HEADER ELECTRON TRANSPORT 07-AUG-15 5ABR TITLE STRUCTURE OF FESI PROTEIN FROM AZOTOBACTER VINELANDII COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN, 2FE-2S; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FESI PROTEIN, 2FEAVFDI, IRON-SULFUR PROTEIN I, SHETHNA COMPND 5 PROTE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII; SOURCE 3 ORGANISM_TAXID: 354; SOURCE 4 STRAIN: DSM-2289; SOURCE 5 ATCC: 478; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1452720; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS ELECTRON TRANSPORT, FERREDOXIN EXPDTA X-RAY DIFFRACTION AUTHOR B.KABASAKAL,J.W.MURRAY REVDAT 2 08-MAY-24 5ABR 1 REMARK REVDAT 1 24-AUG-16 5ABR 0 JRNL AUTH B.KABASAKAL,C.A.R.COTTON,J.W.MURRAY JRNL TITL STRUCTURE OF FESI PROTEIN FROM AZOTOBACTER VINELANDII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 11386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1558 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58500 REMARK 3 B22 (A**2) : -0.64700 REMARK 3 B33 (A**2) : -0.77600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.247 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.183 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1616 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1516 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2194 ; 2.373 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3472 ; 1.193 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 7.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;41.186 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;14.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;25.942 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 240 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1860 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 366 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 870 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2894 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1518 ; 0.180 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 500 6 REMARK 3 1 A 1 A 500 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1541 ; 0.24 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1541 ; 1.80 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1450 17.2210 -7.7660 REMARK 3 T TENSOR REMARK 3 T11: 0.2781 T22: 0.0410 REMARK 3 T33: 0.0659 T12: -0.0147 REMARK 3 T13: -0.1312 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 26.2947 L22: 8.3744 REMARK 3 L33: 4.1134 L12: 12.3485 REMARK 3 L13: -3.3179 L23: -1.8123 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.5215 S13: -0.1018 REMARK 3 S21: -0.0385 S22: -0.1348 S23: 0.0251 REMARK 3 S31: -0.1455 S32: 0.3637 S33: 0.1620 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8310 13.8040 -0.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.3635 T22: 0.0127 REMARK 3 T33: 0.1209 T12: 0.0142 REMARK 3 T13: -0.1825 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 8.2792 L22: 8.1493 REMARK 3 L33: 1.3328 L12: 7.7203 REMARK 3 L13: 2.0354 L23: 2.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.1929 S12: -0.2024 S13: 0.3381 REMARK 3 S21: 0.4956 S22: -0.1876 S23: 0.1791 REMARK 3 S31: 0.1163 S32: -0.1203 S33: -0.0054 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8490 11.5800 -8.2550 REMARK 3 T TENSOR REMARK 3 T11: 0.3917 T22: 0.0174 REMARK 3 T33: 0.1239 T12: -0.0258 REMARK 3 T13: -0.2177 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 3.3888 L22: 0.1789 REMARK 3 L33: 3.3132 L12: -0.4894 REMARK 3 L13: 2.2974 L23: 0.1042 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: 0.2111 S13: 0.0790 REMARK 3 S21: 0.0368 S22: -0.0162 S23: -0.0293 REMARK 3 S31: 0.1829 S32: 0.1946 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8410 12.5910 -0.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.0044 REMARK 3 T33: 0.1160 T12: -0.0168 REMARK 3 T13: -0.1581 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 18.6983 L22: 4.1432 REMARK 3 L33: 7.0317 L12: 3.2930 REMARK 3 L13: -5.4769 L23: -1.7653 REMARK 3 S TENSOR REMARK 3 S11: -0.2137 S12: 0.2481 S13: -0.3088 REMARK 3 S21: -0.0396 S22: 0.0171 S23: -0.2326 REMARK 3 S31: -0.3621 S32: -0.0791 S33: 0.1966 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8490 3.4730 -8.8220 REMARK 3 T TENSOR REMARK 3 T11: 0.4448 T22: 0.1029 REMARK 3 T33: 0.3278 T12: -0.0703 REMARK 3 T13: -0.0761 T23: -0.1036 REMARK 3 L TENSOR REMARK 3 L11: 16.8374 L22: 2.7449 REMARK 3 L33: 9.5298 L12: 0.0040 REMARK 3 L13: 6.2416 L23: 1.3177 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: 0.7346 S13: -1.3514 REMARK 3 S21: -0.4826 S22: 0.2673 S23: -0.2923 REMARK 3 S31: 0.5530 S32: 0.3564 S33: -0.2031 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0280 22.5930 -13.0070 REMARK 3 T TENSOR REMARK 3 T11: 0.3270 T22: 0.0097 REMARK 3 T33: 0.1001 T12: -0.0175 REMARK 3 T13: -0.1521 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 6.1961 L22: 6.6725 REMARK 3 L33: 3.7508 L12: -4.9394 REMARK 3 L13: -2.7968 L23: 4.2451 REMARK 3 S TENSOR REMARK 3 S11: -0.1000 S12: 0.1198 S13: -0.2868 REMARK 3 S21: 0.1921 S22: -0.0229 S23: 0.3217 REMARK 3 S31: 0.2792 S32: -0.0721 S33: 0.1229 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 47 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3960 19.0710 -22.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.3829 T22: 0.0095 REMARK 3 T33: 0.1242 T12: -0.0286 REMARK 3 T13: -0.1909 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.0022 L22: 10.7042 REMARK 3 L33: 9.8530 L12: -1.9137 REMARK 3 L13: -0.8998 L23: 9.5467 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.0018 S13: -0.1431 REMARK 3 S21: -0.1635 S22: -0.1605 S23: 0.4488 REMARK 3 S31: -0.0506 S32: -0.2274 S33: 0.2077 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4540 23.6480 -17.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.4283 T22: 0.0406 REMARK 3 T33: 0.0970 T12: -0.0018 REMARK 3 T13: -0.1923 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.9010 L22: 0.0301 REMARK 3 L33: 3.4762 L12: -0.1814 REMARK 3 L13: 1.0654 L23: -0.2392 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: 0.1055 S13: 0.0697 REMARK 3 S21: -0.0084 S22: 0.0072 S23: -0.0086 REMARK 3 S31: -0.0124 S32: 0.1404 S33: 0.0708 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1170 22.6080 -29.4660 REMARK 3 T TENSOR REMARK 3 T11: 0.3419 T22: 0.0192 REMARK 3 T33: 0.0721 T12: -0.0006 REMARK 3 T13: -0.1405 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 17.6895 L22: 10.4058 REMARK 3 L33: 13.6409 L12: -7.1674 REMARK 3 L13: -10.1431 L23: 7.3075 REMARK 3 S TENSOR REMARK 3 S11: 0.2043 S12: 0.2936 S13: 0.1191 REMARK 3 S21: -0.4910 S22: 0.1465 S23: -0.1178 REMARK 3 S31: -0.0779 S32: 0.1222 S33: -0.3508 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 95 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9250 31.7620 -22.8590 REMARK 3 T TENSOR REMARK 3 T11: 0.8693 T22: 0.2939 REMARK 3 T33: 0.4068 T12: -0.2827 REMARK 3 T13: 0.0851 T23: -0.1783 REMARK 3 L TENSOR REMARK 3 L11: 8.9772 L22: 3.3876 REMARK 3 L33: 13.6486 L12: 0.2937 REMARK 3 L13: 3.3443 L23: -4.2600 REMARK 3 S TENSOR REMARK 3 S11: -0.0776 S12: -0.2138 S13: 0.3269 REMARK 3 S21: -0.2511 S22: 0.1121 S23: -0.6356 REMARK 3 S31: -1.2613 S32: 0.7915 S33: -0.0344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5ABR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.73404 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11386 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 42.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 77% V/V MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.05000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN B 44 O HOH B 2014 2444 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LYS B 27 CD - CE - NZ ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 90 -63.18 -92.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2027 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 500 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 FES A 500 S1 116.0 REMARK 620 3 FES A 500 S2 105.8 100.9 REMARK 620 4 CYS A 24 SG 109.3 109.4 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 500 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 56 SG REMARK 620 2 FES A 500 S1 116.2 REMARK 620 3 FES A 500 S2 118.0 102.0 REMARK 620 4 CYS A 60 SG 90.1 123.1 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 500 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 11 SG REMARK 620 2 FES B 500 S1 115.4 REMARK 620 3 FES B 500 S2 103.1 105.1 REMARK 620 4 CYS B 24 SG 103.8 110.9 118.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 500 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 56 SG REMARK 620 2 FES B 500 S1 112.9 REMARK 620 3 FES B 500 S2 114.1 102.5 REMARK 620 4 CYS B 60 SG 90.2 128.3 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 500 DBREF 5ABR A 1 107 UNP P82802 FER2_AZOVD 1 107 DBREF 5ABR B 1 107 UNP P82802 FER2_AZOVD 1 107 SEQADV 5ABR MET A -18 UNP P82802 EXPRESSION TAG SEQADV 5ABR GLY A -17 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER A -16 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER A -15 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS A -14 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS A -13 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS A -12 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS A -11 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS A -10 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS A -9 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER A -8 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER A -7 UNP P82802 EXPRESSION TAG SEQADV 5ABR GLY A -6 UNP P82802 EXPRESSION TAG SEQADV 5ABR LEU A -5 UNP P82802 EXPRESSION TAG SEQADV 5ABR VAL A -4 UNP P82802 EXPRESSION TAG SEQADV 5ABR PRO A -3 UNP P82802 EXPRESSION TAG SEQADV 5ABR ARG A -2 UNP P82802 EXPRESSION TAG SEQADV 5ABR GLY A -1 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER A 0 UNP P82802 EXPRESSION TAG SEQADV 5ABR MET B -18 UNP P82802 EXPRESSION TAG SEQADV 5ABR GLY B -17 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER B -16 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER B -15 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS B -14 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS B -13 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS B -12 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS B -11 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS B -10 UNP P82802 EXPRESSION TAG SEQADV 5ABR HIS B -9 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER B -8 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER B -7 UNP P82802 EXPRESSION TAG SEQADV 5ABR GLY B -6 UNP P82802 EXPRESSION TAG SEQADV 5ABR LEU B -5 UNP P82802 EXPRESSION TAG SEQADV 5ABR VAL B -4 UNP P82802 EXPRESSION TAG SEQADV 5ABR PRO B -3 UNP P82802 EXPRESSION TAG SEQADV 5ABR ARG B -2 UNP P82802 EXPRESSION TAG SEQADV 5ABR GLY B -1 UNP P82802 EXPRESSION TAG SEQADV 5ABR SER B 0 UNP P82802 EXPRESSION TAG SEQRES 1 A 126 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 126 LEU VAL PRO ARG GLY SER MET ALA LYS PRO GLU PHE HIS SEQRES 3 A 126 ILE PHE ILE CYS ALA GLN ASN ARG PRO ALA GLY HIS PRO SEQRES 4 A 126 ARG GLY SER CYS GLY ALA LYS GLY ALA GLU GLY VAL TYR SEQRES 5 A 126 ASN ALA PHE ALA GLN VAL LEU ILE GLN LYS ASN LEU THR SEQRES 6 A 126 ASN ARG ILE ALA LEU THR THR THR GLY CYS LEU GLY PRO SEQRES 7 A 126 CYS GLN ALA GLY ALA ASN VAL LEU ILE TYR PRO GLY ALA SEQRES 8 A 126 VAL MET TYR SER TRP VAL GLU PRO ALA ASP ALA ALA ILE SEQRES 9 A 126 ILE VAL GLU GLN HIS LEU LEU GLY GLY GLU PRO TYR ALA SEQRES 10 A 126 ASP LYS LEU THR PRO ALA GLU ILE TRP SEQRES 1 B 126 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 126 LEU VAL PRO ARG GLY SER MET ALA LYS PRO GLU PHE HIS SEQRES 3 B 126 ILE PHE ILE CYS ALA GLN ASN ARG PRO ALA GLY HIS PRO SEQRES 4 B 126 ARG GLY SER CYS GLY ALA LYS GLY ALA GLU GLY VAL TYR SEQRES 5 B 126 ASN ALA PHE ALA GLN VAL LEU ILE GLN LYS ASN LEU THR SEQRES 6 B 126 ASN ARG ILE ALA LEU THR THR THR GLY CYS LEU GLY PRO SEQRES 7 B 126 CYS GLN ALA GLY ALA ASN VAL LEU ILE TYR PRO GLY ALA SEQRES 8 B 126 VAL MET TYR SER TRP VAL GLU PRO ALA ASP ALA ALA ILE SEQRES 9 B 126 ILE VAL GLU GLN HIS LEU LEU GLY GLY GLU PRO TYR ALA SEQRES 10 B 126 ASP LYS LEU THR PRO ALA GLU ILE TRP HET FES A 500 4 HET FES B 500 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 3 FES 2(FE2 S2) FORMUL 5 HOH *128(H2 O) HELIX 1 1 GLY A 28 LYS A 43 1 16 HELIX 2 2 PRO A 59 GLY A 63 5 5 HELIX 3 3 ALA A 81 HIS A 90 1 10 HELIX 4 4 TYR A 97 LYS A 100 5 4 HELIX 5 5 GLY B 28 LYS B 43 1 16 HELIX 6 6 PRO B 59 GLY B 63 5 5 HELIX 7 7 ALA B 81 HIS B 90 1 10 HELIX 8 8 TYR B 97 LYS B 100 5 4 SHEET 1 AA 4 ILE A 49 THR A 54 0 SHEET 2 AA 4 PHE A 6 CYS A 11 1 O PHE A 6 N ALA A 50 SHEET 3 AA 4 VAL A 66 TYR A 69 -1 O LEU A 67 N PHE A 9 SHEET 4 AA 4 VAL A 73 TYR A 75 -1 O VAL A 73 N ILE A 68 SHEET 1 BA 4 ILE B 49 THR B 54 0 SHEET 2 BA 4 PHE B 6 CYS B 11 1 O PHE B 6 N ALA B 50 SHEET 3 BA 4 VAL B 66 TYR B 69 -1 O LEU B 67 N PHE B 9 SHEET 4 BA 4 VAL B 73 TYR B 75 -1 O VAL B 73 N ILE B 68 LINK SG CYS A 11 FE1 FES A 500 1555 1555 2.34 LINK SG CYS A 24 FE1 FES A 500 1555 1555 2.37 LINK SG CYS A 56 FE2 FES A 500 1555 1555 2.34 LINK SG CYS A 60 FE2 FES A 500 1555 1555 2.34 LINK SG CYS B 11 FE1 FES B 500 1555 1555 2.38 LINK SG CYS B 24 FE1 FES B 500 1555 1555 2.34 LINK SG CYS B 56 FE2 FES B 500 1555 1555 2.38 LINK SG CYS B 60 FE2 FES B 500 1555 1555 2.32 CISPEP 1 GLY A 63 ALA A 64 0 -11.02 CISPEP 2 TYR A 69 PRO A 70 0 -6.66 CISPEP 3 GLY B 63 ALA B 64 0 3.69 CISPEP 4 TYR B 69 PRO B 70 0 -2.27 SITE 1 AC1 9 CYS A 11 GLN A 13 ARG A 15 CYS A 24 SITE 2 AC1 9 CYS A 56 LEU A 57 GLY A 58 CYS A 60 SITE 3 AC1 9 ASN A 65 SITE 1 AC2 9 CYS B 11 GLN B 13 ARG B 15 CYS B 24 SITE 2 AC2 9 CYS B 56 LEU B 57 GLY B 58 CYS B 60 SITE 3 AC2 9 ASN B 65 CRYST1 39.040 60.100 45.510 90.00 109.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025615 0.000000 0.009005 0.00000 SCALE2 0.000000 0.016639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023292 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.520100 0.005422 -0.854100 -12.03000 1 MTRIX2 2 0.000693 -1.000000 -0.005926 35.21000 1 MTRIX3 2 -0.854100 0.002489 -0.520100 -21.51000 1 MTRIX1 3 0.518989 0.004513 -0.854769 -12.00103 1 MTRIX2 3 -0.000290 -0.999985 -0.005456 35.21083 1 MTRIX3 3 -0.854781 0.003080 -0.518980 -21.50599 1