HEADER HYDROLASE 17-AUG-15 5ACS TITLE Y233A-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN THE TITLE 2 METALLO-BETA-LACTAMASE GIM-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GIM-1 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-LACTAMASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR PRARE KEYWDS HYDROLASE, METALLO-BETA-LACTAMASE, GIM-1, CARBAPENEMASE, ENZYME KEYWDS 2 KINETICS, MIC EXPDTA X-RAY DIFFRACTION AUTHOR S.SKAGSETH,T.J.CARLSEN,G.E.K.BJERGA,J.SPENCER,O.SAMUELSEN,H.- AUTHOR 2 K.S.LEIROS REVDAT 4 10-JAN-24 5ACS 1 REMARK LINK REVDAT 3 23-OCT-19 5ACS 1 REMARK ATOM REVDAT 2 10-FEB-16 5ACS 1 JRNL REVDAT 1 23-DEC-15 5ACS 0 JRNL AUTH S.SKAGSETH,T.J.CARLSEN,G.E.K.BJERGA,J.SPENCER,O.SAMUELSEN, JRNL AUTH 2 H.S.LEIROS JRNL TITL ROLE OF RESIDUES W228 AND Y233 IN THE STRUCTURE AND ACTIVITY JRNL TITL 2 OF METALLO-BETA-LACTAMASE GIM-1. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 60 990 2015 JRNL REFN ISSN 0066-4804 JRNL PMID 26643332 JRNL DOI 10.1128/AAC.02017-15 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 68632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9181 - 3.5949 1.00 4552 145 0.1380 0.1562 REMARK 3 2 3.5949 - 2.8547 1.00 4538 138 0.1353 0.1656 REMARK 3 3 2.8547 - 2.4942 1.00 4516 140 0.1263 0.1569 REMARK 3 4 2.4942 - 2.2663 1.00 4448 145 0.1167 0.1679 REMARK 3 5 2.2663 - 2.1040 1.00 4539 141 0.1074 0.1674 REMARK 3 6 2.1040 - 1.9800 0.99 4506 116 0.1021 0.1422 REMARK 3 7 1.9800 - 1.8809 0.99 4445 162 0.1022 0.1358 REMARK 3 8 1.8809 - 1.7990 0.98 4464 114 0.1068 0.1561 REMARK 3 9 1.7990 - 1.7298 0.98 4392 140 0.1166 0.1883 REMARK 3 10 1.7298 - 1.6701 0.98 4381 150 0.1232 0.2019 REMARK 3 11 1.6701 - 1.6179 0.98 4450 127 0.1297 0.1841 REMARK 3 12 1.6179 - 1.5716 0.98 4391 134 0.1461 0.2100 REMARK 3 13 1.5716 - 1.5303 0.97 4322 145 0.1675 0.2377 REMARK 3 14 1.5303 - 1.4929 0.96 4358 143 0.1856 0.2587 REMARK 3 15 1.4929 - 1.4590 0.95 4250 140 0.2151 0.2764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3486 REMARK 3 ANGLE : 0.995 4743 REMARK 3 CHIRALITY : 0.060 531 REMARK 3 PLANARITY : 0.005 597 REMARK 3 DIHEDRAL : 12.706 1253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ACS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.240 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YNT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 4000, 0.1 M HEPES PH 7.0 AND REMARK 280 POTASSIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 65.61100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 LYS A 20 REMARK 465 ASN A 21 REMARK 465 VAL A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PHE A 25 REMARK 465 LEU A 26 REMARK 465 ILE A 27 REMARK 465 LEU A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 LEU A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 LEU A 35 REMARK 465 ALA A 36 REMARK 465 GLN A 37 REMARK 465 GLY A 38 REMARK 465 HIS A 39 REMARK 465 LEU A 297 REMARK 465 MET A 298 REMARK 465 GLN A 299 REMARK 465 PRO A 300 REMARK 465 THR A 301 REMARK 465 ALA A 302 REMARK 465 GLU A 303 REMARK 465 ALA A 304 REMARK 465 SER A 305 REMARK 465 ALA A 306 REMARK 465 ASP A 307 REMARK 465 MET B 19 REMARK 465 LYS B 20 REMARK 465 ASN B 21 REMARK 465 VAL B 22 REMARK 465 LEU B 23 REMARK 465 VAL B 24 REMARK 465 PHE B 25 REMARK 465 LEU B 26 REMARK 465 ILE B 27 REMARK 465 LEU B 28 REMARK 465 LEU B 29 REMARK 465 VAL B 30 REMARK 465 ALA B 31 REMARK 465 LEU B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 LEU B 35 REMARK 465 ALA B 36 REMARK 465 GLN B 37 REMARK 465 GLY B 38 REMARK 465 HIS B 39 REMARK 465 LYS B 296 REMARK 465 LEU B 297 REMARK 465 MET B 298 REMARK 465 GLN B 299 REMARK 465 PRO B 300 REMARK 465 THR B 301 REMARK 465 ALA B 302 REMARK 465 GLU B 303 REMARK 465 ALA B 304 REMARK 465 SER B 305 REMARK 465 ALA B 306 REMARK 465 ASP B 307 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 61 CG2 CD1 REMARK 480 TRP B 228 CZ2 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2103 O HOH A 2111 1.85 REMARK 500 OE1 GLN B 257 O HOH B 2199 2.09 REMARK 500 OE2 GLU A 227 O HOH A 2199 2.10 REMARK 500 O HOH B 2196 O HOH B 2198 2.17 REMARK 500 N LYS A 40 O HOH A 2001 2.18 REMARK 500 OE2 GLU A 229 O HOH A 2202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2184 O HOH B 2044 2656 1.89 REMARK 500 OE1 GLN A 257 O HOH B 2137 2655 2.00 REMARK 500 O HOH A 2185 O HOH B 2192 2655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 -121.05 50.66 REMARK 500 ASP A 84 133.05 71.19 REMARK 500 PRO A 86 172.84 -59.33 REMARK 500 ASN B 77 -119.25 55.32 REMARK 500 ASP B 84 132.07 70.95 REMARK 500 PRO B 86 175.22 -58.76 REMARK 500 ASN B 184 77.56 -102.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2046 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B2044 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1297 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 96.6 REMARK 620 3 HIS A 196 NE2 103.8 116.5 REMARK 620 4 HOH A2103 O 104.8 126.0 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1298 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 115.1 REMARK 620 3 HIS A 263 NE2 92.6 110.6 REMARK 620 4 HOH A2103 O 90.2 106.0 138.0 REMARK 620 5 HOH A2111 O 111.5 127.7 89.2 51.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1296 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 98.5 REMARK 620 3 HIS B 196 NE2 105.5 113.9 REMARK 620 4 HOH B2075 O 113.0 117.8 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1297 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 CYS B 221 SG 114.0 REMARK 620 3 HIS B 263 NE2 91.9 110.7 REMARK 620 4 HOH B2075 O 93.0 111.1 131.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1297 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ACP RELATED DB: PDB REMARK 900 W228R-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACQ RELATED DB: PDB REMARK 900 W228A-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACR RELATED DB: PDB REMARK 900 W228Y-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACT RELATED DB: PDB REMARK 900 W228S-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 DBREF 5ACS A 19 307 UNP Q704V1 Q704V1_PSEAI 1 250 DBREF 5ACS B 19 307 UNP Q704V1 Q704V1_PSEAI 1 250 SEQADV 5ACS ALA A 233 UNP Q704V1 TYR 187 ENGINEERED MUTATION SEQADV 5ACS ALA B 233 UNP Q704V1 TYR 187 ENGINEERED MUTATION SEQRES 1 A 250 MET LYS ASN VAL LEU VAL PHE LEU ILE LEU LEU VAL ALA SEQRES 2 A 250 LEU PRO ALA LEU ALA GLN GLY HIS LYS PRO LEU GLU VAL SEQRES 3 A 250 ILE LYS ILE GLU ASP GLY VAL TYR LEU HIS THR SER PHE SEQRES 4 A 250 LYS ASN ILE GLU GLY TYR GLY LEU VAL ASP SER ASN GLY SEQRES 5 A 250 LEU VAL VAL LEU ASP ASN ASN GLN ALA TYR ILE ILE ASP SEQRES 6 A 250 THR PRO TRP SER GLU GLU ASP THR LYS LEU LEU LEU SER SEQRES 7 A 250 TRP ALA THR ASP ARG GLY TYR GLN VAL MET ALA SER ILE SEQRES 8 A 250 SER THR HIS SER HIS GLU ASP ARG THR ALA GLY ILE LYS SEQRES 9 A 250 LEU LEU ASN SER LYS SER ILE PRO THR TYR THR SER GLU SEQRES 10 A 250 LEU THR LYS LYS LEU LEU ALA ARG GLU GLY LYS PRO VAL SEQRES 11 A 250 PRO THR HIS TYR PHE LYS ASP ASP GLU PHE THR LEU GLY SEQRES 12 A 250 ASN GLY LEU ILE GLU LEU TYR TYR PRO GLY ALA GLY HIS SEQRES 13 A 250 THR GLU ASP ASN ILE VAL ALA TRP LEU PRO LYS SER LYS SEQRES 14 A 250 ILE LEU PHE GLY GLY CYS LEU VAL ARG SER HIS GLU TRP SEQRES 15 A 250 GLU GLY LEU GLY ALA VAL GLY ASP ALA SER ILE SER SER SEQRES 16 A 250 TRP ALA ASP SER ILE LYS ASN ILE VAL SER LYS LYS TYR SEQRES 17 A 250 PRO ILE GLN MET VAL VAL PRO GLY HIS GLY LYS VAL GLY SEQRES 18 A 250 SER SER ASP ILE LEU ASP HIS THR ILE ASP LEU ALA GLU SEQRES 19 A 250 SER ALA SER ASN LYS LEU MET GLN PRO THR ALA GLU ALA SEQRES 20 A 250 SER ALA ASP SEQRES 1 B 250 MET LYS ASN VAL LEU VAL PHE LEU ILE LEU LEU VAL ALA SEQRES 2 B 250 LEU PRO ALA LEU ALA GLN GLY HIS LYS PRO LEU GLU VAL SEQRES 3 B 250 ILE LYS ILE GLU ASP GLY VAL TYR LEU HIS THR SER PHE SEQRES 4 B 250 LYS ASN ILE GLU GLY TYR GLY LEU VAL ASP SER ASN GLY SEQRES 5 B 250 LEU VAL VAL LEU ASP ASN ASN GLN ALA TYR ILE ILE ASP SEQRES 6 B 250 THR PRO TRP SER GLU GLU ASP THR LYS LEU LEU LEU SER SEQRES 7 B 250 TRP ALA THR ASP ARG GLY TYR GLN VAL MET ALA SER ILE SEQRES 8 B 250 SER THR HIS SER HIS GLU ASP ARG THR ALA GLY ILE LYS SEQRES 9 B 250 LEU LEU ASN SER LYS SER ILE PRO THR TYR THR SER GLU SEQRES 10 B 250 LEU THR LYS LYS LEU LEU ALA ARG GLU GLY LYS PRO VAL SEQRES 11 B 250 PRO THR HIS TYR PHE LYS ASP ASP GLU PHE THR LEU GLY SEQRES 12 B 250 ASN GLY LEU ILE GLU LEU TYR TYR PRO GLY ALA GLY HIS SEQRES 13 B 250 THR GLU ASP ASN ILE VAL ALA TRP LEU PRO LYS SER LYS SEQRES 14 B 250 ILE LEU PHE GLY GLY CYS LEU VAL ARG SER HIS GLU TRP SEQRES 15 B 250 GLU GLY LEU GLY ALA VAL GLY ASP ALA SER ILE SER SER SEQRES 16 B 250 TRP ALA ASP SER ILE LYS ASN ILE VAL SER LYS LYS TYR SEQRES 17 B 250 PRO ILE GLN MET VAL VAL PRO GLY HIS GLY LYS VAL GLY SEQRES 18 B 250 SER SER ASP ILE LEU ASP HIS THR ILE ASP LEU ALA GLU SEQRES 19 B 250 SER ALA SER ASN LYS LEU MET GLN PRO THR ALA GLU ALA SEQRES 20 B 250 SER ALA ASP HET ZN A1297 1 HET ZN A1298 1 HET ZN B1296 1 HET ZN B1297 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *472(H2 O) HELIX 1 1 SER A 88 ARG A 104 1 15 HELIX 2 2 HIS A 118 ALA A 123 1 6 HELIX 3 3 GLY A 124 LYS A 131 1 8 HELIX 4 4 GLU A 140 GLU A 149 1 10 HELIX 5 5 CYS A 221 VAL A 223 5 3 HELIX 6 6 SER A 238 LYS A 252 1 15 HELIX 7 7 SER A 280 LYS A 296 1 17 HELIX 8 8 SER B 88 ARG B 104 1 15 HELIX 9 9 HIS B 118 ALA B 123 1 6 HELIX 10 10 GLY B 124 LYS B 131 1 8 HELIX 11 11 GLU B 140 GLU B 149 1 10 HELIX 12 12 CYS B 221 VAL B 223 5 3 HELIX 13 13 SER B 238 LYS B 252 1 15 HELIX 14 14 SER B 280 ASN B 295 1 16 SHEET 1 AA 7 GLU A 43 GLU A 49 0 SHEET 2 AA 7 VAL A 52 ILE A 61 -1 O VAL A 52 N ILE A 48 SHEET 3 AA 7 GLY A 65 ASP A 76 -1 O GLY A 65 N ILE A 61 SHEET 4 AA 7 GLN A 79 ILE A 83 -1 O GLN A 79 N ASP A 76 SHEET 5 AA 7 GLN A 107 ILE A 113 1 O GLN A 107 N ALA A 80 SHEET 6 AA 7 THR A 136 SER A 139 1 N TYR A 137 O SER A 112 SHEET 7 AA 7 HIS A 170 PHE A 172 1 O HIS A 170 N THR A 138 SHEET 1 AB 5 GLU A 179 LEU A 182 0 SHEET 2 AB 5 ILE A 187 TYR A 190 -1 O ILE A 187 N LEU A 182 SHEET 3 AB 5 VAL A 202 LEU A 205 -1 O VAL A 202 N TYR A 190 SHEET 4 AB 5 ILE A 216 GLY A 220 -1 O ILE A 216 N LEU A 205 SHEET 5 AB 5 MET A 258 PRO A 261 1 O MET A 258 N LEU A 217 SHEET 1 BA 7 GLU B 43 GLU B 49 0 SHEET 2 BA 7 VAL B 52 ILE B 61 -1 O VAL B 52 N ILE B 48 SHEET 3 BA 7 GLY B 65 ASP B 76 -1 O GLY B 65 N ILE B 61 SHEET 4 BA 7 GLN B 79 ILE B 83 -1 O GLN B 79 N ASP B 76 SHEET 5 BA 7 GLN B 107 ILE B 113 1 O GLN B 107 N ALA B 80 SHEET 6 BA 7 THR B 136 SER B 139 1 N TYR B 137 O SER B 112 SHEET 7 BA 7 HIS B 170 PHE B 172 1 O HIS B 170 N THR B 138 SHEET 1 BB 5 GLU B 179 LEU B 182 0 SHEET 2 BB 5 ILE B 187 TYR B 190 -1 O ILE B 187 N LEU B 182 SHEET 3 BB 5 VAL B 202 LEU B 205 -1 O VAL B 202 N TYR B 190 SHEET 4 BB 5 ILE B 216 GLY B 220 -1 O ILE B 216 N LEU B 205 SHEET 5 BB 5 MET B 258 PRO B 261 1 O MET B 258 N LEU B 217 LINK NE2 HIS A 116 ZN ZN A1297 1555 1555 2.07 LINK ND1 HIS A 118 ZN ZN A1297 1555 1555 2.00 LINK OD2 ASP A 120 ZN ZN A1298 1555 1555 1.99 LINK NE2 HIS A 196 ZN ZN A1297 1555 1555 2.02 LINK SG CYS A 221 ZN ZN A1298 1555 1555 2.25 LINK NE2 HIS A 263 ZN ZN A1298 1555 1555 2.08 LINK ZN ZN A1297 O HOH A2103 1555 1555 2.12 LINK ZN ZN A1298 O HOH A2103 1555 1555 2.17 LINK ZN ZN A1298 O HOH A2111 1555 1555 2.10 LINK NE2 HIS B 116 ZN ZN B1296 1555 1555 2.02 LINK ND1 HIS B 118 ZN ZN B1296 1555 1555 2.01 LINK OD2 ASP B 120 ZN ZN B1297 1555 1555 2.01 LINK NE2 HIS B 196 ZN ZN B1296 1555 1555 1.99 LINK SG CYS B 221 ZN ZN B1297 1555 1555 2.19 LINK NE2 HIS B 263 ZN ZN B1297 1555 1555 2.09 LINK ZN ZN B1296 O HOH B2075 1555 1555 2.04 LINK ZN ZN B1297 O HOH B2075 1555 1555 2.07 SITE 1 AC1 5 HIS A 116 HIS A 118 HIS A 196 HOH A2103 SITE 2 AC1 5 HOH A2107 SITE 1 AC2 5 ASP A 120 CYS A 221 HIS A 263 HOH A2103 SITE 2 AC2 5 HOH A2111 SITE 1 AC3 5 HOH A2037 HIS B 116 HIS B 118 HIS B 196 SITE 2 AC3 5 HOH B2075 SITE 1 AC4 4 ASP B 120 CYS B 221 HIS B 263 HOH B2075 CRYST1 38.434 131.222 40.842 90.00 94.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026019 0.000000 0.002199 0.00000 SCALE2 0.000000 0.007621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024572 0.00000