HEADER HYDROLASE 17-AUG-15 5ACT TITLE W228S-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN THE TITLE 2 METALLO-BETA-LACTAMASE GIM-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GIM-1 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-LACTAMASE, METALLO-BETA-LACTAMASE GIM-1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR PRARE KEYWDS HYDROLASE, METALLO-BETA-LACTAMASE, GIM-1, CARBAPENEMASE, ENZYME KEYWDS 2 KINETICS, MIC EXPDTA X-RAY DIFFRACTION AUTHOR S.SKAGSETH,T.J.CARLSEN,G.E.K.BJERGA,J.SPENCER,O.SAMUELSEN,H.- AUTHOR 2 K.S.LEIROS REVDAT 4 10-JAN-24 5ACT 1 REMARK LINK REVDAT 3 23-OCT-19 5ACT 1 LINK ATOM REVDAT 2 10-FEB-16 5ACT 1 JRNL REVDAT 1 23-DEC-15 5ACT 0 JRNL AUTH S.SKAGSETH,T.J.CARLSEN,G.E.K.BJERGA,J.SPENCER,O.SAMUELSEN, JRNL AUTH 2 H.S.LEIROS JRNL TITL ROLE OF RESIDUES W228 AND Y233 IN THE STRUCTURE AND ACTIVITY JRNL TITL 2 OF METALLO-BETA-LACTAMASE GIM-1. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 60 990 2015 JRNL REFN ISSN 0066-4804 JRNL PMID 26643332 JRNL DOI 10.1128/AAC.02017-15 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 36939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8249 - 4.2494 0.99 2713 153 0.1442 0.1861 REMARK 3 2 4.2494 - 3.3756 0.99 2722 129 0.1539 0.2154 REMARK 3 3 3.3756 - 2.9496 0.99 2681 149 0.1873 0.2262 REMARK 3 4 2.9496 - 2.6803 0.99 2691 153 0.2015 0.2416 REMARK 3 5 2.6803 - 2.4884 0.99 2721 148 0.1936 0.2458 REMARK 3 6 2.4884 - 2.3418 0.99 2692 141 0.1965 0.2523 REMARK 3 7 2.3418 - 2.2246 0.99 2705 145 0.1962 0.2570 REMARK 3 8 2.2246 - 2.1278 0.99 2676 135 0.2067 0.2739 REMARK 3 9 2.1278 - 2.0459 0.99 2680 133 0.2149 0.2747 REMARK 3 10 2.0459 - 1.9754 1.00 2766 132 0.2174 0.2993 REMARK 3 11 1.9754 - 1.9136 0.98 2633 144 0.2355 0.2883 REMARK 3 12 1.9136 - 1.8589 0.99 2676 142 0.2543 0.3128 REMARK 3 13 1.8589 - 1.8100 0.99 2735 144 0.2551 0.2921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3521 REMARK 3 ANGLE : 1.387 4793 REMARK 3 CHIRALITY : 0.060 538 REMARK 3 PLANARITY : 0.007 609 REMARK 3 DIHEDRAL : 15.604 1275 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.8421 17.8723 54.7884 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.2506 REMARK 3 T33: 0.3099 T12: -0.0126 REMARK 3 T13: 0.0379 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 0.5253 L22: 0.4607 REMARK 3 L33: 1.1072 L12: -0.2344 REMARK 3 L13: -0.1327 L23: -0.6678 REMARK 3 S TENSOR REMARK 3 S11: -0.1447 S12: 0.0213 S13: -0.1726 REMARK 3 S21: -0.2477 S22: 0.3695 S23: -0.0391 REMARK 3 S31: -0.0568 S32: 0.3151 S33: 0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.8973 20.3738 65.2324 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.3693 REMARK 3 T33: 0.2341 T12: -0.0068 REMARK 3 T13: 0.0019 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.3571 L22: 0.3509 REMARK 3 L33: 0.6381 L12: -0.3906 REMARK 3 L13: -0.0044 L23: 0.2222 REMARK 3 S TENSOR REMARK 3 S11: 0.0836 S12: -0.2412 S13: -0.0855 REMARK 3 S21: -0.0269 S22: -0.0362 S23: -0.0905 REMARK 3 S31: 0.0222 S32: 0.0120 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -73.4076 25.7405 56.5476 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.2366 REMARK 3 T33: 0.1747 T12: 0.0329 REMARK 3 T13: 0.0104 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.1909 L22: 0.5642 REMARK 3 L33: 1.4534 L12: 0.1472 REMARK 3 L13: -0.5236 L23: -0.0852 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: 0.0385 S13: 0.0443 REMARK 3 S21: -0.1493 S22: -0.0688 S23: 0.0505 REMARK 3 S31: -0.1763 S32: -0.2194 S33: -0.0013 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -76.9943 -10.0865 49.5581 REMARK 3 T TENSOR REMARK 3 T11: 0.2925 T22: 0.2631 REMARK 3 T33: 0.4918 T12: -0.0746 REMARK 3 T13: -0.0843 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 0.4977 L22: 0.6027 REMARK 3 L33: 1.1466 L12: 0.1038 REMARK 3 L13: -0.1003 L23: -0.2868 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: -0.2534 S13: 0.1728 REMARK 3 S21: -0.1995 S22: 0.1233 S23: 0.1477 REMARK 3 S31: 0.1256 S32: -0.2871 S33: 0.0084 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.3622 -12.3022 42.6381 REMARK 3 T TENSOR REMARK 3 T11: 0.3993 T22: 0.1862 REMARK 3 T33: 0.3313 T12: -0.0683 REMARK 3 T13: -0.0247 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.4343 L22: 1.1213 REMARK 3 L33: 1.8711 L12: -0.1529 REMARK 3 L13: -0.3172 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.0442 S13: 0.2578 REMARK 3 S21: -0.4112 S22: 0.1157 S23: -0.0752 REMARK 3 S31: 0.1430 S32: 0.1206 S33: 0.0128 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ACT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.24 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36990 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YNT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26.8% PEG MME 2K, 0.1 M TRIS, PH 7.0, REMARK 280 0.11 M POTASSIUM PHOSPHATE MONOBASIC (KH2PO4) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.50350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 LYS A 20 REMARK 465 ASN A 21 REMARK 465 VAL A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PHE A 25 REMARK 465 LEU A 26 REMARK 465 ILE A 27 REMARK 465 LEU A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 LEU A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 LEU A 35 REMARK 465 ALA A 36 REMARK 465 GLN A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 297 REMARK 465 MET A 298 REMARK 465 GLN A 299 REMARK 465 PRO A 300 REMARK 465 THR A 301 REMARK 465 ALA A 302 REMARK 465 GLU A 303 REMARK 465 ALA A 304 REMARK 465 SER A 305 REMARK 465 ALA A 306 REMARK 465 ASP A 307 REMARK 465 MET B 19 REMARK 465 LYS B 20 REMARK 465 ASN B 21 REMARK 465 VAL B 22 REMARK 465 LEU B 23 REMARK 465 VAL B 24 REMARK 465 PHE B 25 REMARK 465 LEU B 26 REMARK 465 ILE B 27 REMARK 465 LEU B 28 REMARK 465 LEU B 29 REMARK 465 VAL B 30 REMARK 465 ALA B 31 REMARK 465 LEU B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 LEU B 35 REMARK 465 ALA B 36 REMARK 465 GLN B 37 REMARK 465 LYS B 296 REMARK 465 LEU B 297 REMARK 465 MET B 298 REMARK 465 GLN B 299 REMARK 465 PRO B 300 REMARK 465 THR B 301 REMARK 465 ALA B 302 REMARK 465 GLU B 303 REMARK 465 ALA B 304 REMARK 465 SER B 305 REMARK 465 ALA B 306 REMARK 465 ASP B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 64 CD2 REMARK 470 ASN A 78 ND2 REMARK 470 GLN A 79 CD REMARK 470 GLU A 119 CD REMARK 470 ASP A 174 CG REMARK 470 GLU A 227 CD OE1 OE2 REMARK 470 GLU A 229 CD REMARK 470 HIS B 39 CA CB CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 64 CD1 REMARK 470 TRP B 87 CE2 REMARK 470 LYS B 173 CG REMARK 470 ASP B 174 CG REMARK 470 GLU B 227 O REMARK 470 GLU B 229 CD OE1 OE2 REMARK 470 LYS B 253 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 HIS A 196 ZN ZN A 1297 1.14 REMARK 500 HG SER A 133 O HOH A 2060 1.44 REMARK 500 HD21 ASN A 184 O HOH A 2087 1.47 REMARK 500 OD1 ASP B 120 O HOH B 2030 2.04 REMARK 500 O HOH A 2034 O HOH A 2074 2.16 REMARK 500 O HOH A 2126 O HOH A 2127 2.16 REMARK 500 O HOH A 2076 O HOH A 2077 2.18 REMARK 500 O HOH B 2060 O HOH B 2064 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 133 HZ1 LYS A 265 1556 1.58 REMARK 500 OG SER A 133 NZ LYS A 265 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 -116.88 46.15 REMARK 500 ASP A 84 129.12 64.43 REMARK 500 ASN B 77 -118.46 54.35 REMARK 500 ASP B 84 94.20 54.66 REMARK 500 HIS B 118 159.60 -48.11 REMARK 500 SER B 238 77.81 -109.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2073 DISTANCE = 7.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1296 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 62 OE2 REMARK 620 2 HIS B 116 NE2 104.7 REMARK 620 3 HIS B 118 ND1 118.0 107.9 REMARK 620 4 HIS B 196 NE2 113.0 94.3 115.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1297 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 104.1 REMARK 620 3 GLU B 62 OE2 104.1 116.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1296 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ACP RELATED DB: PDB REMARK 900 W228R-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACQ RELATED DB: PDB REMARK 900 W228A-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACR RELATED DB: PDB REMARK 900 W228Y-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 REMARK 900 RELATED ID: 5ACS RELATED DB: PDB REMARK 900 Y233A-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN REMARK 900 THE METALLO-BETA-LACTAMASE GIM-1 DBREF 5ACT A 19 307 UNP Q704V1 Q704V1_PSEAI 1 250 DBREF 5ACT B 19 307 UNP Q704V1 Q704V1_PSEAI 1 250 SEQADV 5ACT SER A 228 UNP Q704V1 TRP 182 ENGINEERED MUTATION SEQADV 5ACT SER B 228 UNP Q704V1 TRP 182 ENGINEERED MUTATION SEQRES 1 A 250 MET LYS ASN VAL LEU VAL PHE LEU ILE LEU LEU VAL ALA SEQRES 2 A 250 LEU PRO ALA LEU ALA GLN GLY HIS LYS PRO LEU GLU VAL SEQRES 3 A 250 ILE LYS ILE GLU ASP GLY VAL TYR LEU HIS THR SER PHE SEQRES 4 A 250 LYS ASN ILE GLU GLY TYR GLY LEU VAL ASP SER ASN GLY SEQRES 5 A 250 LEU VAL VAL LEU ASP ASN ASN GLN ALA TYR ILE ILE ASP SEQRES 6 A 250 THR PRO TRP SER GLU GLU ASP THR LYS LEU LEU LEU SER SEQRES 7 A 250 TRP ALA THR ASP ARG GLY TYR GLN VAL MET ALA SER ILE SEQRES 8 A 250 SER THR HIS SER HIS GLU ASP ARG THR ALA GLY ILE LYS SEQRES 9 A 250 LEU LEU ASN SER LYS SER ILE PRO THR TYR THR SER GLU SEQRES 10 A 250 LEU THR LYS LYS LEU LEU ALA ARG GLU GLY LYS PRO VAL SEQRES 11 A 250 PRO THR HIS TYR PHE LYS ASP ASP GLU PHE THR LEU GLY SEQRES 12 A 250 ASN GLY LEU ILE GLU LEU TYR TYR PRO GLY ALA GLY HIS SEQRES 13 A 250 THR GLU ASP ASN ILE VAL ALA TRP LEU PRO LYS SER LYS SEQRES 14 A 250 ILE LEU PHE GLY GLY OCS LEU VAL ARG SER HIS GLU SER SEQRES 15 A 250 GLU GLY LEU GLY TYR VAL GLY ASP ALA SER ILE SER SER SEQRES 16 A 250 TRP ALA ASP SER ILE LYS ASN ILE VAL SER LYS LYS TYR SEQRES 17 A 250 PRO ILE GLN MET VAL VAL PRO GLY HIS GLY LYS VAL GLY SEQRES 18 A 250 SER SER ASP ILE LEU ASP HIS THR ILE ASP LEU ALA GLU SEQRES 19 A 250 SER ALA SER ASN LYS LEU MET GLN PRO THR ALA GLU ALA SEQRES 20 A 250 SER ALA ASP SEQRES 1 B 250 MET LYS ASN VAL LEU VAL PHE LEU ILE LEU LEU VAL ALA SEQRES 2 B 250 LEU PRO ALA LEU ALA GLN GLY HIS LYS PRO LEU GLU VAL SEQRES 3 B 250 ILE LYS ILE GLU ASP GLY VAL TYR LEU HIS THR SER PHE SEQRES 4 B 250 LYS ASN ILE GLU GLY TYR GLY LEU VAL ASP SER ASN GLY SEQRES 5 B 250 LEU VAL VAL LEU ASP ASN ASN GLN ALA TYR ILE ILE ASP SEQRES 6 B 250 THR PRO TRP SER GLU GLU ASP THR LYS LEU LEU LEU SER SEQRES 7 B 250 TRP ALA THR ASP ARG GLY TYR GLN VAL MET ALA SER ILE SEQRES 8 B 250 SER THR HIS SER HIS GLU ASP ARG THR ALA GLY ILE LYS SEQRES 9 B 250 LEU LEU ASN SER LYS SER ILE PRO THR TYR THR SER GLU SEQRES 10 B 250 LEU THR LYS LYS LEU LEU ALA ARG GLU GLY LYS PRO VAL SEQRES 11 B 250 PRO THR HIS TYR PHE LYS ASP ASP GLU PHE THR LEU GLY SEQRES 12 B 250 ASN GLY LEU ILE GLU LEU TYR TYR PRO GLY ALA GLY HIS SEQRES 13 B 250 THR GLU ASP ASN ILE VAL ALA TRP LEU PRO LYS SER LYS SEQRES 14 B 250 ILE LEU PHE GLY GLY OCS LEU VAL ARG SER HIS GLU SER SEQRES 15 B 250 GLU GLY LEU GLY TYR VAL GLY ASP ALA SER ILE SER SER SEQRES 16 B 250 TRP ALA ASP SER ILE LYS ASN ILE VAL SER LYS LYS TYR SEQRES 17 B 250 PRO ILE GLN MET VAL VAL PRO GLY HIS GLY LYS VAL GLY SEQRES 18 B 250 SER SER ASP ILE LEU ASP HIS THR ILE ASP LEU ALA GLU SEQRES 19 B 250 SER ALA SER ASN LYS LEU MET GLN PRO THR ALA GLU ALA SEQRES 20 B 250 SER ALA ASP MODRES 5ACT OCS A 221 CYS CYSTEINESULFONIC ACID MODRES 5ACT OCS B 221 CYS CYSTEINESULFONIC ACID HET OCS A 221 12 HET OCS B 221 12 HET ZN A1297 1 HET ZN B1296 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *242(H2 O) HELIX 1 1 SER A 88 ARG A 104 1 15 HELIX 2 2 HIS A 118 ALA A 123 1 6 HELIX 3 3 GLY A 124 LYS A 131 1 8 HELIX 4 4 GLU A 140 GLU A 149 1 10 HELIX 5 5 OCS A 221 VAL A 223 5 3 HELIX 6 6 SER A 238 LYS A 252 1 15 HELIX 7 7 SER A 280 LYS A 296 1 17 HELIX 8 8 SER B 88 ARG B 104 1 15 HELIX 9 9 HIS B 118 ARG B 121 5 4 HELIX 10 10 THR B 122 LYS B 131 1 10 HELIX 11 11 GLU B 140 GLU B 149 1 10 HELIX 12 12 OCS B 221 VAL B 223 5 3 HELIX 13 13 SER B 238 LYS B 252 1 15 HELIX 14 14 SER B 280 SER B 294 1 15 SHEET 1 AA 7 GLU A 43 GLU A 49 0 SHEET 2 AA 7 VAL A 52 ILE A 61 -1 O VAL A 52 N ILE A 48 SHEET 3 AA 7 GLY A 65 ASP A 76 -1 O GLY A 65 N ILE A 61 SHEET 4 AA 7 GLN A 79 ILE A 83 -1 O GLN A 79 N ASP A 76 SHEET 5 AA 7 GLN A 107 ILE A 113 1 O GLN A 107 N ALA A 80 SHEET 6 AA 7 THR A 136 SER A 139 1 N TYR A 137 O SER A 112 SHEET 7 AA 7 HIS A 170 PHE A 172 1 O HIS A 170 N THR A 138 SHEET 1 AB 5 GLU A 179 LEU A 182 0 SHEET 2 AB 5 ILE A 187 TYR A 190 -1 O ILE A 187 N LEU A 182 SHEET 3 AB 5 VAL A 202 LEU A 205 -1 O VAL A 202 N TYR A 190 SHEET 4 AB 5 ILE A 216 GLY A 220 -1 O ILE A 216 N LEU A 205 SHEET 5 AB 5 MET A 258 PRO A 261 1 O MET A 258 N LEU A 217 SHEET 1 BA 7 GLU B 43 GLU B 49 0 SHEET 2 BA 7 VAL B 52 ILE B 61 -1 O VAL B 52 N ILE B 48 SHEET 3 BA 7 GLY B 65 ASP B 76 -1 O GLY B 65 N ILE B 61 SHEET 4 BA 7 GLN B 79 ILE B 83 -1 O GLN B 79 N ASP B 76 SHEET 5 BA 7 GLN B 107 ILE B 113 1 O GLN B 107 N ALA B 80 SHEET 6 BA 7 THR B 136 SER B 139 1 N TYR B 137 O SER B 112 SHEET 7 BA 7 HIS B 170 PHE B 172 1 O HIS B 170 N THR B 138 SHEET 1 BB 5 GLU B 179 LEU B 182 0 SHEET 2 BB 5 ILE B 187 TYR B 190 -1 O ILE B 187 N LEU B 182 SHEET 3 BB 5 VAL B 202 LEU B 205 -1 O VAL B 202 N TYR B 190 SHEET 4 BB 5 ILE B 216 GLY B 220 -1 O ILE B 216 N LEU B 205 SHEET 5 BB 5 MET B 258 PRO B 261 1 O MET B 258 N LEU B 217 LINK C GLY A 220 N OCS A 221 1555 1555 1.35 LINK C OCS A 221 N LEU A 222 1555 1555 1.33 LINK C GLY B 220 N OCS B 221 1555 1555 1.32 LINK C OCS B 221 N LEU B 222 1555 1555 1.33 LINK OE2 GLU A 62 ZN ZN B1296 1555 1555 2.02 LINK NE2 HIS A 116 ZN ZN A1297 1555 1555 2.12 LINK ND1 HIS A 118 ZN ZN A1297 1555 1555 2.09 LINK ZN ZN A1297 OE2 GLU B 62 1555 1555 1.95 LINK NE2 HIS B 116 ZN ZN B1296 1555 1555 2.17 LINK ND1 HIS B 118 ZN ZN B1296 1555 1555 2.10 LINK NE2 HIS B 196 ZN ZN B1296 1555 1555 1.97 SITE 1 AC1 4 HIS A 116 HIS A 118 HIS A 196 GLU B 62 SITE 1 AC2 4 GLU A 62 HIS B 116 HIS B 118 HIS B 196 CRYST1 38.644 133.007 40.860 90.00 95.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025877 0.000000 0.002391 0.00000 SCALE2 0.000000 0.007518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024578 0.00000