22: -0.1141 S23: -0.1262 REMARK 3 S31: -0.0386 S32: -0.0937 S33: 0.0379 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN X AND RESID 182:185 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9772 -2.8328 35.7944 REMARK 3 T TENSOR REMARK 3 T11: 0.5105 T22: 0.3903 REMARK 3 T33: 0.4274 T12: 0.0419 REMARK 3 T13: 0.1132 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 9.3468 L22: 6.1176 REMARK 3 L33: 3.7550 L12: -0.8330 REMARK 3 L13: -4.9531 L23: 3.0353 REMARK 3 S TENSOR REMARK 3 S11: 0.2520 S12: 1.0722 S13: 0.0798 REMARK 3 S21: -1.1844 S22: 0.1078 S23: -0.1556 REMARK 3 S31: -0.3233 S32: -0.3329 S33: -0.0248 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN X AND RESID 186:189 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3166 -12.2843 45.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.3498 T22: 0.2645 REMARK 3 T33: 0.5168 T12: 0.0597 REMARK 3 T13: 0.1287 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.5979 L22: 7.0113 REMARK 3 L33: 3.5868 L12: 4.0986 REMARK 3 L13: -1.6231 L23: 0.7372 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.1843 S13: -0.4221 REMARK 3 S21: -0.0347 S22: -0.3705 S23: -1.0981 REMARK 3 S31: 0.8730 S32: 0.6345 S33: 0.0536 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN X AND RESID 190:197 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0363 -2.3641 43.2992 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2777 REMARK 3 T33: 0.4575 T12: 0.0388 REMARK 3 T13: 0.0852 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 1.3859 L22: 5.1906 REMARK 3 L33: 2.5418 L12: 2.0384 REMARK 3 L13: -1.3135 L23: -0.4317 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: 0.4706 S13: -0.0196 REMARK 3 S21: -0.5751 S22: -0.1183 S23: -0.7454 REMARK 3 S31: 0.2320 S32: 0.1342 S33: 0.1183 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN X AND RESID 198:204 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9277 7.5145 43.6786 REMARK 3 T TENSOR REMARK 3 T11: 0.3584 T22: 0.2796 REMARK 3 T33: 0.3785 T12: 0.0362 REMARK 3 T13: 0.0537 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 5.6703 L22: 6.3733 REMARK 3 L33: 3.2538 L12: 1.9796 REMARK 3 L13: -1.3047 L23: -2.5635 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0774 S13: -0.0789 REMARK 3 S21: -0.4162 S22: -0.5053 S23: -0.5555 REMARK 3 S31: 0.2429 S32: 0.3725 S33: -0.0120 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN X AND RESID 205:222 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2193 -7.6738 51.0733 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.2502 REMARK 3 T33: 0.3312 T12: 0.0081 REMARK 3 T13: 0.0485 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.5628 L22: 4.2271 REMARK 3 L33: 1.6163 L12: 1.7393 REMARK 3 L13: -0.1958 L23: 0.3660 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -0.0593 S13: -0.0867 REMARK 3 S21: 0.0019 S22: -0.1563 S23: 0.1557 REMARK 3 S31: 0.1566 S32: -0.0789 S33: 0.0888 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN X AND RESID 223:226 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0811 11.5552 52.1672 REMARK 3 T TENSOR REMARK 3 T11: 0.4839 T22: 0.4444 REMARK 3 T33: 0.5563 T12: -0.1621 REMARK 3 T13: 0.0538 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 2.9912 L22: 3.0122 REMARK 3 L33: 5.9815 L12: -1.9179 REMARK 3 L13: 0.6776 L23: -1.2611 REMARK 3 S TENSOR REMARK 3 S11: 0.2545 S12: -0.7302 S13: 0.7361 REMARK 3 S21: 0.3285 S22: -0.2681 S23: -1.4117 REMARK 3 S31: -1.3814 S32: 0.9530 S33: 0.1598 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ABD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25367 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 43.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CKV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION METHOD, MOTHER LIQUOR: REMARK 280 1.5MICROM VERGFR1-D2, 15MM TRIS/HCL PH 8.1, 25MM NACL, 5MM CUSO4 REMARK 280 RESERVOIR: 19.5% (W/V) PEG8000, 100MM SA,, PH 7.5, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.27350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.09450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.23850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.27350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.09450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.23850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.27350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.09450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.23850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.27350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.09450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.23850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CU CU I1225 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN I 225 REMARK 465 THR I 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG E 159 O HOH E 2035 1.54 REMARK 500 HE ARG X 224 O HOH X 2020 1.58 REMARK 500 OG1 THR X 198 O HOH X 2094 2.13 REMARK 500 O ARG I 133 O HOH I 2001 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H ARG E 133 CU CU X 1228 2455 1.28 REMARK 500 O HOH X 2090 O HOH X 2090 2555 2.13 REMARK 500 O HOH E 2003 O HOH X 2118 2455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 140 -104.70 -99.06 REMARK 500 PRO E 157 44.79 -85.54 REMARK 500 LEU E 174 58.19 -146.52 REMARK 500 LYS E 182 -90.23 -120.20 REMARK 500 GLN E 225 -71.49 -36.73 REMARK 500 SER I 140 -99.98 -101.11 REMARK 500 PRO I 157 44.22 -81.89 REMARK 500 LYS I 182 -96.50 -81.24 REMARK 500 GLU X 141 -102.92 -108.89 REMARK 500 PRO X 157 40.89 -83.33 REMARK 500 LYS X 182 -63.95 -122.37 REMARK 500 LYS X 190 -37.72 -132.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU X1228 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG E 133 O REMARK 620 2 HIS X 214 NE2 96.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E1227 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 137 O REMARK 620 2 PRO E 157 O 142.0 REMARK 620 3 TYR E 220 OH 92.4 94.2 REMARK 620 4 HOH E2004 O 68.6 73.7 107.6 REMARK 620 5 HOH E2021 O 118.6 88.5 122.6 127.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU X1227 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 147 NE2 REMARK 620 2 HIS E 223 NE2 92.2 REMARK 620 3 HIS X 147 NE2 129.3 106.7 REMARK 620 4 HIS X 223 NE2 113.6 126.7 92.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU X1229 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 214 NE2 REMARK 620 2 ARG X 133 O 100.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU I1226 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG I 133 O REMARK 620 2 HIS I 214 NE2 91.8 REMARK 620 3 HOH I2001 O 61.9 87.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU I1225 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS I 147 NE2 REMARK 620 2 HIS I 147 NE2 142.2 REMARK 620 3 HIS I 223 NE2 102.2 91.9 REMARK 620 4 HIS I 223 NE2 92.2 101.5 136.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X1230 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 137 O REMARK 620 2 TYR X 220 OH 96.1 REMARK 620 3 HOH X2010 O 126.0 131.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU X 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU I 1225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU I 1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU X 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU X 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 X 1231 DBREF 5ABD E 132 226 UNP P17948 VGFR1_HUMAN 132 226 DBREF 5ABD I 132 226 UNP P17948 VGFR1_HUMAN 132 226 DBREF 5ABD X 132 226 UNP P17948 VGFR1_HUMAN 132 226 SEQRES 1 E 95 GLY ARG PRO PHE VAL GLU MET TYR SER GLU ILE PRO GLU SEQRES 2 E 95 ILE ILE HIS MET THR GLU GLY ARG GLU LEU VAL ILE PRO SEQRES 3 E 95 CYS ARG VAL THR SER PRO ASN ILE THR VAL THR LEU LYS SEQRES 4 E 95 LYS PHE PRO LEU ASP THR LEU ILE PRO ASP GLY LYS ARG SEQRES 5 E 95 ILE ILE TRP ASP SER ARG LYS GLY PHE ILE ILE SER ASN SEQRES 6 E 95 ALA THR TYR LYS GLU ILE GLY LEU LEU THR CYS GLU ALA SEQRES 7 E 95 THR VAL ASN GLY HIS LEU TYR LYS THR ASN TYR LEU THR SEQRES 8 E 95 HIS ARG GLN THR SEQRES 1 I 95 GLY ARG PRO PHE VAL GLU MET TYR SER GLU ILE PRO GLU SEQRES 2 I 95 ILE ILE HIS MET THR GLU GLY ARG GLU LEU VAL ILE PRO SEQRES 3 I 95 CYS ARG VAL THR SER PRO ASN ILE THR VAL THR LEU LYS SEQRES 4 I 95 LYS PHE PRO LEU ASP THR LEU ILE PRO ASP GLY LYS ARG SEQRES 5 I 95 ILE ILE TRP ASP SER ARG LYS GLY PHE ILE ILE SER ASN SEQRES 6 I 95 ALA THR TYR LYS GLU ILE GLY LEU LEU THR CYS GLU ALA SEQRES 7 I 95 THR VAL ASN GLY HIS LEU TYR LYS THR ASN TYR LEU THR SEQRES 8 I 95 HIS ARG GLN THR SEQRES 1 X 95 GLY ARG PRO PHE VAL GLU MET TYR SER GLU ILE PRO GLU SEQRES 2 X 95 ILE ILE HIS MET THR GLU GLY ARG GLU LEU VAL ILE PRO SEQRES 3 X 95 CYS ARG VAL THR SER PRO ASN ILE THR VAL THR LEU LYS SEQRES 4 X 95 LYS PHE PRO LEU ASP THR LEU ILE PRO ASP GLY LYS ARG SEQRES 5 X 95 ILE ILE TRP ASP SER ARG LYS GLY PHE ILE ILE SER ASN SEQRES 6 X 95 ALA THR TYR LYS GLU ILE GLY LEU LEU THR CYS GLU ALA SEQRES 7 X 95 THR VAL ASN GLY HIS LEU TYR LYS THR ASN TYR LEU THR SEQRES 8 X 95 HIS ARG GLN THR HET NA E1227 1 HET SO4 E1228 5 HET CU I1225 1 HET CU I1226 1 HET CU X1227 1 HET CU X1228 1 HET CU X1229 1 HET NA X1230 1 HET SO4 X1231 5 HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM CU COPPER (II) ION FORMUL 4 NA 2(NA 1+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 CU 5(CU 2+) FORMUL 13 HOH *224(H2 O) HELIX 1 1 THR E 198 ILE E 202 5 5 HELIX 2 2 THR I 198 ILE I 202 5 5 HELIX 3 3 THR X 198 ILE X 202 5 5 SHEET 1 EA 5 GLU E 144 MET E 148 0 SHEET 2 EA 5 HIS E 214 ARG E 224 1 O ASN E 219 N GLU E 144 SHEET 3 EA 5 GLY E 203 VAL E 211 -1 O GLY E 203 N THR E 222 SHEET 4 EA 5 VAL E 167 LYS E 171 -1 O THR E 168 N GLU E 208 SHEET 5 EA 5 ASP E 175 LEU E 177 -1 O ASP E 175 N LYS E 171 SHEET 1 EB 3 LEU E 154 ILE E 156 0 SHEET 2 EB 3 GLY E 191 ILE E 194 -1 O PHE E 192 N ILE E 156 SHEET 3 EB 3 ILE E 184 ASP E 187 -1 O ILE E 185 N ILE E 193 SHEET 1 IA 5 GLU I 144 HIS I 147 0 SHEET 2 IA 5 HIS I 214 HIS I 223 1 O ASN I 219 N GLU I 144 SHEET 3 IA 5 GLY I 203 VAL I 211 -1 O GLY I 203 N THR I 222 SHEET 4 IA 5 VAL I 167 LYS I 171 -1 O THR I 168 N GLU I 208 SHEET 5 IA 5 ASP I 175 THR I 176 -1 O ASP I 175 N LYS I 171 SHEET 1 IB 3 LEU I 154 ILE I 156 0 SHEET 2 IB 3 GLY I 191 ILE I 194 -1 O PHE I 192 N ILE I 156 SHEET 3 IB 3 ILE I 184 ASP I 187 -1 O ILE I 185 N ILE I 193 SHEET 1 XA 5 GLU X 144 MET X 148 0 SHEET 2 XA 5 HIS X 214 ARG X 224 1 O ASN X 219 N GLU X 144 SHEET 3 XA 5 GLY X 203 VAL X 211 -1 O GLY X 203 N THR X 222 SHEET 4 XA 5 VAL X 167 LYS X 171 -1 O THR X 168 N GLU X 208 SHEET 5 XA 5 ASP X 175 LEU X 177 -1 O ASP X 175 N LYS X 171 SHEET 1 XB 3 LEU X 154 ILE X 156 0 SHEET 2 XB 3 GLY X 191 ILE X 194 -1 O PHE X 192 N ILE X 156 SHEET 3 XB 3 ILE X 184 ASP X 187 -1 O ILE X 185 N ILE X 193 SSBOND 1 CYS E 158 CYS E 207 1555 1555 2.07 SSBOND 2 CYS I 158 CYS I 207 1555 1555 2.06 SSBOND 3 CYS X 158 CYS X 207 1555 1555 2.10 LINK O ARG E 133 CU CU X1228 2455 1555 2.17 LINK O GLU E 137 NA NA E1227 1555 1555 2.80 LINK NE2 HIS E 147 CU CU X1227 1555 1555 2.22 LINK O PRO E 157 NA NA E1227 1555 1555 3.00 LINK NE2 HIS E 214 CU CU X1229 2455 1555 1.86 LINK OH TYR E 220 NA NA E1227 1555 1555 2.47 LINK NE2 HIS E 223 CU CU X1227 1555 1555 2.06 LINK NA NA E1227 O HOH E2004 1555 1555 2.98 LINK NA NA E1227 O HOH E2021 1555 1555 2.81 LINK O ARG I 133 CU CU I1226 3456 1555 2.25 LINK NE2 HIS I 147 CU CU I1225 1555 1555 2.31 LINK NE2 HIS I 147 CU CU I1225 4556 1555 2.32 LINK NE2 HIS I 214 CU CU I1226 1555 1555 1.86 LINK NE2 HIS I 223 CU CU I1225 1555 1555 2.22 LINK NE2 HIS I 223 CU CU I1225 4556 1555 2.23 LINK CU CU I1226 O HOH I2001 1555 3456 1.97 LINK O ARG X 133 CU CU X1229 1555 1555 2.14 LINK O GLU X 137 NA NA X1230 1555 1555 3.11 LINK NE2 HIS X 147 CU CU X1227 1555 1555 2.17 LINK NE2 HIS X 214 CU CU X1228 1555 1555 1.89 LINK OH TYR X 220 NA NA X1230 1555 1555 2.44 LINK NE2 HIS X 223 CU CU X1227 1555 1555 2.11 LINK NA NA X1230 O HOH X2010 1555 1555 2.73 CISPEP 1 ARG E 133 PRO E 134 0 0.34 CISPEP 2 PHE E 172 PRO E 173 0 3.83 CISPEP 3 ARG I 133 PRO I 134 0 0.62 CISPEP 4 PHE I 172 PRO I 173 0 3.14 CISPEP 5 ARG X 133 PRO X 134 0 -1.00 CISPEP 6 PHE X 172 PRO X 173 0 6.13 SITE 1 AC1 4 HIS E 147 HIS E 223 HIS X 147 HIS X 223 SITE 1 AC2 2 HIS I 147 HIS I 223 SITE 1 AC3 4 GLY I 132 ARG I 133 HIS I 214 HOH I2001 SITE 1 AC4 4 GLY E 132 ARG E 133 HIS X 214 HOH X2118 SITE 1 AC5 4 HIS E 214 GLY X 132 ARG X 133 HOH X2001 SITE 1 AC6 6 GLU E 137 PRO E 157 ARG E 159 TYR E 220 SITE 2 AC6 6 HOH E2004 HOH E2021 SITE 1 AC7 5 GLU X 137 TYR X 139 PRO X 157 TYR X 220 SITE 2 AC7 5 HOH X2010 SITE 1 AC8 3 HIS E 223 ARG E 224 HOH E2082 SITE 1 AC9 4 HIS X 223 ARG X 224 HOH X2048 HOH X2119 CRYST1 62.547 66.189 176.477 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005666 0.00000 MTRIX1 1 0.941450 -0.337130 0.004170 -2.50149 1 MTRIX2 1 0.336450 0.938630 -0.076010 18.22159 1 MTRIX3 1 0.021710 0.072960 0.997100 -30.02704 1 MTRIX1 2 0.722000 0.691890 0.002330 -9.33501 1 MTRIX2 2 0.688220 -0.718500 0.100590 16.45007 1 MTRIX3 2 0.071270 -0.071030 -0.994930 116.55289 1