HEADER HYDROLASE 17-AUG-15 5ACP TITLE W228R-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN THE TITLE 2 METALLO-BETA-LACTAMASE GIM-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GIM-1 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-LACTAMASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR PRARE KEYWDS HYDROLASE, METALLO-BETA-LACTAMASE, GIM-1, CARBAPENEMASE, ENZYME KEYWDS 2 KINETICS, MIC EXPDTA X-RAY DIFFRACTION AUTHOR S.SKAGSETH,T.J.CARLSEN,G.E.K.BJERGA,J.SPENCER,O.SAMUELSEN,H.- AUTHOR 2 K.S.LEIROS REVDAT 4 10-JAN-24 5ACP 1 REMARK LINK REVDAT 3 23-OCT-19 5ACP 1 LINK ATOM REVDAT 2 10-FEB-16 5ACP 1 JRNL REVDAT 1 23-DEC-15 5ACP 0 JRNL AUTH S.SKAGSETH,T.J.CARLSEN,G.E.K.BJERGA,J.SPENCER,O.SAMUELSEN, JRNL AUTH 2 H.S.LEIROS JRNL TITL ROLE OF RESIDUES W228 AND Y233 IN THE STRUCTURE AND ACTIVITY JRNL TITL 2 OF METALLO-BETA-LACTAMASE GIM-1. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 60 990 2015 JRNL REFN ISSN 0066-4804 JRNL PMID 26643332 JRNL DOI 10.1128/AAC.02017-15 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 28382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8362 - 4.2594 0.99 2722 145 0.1623 0.1994 REMARK 3 2 4.2594 - 3.3835 0.99 2677 153 0.1879 0.2351 REMARK 3 3 3.3835 - 2.9566 0.99 2689 148 0.2151 0.2397 REMARK 3 4 2.9566 - 2.6866 0.99 2716 126 0.2387 0.2464 REMARK 3 5 2.6866 - 2.4942 0.99 2731 131 0.2258 0.2717 REMARK 3 6 2.4942 - 2.3473 1.00 2665 149 0.2364 0.2544 REMARK 3 7 2.3473 - 2.2298 0.99 2704 147 0.2387 0.2406 REMARK 3 8 2.2298 - 2.1328 0.99 2670 140 0.2426 0.2659 REMARK 3 9 2.1328 - 2.0508 0.99 2664 138 0.2672 0.3009 REMARK 3 10 2.0508 - 1.9800 0.99 2716 151 0.2828 0.2933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3579 REMARK 3 ANGLE : 0.854 4882 REMARK 3 CHIRALITY : 0.032 546 REMARK 3 PLANARITY : 0.004 626 REMARK 3 DIHEDRAL : 14.099 1306 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -13.0929 -48.9509 -11.1348 REMARK 3 T TENSOR REMARK 3 T11: 0.3244 T22: 0.4024 REMARK 3 T33: 0.3491 T12: 0.0115 REMARK 3 T13: -0.0191 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.3828 L22: 2.5477 REMARK 3 L33: 0.7828 L12: -0.1015 REMARK 3 L13: -0.0510 L23: -0.0317 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: 0.0945 S13: -0.1627 REMARK 3 S21: 0.4530 S22: 0.0062 S23: 0.0235 REMARK 3 S31: 0.1077 S32: 0.1820 S33: -0.0788 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ACP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YNT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19.8% POLYETHYLENE GLYCOL (PEG) 10K REMARK 280 AND 0.1 M SODIUM CACODYLATE, PH 6.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.80950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 LYS A 20 REMARK 465 ASN A 21 REMARK 465 VAL A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PHE A 25 REMARK 465 LEU A 26 REMARK 465 ILE A 27 REMARK 465 LEU A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 LEU A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 LEU A 35 REMARK 465 ALA A 36 REMARK 465 GLN A 37 REMARK 465 LYS A 296 REMARK 465 LEU A 297 REMARK 465 MET A 298 REMARK 465 GLN A 299 REMARK 465 PRO A 300 REMARK 465 THR A 301 REMARK 465 ALA A 302 REMARK 465 GLU A 303 REMARK 465 ALA A 304 REMARK 465 SER A 305 REMARK 465 ALA A 306 REMARK 465 ASP A 307 REMARK 465 MET B 19 REMARK 465 LYS B 20 REMARK 465 ASN B 21 REMARK 465 VAL B 22 REMARK 465 LEU B 23 REMARK 465 VAL B 24 REMARK 465 PHE B 25 REMARK 465 LEU B 26 REMARK 465 ILE B 27 REMARK 465 LEU B 28 REMARK 465 LEU B 29 REMARK 465 VAL B 30 REMARK 465 ALA B 31 REMARK 465 LEU B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 LEU B 35 REMARK 465 ALA B 36 REMARK 465 GLN B 37 REMARK 465 GLY B 38 REMARK 465 HIS B 39 REMARK 465 LYS B 296 REMARK 465 LEU B 297 REMARK 465 MET B 298 REMARK 465 GLN B 299 REMARK 465 PRO B 300 REMARK 465 THR B 301 REMARK 465 ALA B 302 REMARK 465 GLU B 303 REMARK 465 ALA B 304 REMARK 465 SER B 305 REMARK 465 ALA B 306 REMARK 465 ASP B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 TYR A 64 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 64 OH REMARK 470 GLN A 79 OE1 REMARK 470 LYS A 126 NZ REMARK 470 LYS A 173 NZ REMARK 470 GLU A 227 OE2 REMARK 470 GLU A 229 CD REMARK 470 LYS A 265 CD REMARK 470 LYS B 47 NZ REMARK 470 LYS B 59 CE NZ REMARK 470 ASN B 60 CB CG OD1 ND2 REMARK 470 ILE B 61 CD1 REMARK 470 ASN B 78 CG OD1 ND2 REMARK 470 TRP B 87 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 470 TRP B 87 CZ2 CZ3 CH2 REMARK 470 LYS B 126 NZ REMARK 470 GLU B 227 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 230 N GLY B 232 2.11 REMARK 500 NE2 HIS A 170 O HOH A 2056 2.11 REMARK 500 O THR B 122 O HOH B 2014 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 -117.11 51.93 REMARK 500 ASP A 84 130.69 66.77 REMARK 500 HIS A 116 -173.90 -170.77 REMARK 500 TYR B 64 -45.66 -160.14 REMARK 500 ASN B 77 -123.79 55.04 REMARK 500 ASP B 84 121.64 62.32 REMARK 500 ASP B 120 -34.12 -39.30 REMARK 500 ASN B 184 -0.05 69.04 REMARK 500 GLU B 227 27.36 110.06 REMARK 500 LEU B 231 3.06 -26.72 REMARK 500 SER B 238 73.42 -114.62 REMARK 500 PRO B 255 66.07 -69.02 REMARK 500 SER B 292 -38.50 -173.35 REMARK 500 SER B 292 -36.97 -173.57 REMARK 500 SER B 294 34.60 -88.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 226 GLU B 227 -146.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1296 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 99.1 REMARK 620 3 HIS A 196 NE2 109.3 112.2 REMARK 620 4 HOH A2039 O 106.1 113.1 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1297 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 OCS A 221 SG 109.6 REMARK 620 3 HIS A 263 NE2 118.8 95.5 REMARK 620 4 HOH A2039 O 95.8 85.7 142.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1298 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 139 OG REMARK 620 2 ASP A 199 O 112.2 REMARK 620 3 HOH A2099 O 109.3 137.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1296 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 102.2 REMARK 620 3 HIS B 196 NE2 102.9 111.6 REMARK 620 4 HOH B2009 O 102.1 144.4 87.8 REMARK 620 5 HOH B2011 O 160.4 90.5 85.8 60.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1296 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ACQ RELATED DB: PDB REMARK 900 W228A-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACR RELATED DB: PDB REMARK 900 W228Y-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACS RELATED DB: PDB REMARK 900 Y233A-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACT RELATED DB: PDB REMARK 900 W228S-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 DBREF 5ACP A 19 307 UNP Q704V1 Q704V1_PSEAI 1 250 DBREF 5ACP B 19 307 UNP Q704V1 Q704V1_PSEAI 1 250 SEQADV 5ACP ARG A 228 UNP Q704V1 TRP 182 ENGINEERED MUTATION SEQADV 5ACP ARG B 228 UNP Q704V1 TRP 182 ENGINEERED MUTATION SEQRES 1 A 250 MET LYS ASN VAL LEU VAL PHE LEU ILE LEU LEU VAL ALA SEQRES 2 A 250 LEU PRO ALA LEU ALA GLN GLY HIS LYS PRO LEU GLU VAL SEQRES 3 A 250 ILE LYS ILE GLU ASP GLY VAL TYR LEU HIS THR SER PHE SEQRES 4 A 250 LYS ASN ILE GLU GLY TYR GLY LEU VAL ASP SER ASN GLY SEQRES 5 A 250 LEU VAL VAL LEU ASP ASN ASN GLN ALA TYR ILE ILE ASP SEQRES 6 A 250 THR PRO TRP SER GLU GLU ASP THR LYS LEU LEU LEU SER SEQRES 7 A 250 TRP ALA THR ASP ARG GLY TYR GLN VAL MET ALA SER ILE SEQRES 8 A 250 SER THR HIS SER HIS GLU ASP ARG THR ALA GLY ILE LYS SEQRES 9 A 250 LEU LEU ASN SER LYS SER ILE PRO THR TYR THR SER GLU SEQRES 10 A 250 LEU THR LYS LYS LEU LEU ALA ARG GLU GLY LYS PRO VAL SEQRES 11 A 250 PRO THR HIS TYR PHE LYS ASP ASP GLU PHE THR LEU GLY SEQRES 12 A 250 ASN GLY LEU ILE GLU LEU TYR TYR PRO GLY ALA GLY HIS SEQRES 13 A 250 THR GLU ASP ASN ILE VAL ALA TRP LEU PRO LYS SER LYS SEQRES 14 A 250 ILE LEU PHE GLY GLY OCS LEU VAL ARG SER HIS GLU ARG SEQRES 15 A 250 GLU GLY LEU GLY TYR VAL GLY ASP ALA SER ILE SER SER SEQRES 16 A 250 TRP ALA ASP SER ILE LYS ASN ILE VAL SER LYS LYS TYR SEQRES 17 A 250 PRO ILE GLN MET VAL VAL PRO GLY HIS GLY LYS VAL GLY SEQRES 18 A 250 SER SER ASP ILE LEU ASP HIS THR ILE ASP LEU ALA GLU SEQRES 19 A 250 SER ALA SER ASN LYS LEU MET GLN PRO THR ALA GLU ALA SEQRES 20 A 250 SER ALA ASP SEQRES 1 B 250 MET LYS ASN VAL LEU VAL PHE LEU ILE LEU LEU VAL ALA SEQRES 2 B 250 LEU PRO ALA LEU ALA GLN GLY HIS LYS PRO LEU GLU VAL SEQRES 3 B 250 ILE LYS ILE GLU ASP GLY VAL TYR LEU HIS THR SER PHE SEQRES 4 B 250 LYS ASN ILE GLU GLY TYR GLY LEU VAL ASP SER ASN GLY SEQRES 5 B 250 LEU VAL VAL LEU ASP ASN ASN GLN ALA TYR ILE ILE ASP SEQRES 6 B 250 THR PRO TRP SER GLU GLU ASP THR LYS LEU LEU LEU SER SEQRES 7 B 250 TRP ALA THR ASP ARG GLY TYR GLN VAL MET ALA SER ILE SEQRES 8 B 250 SER THR HIS SER HIS GLU ASP ARG THR ALA GLY ILE LYS SEQRES 9 B 250 LEU LEU ASN SER LYS SER ILE PRO THR TYR THR SER GLU SEQRES 10 B 250 LEU THR LYS LYS LEU LEU ALA ARG GLU GLY LYS PRO VAL SEQRES 11 B 250 PRO THR HIS TYR PHE LYS ASP ASP GLU PHE THR LEU GLY SEQRES 12 B 250 ASN GLY LEU ILE GLU LEU TYR TYR PRO GLY ALA GLY HIS SEQRES 13 B 250 THR GLU ASP ASN ILE VAL ALA TRP LEU PRO LYS SER LYS SEQRES 14 B 250 ILE LEU PHE GLY GLY OCS LEU VAL ARG SER HIS GLU ARG SEQRES 15 B 250 GLU GLY LEU GLY TYR VAL GLY ASP ALA SER ILE SER SER SEQRES 16 B 250 TRP ALA ASP SER ILE LYS ASN ILE VAL SER LYS LYS TYR SEQRES 17 B 250 PRO ILE GLN MET VAL VAL PRO GLY HIS GLY LYS VAL GLY SEQRES 18 B 250 SER SER ASP ILE LEU ASP HIS THR ILE ASP LEU ALA GLU SEQRES 19 B 250 SER ALA SER ASN LYS LEU MET GLN PRO THR ALA GLU ALA SEQRES 20 B 250 SER ALA ASP MODRES 5ACP OCS A 221 CYS CYSTEINESULFONIC ACID MODRES 5ACP OCS B 221 CYS CYSTEINESULFONIC ACID HET OCS A 221 12 HET OCS B 221 12 HET ZN A1296 1 HET ZN A1297 1 HET MG A1298 1 HET ZN B1296 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 ZN 3(ZN 2+) FORMUL 5 MG MG 2+ FORMUL 7 HOH *131(H2 O) HELIX 1 1 SER A 88 ARG A 104 1 15 HELIX 2 2 HIS A 118 ALA A 123 1 6 HELIX 3 3 GLY A 124 LYS A 131 1 8 HELIX 4 4 GLU A 140 GLU A 149 1 10 HELIX 5 5 OCS A 221 VAL A 223 5 3 HELIX 6 6 SER A 238 LYS A 252 1 15 HELIX 7 7 SER A 280 ASN A 295 1 16 HELIX 8 8 SER B 88 ARG B 104 1 15 HELIX 9 9 HIS B 118 ALA B 123 1 6 HELIX 10 10 GLY B 124 LYS B 131 1 8 HELIX 11 11 GLU B 140 GLU B 149 1 10 HELIX 12 12 OCS B 221 VAL B 223 5 3 HELIX 13 13 SER B 238 LYS B 252 1 15 HELIX 14 14 SER B 280 SER B 294 1 15 SHEET 1 AA 7 GLU A 43 GLU A 49 0 SHEET 2 AA 7 VAL A 52 ILE A 61 -1 O VAL A 52 N ILE A 48 SHEET 3 AA 7 GLY A 65 ASP A 76 -1 O GLY A 65 N ILE A 61 SHEET 4 AA 7 GLN A 79 ILE A 83 -1 O GLN A 79 N ASP A 76 SHEET 5 AA 7 GLN A 107 ILE A 113 1 O GLN A 107 N ALA A 80 SHEET 6 AA 7 THR A 136 SER A 139 1 N TYR A 137 O SER A 112 SHEET 7 AA 7 HIS A 170 PHE A 172 1 O HIS A 170 N THR A 138 SHEET 1 AB 5 GLU A 179 LEU A 182 0 SHEET 2 AB 5 ILE A 187 TYR A 190 -1 O ILE A 187 N LEU A 182 SHEET 3 AB 5 VAL A 202 LEU A 205 -1 O VAL A 202 N TYR A 190 SHEET 4 AB 5 ILE A 216 GLY A 220 -1 O ILE A 216 N LEU A 205 SHEET 5 AB 5 MET A 258 PRO A 261 1 O MET A 258 N LEU A 217 SHEET 1 BA 7 GLU B 43 GLU B 49 0 SHEET 2 BA 7 VAL B 52 ILE B 61 -1 O VAL B 52 N ILE B 48 SHEET 3 BA 7 GLY B 65 ASP B 76 -1 O GLY B 65 N ILE B 61 SHEET 4 BA 7 GLN B 79 ILE B 83 -1 O GLN B 79 N ASP B 76 SHEET 5 BA 7 GLN B 107 ILE B 113 1 O GLN B 107 N ALA B 80 SHEET 6 BA 7 THR B 136 SER B 139 1 N TYR B 137 O SER B 112 SHEET 7 BA 7 HIS B 170 PHE B 172 1 O HIS B 170 N THR B 138 SHEET 1 BB 5 GLU B 179 LEU B 182 0 SHEET 2 BB 5 ILE B 187 TYR B 190 -1 O ILE B 187 N LEU B 182 SHEET 3 BB 5 VAL B 202 LEU B 205 -1 O VAL B 202 N TYR B 190 SHEET 4 BB 5 ILE B 216 GLY B 220 -1 O ILE B 216 N LEU B 205 SHEET 5 BB 5 MET B 258 PRO B 261 1 O MET B 258 N LEU B 217 LINK C GLY A 220 N OCS A 221 1555 1555 1.33 LINK C OCS A 221 N LEU A 222 1555 1555 1.33 LINK C GLY B 220 N OCS B 221 1555 1555 1.33 LINK C OCS B 221 N LEU B 222 1555 1555 1.33 LINK NE2 HIS A 116 ZN ZN A1296 1555 1555 2.28 LINK ND1 HIS A 118 ZN ZN A1296 1555 1555 2.06 LINK OD2 ASP A 120 ZN ZN A1297 1555 1555 1.82 LINK OG SER A 139 MG MG A1298 1555 1555 2.54 LINK NE2 HIS A 196 ZN ZN A1296 1555 1555 2.02 LINK O ASP A 199 MG MG A1298 1555 1555 2.71 LINK SG OCS A 221 ZN ZN A1297 1555 1555 2.73 LINK NE2 HIS A 263 ZN ZN A1297 1555 1555 2.08 LINK ZN ZN A1296 O HOH A2039 1555 1555 1.90 LINK ZN ZN A1297 O HOH A2039 1555 1555 2.47 LINK MG MG A1298 O HOH A2099 1555 1555 2.80 LINK NE2 HIS B 116 ZN ZN B1296 1555 1555 2.17 LINK ND1 HIS B 118 ZN ZN B1296 1555 1555 1.94 LINK NE2 HIS B 196 ZN ZN B1296 1555 1555 2.03 LINK ZN ZN B1296 O HOH B2009 1555 1555 2.03 LINK ZN ZN B1296 O HOH B2011 1555 1555 2.66 SITE 1 AC1 5 HIS A 116 HIS A 118 HIS A 196 OCS A 221 SITE 2 AC1 5 HOH A2039 SITE 1 AC2 6 ASP A 120 ARG A 121 OCS A 221 HIS A 263 SITE 2 AC2 6 HOH A2039 GLY B 63 SITE 1 AC3 3 SER A 139 ASP A 199 HOH A2099 SITE 1 AC4 5 HIS B 116 HIS B 118 HIS B 196 HOH B2009 SITE 2 AC4 5 HOH B2011 CRYST1 38.757 133.619 40.702 90.00 95.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025802 0.000000 0.002375 0.00000 SCALE2 0.000000 0.007484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024673 0.00000