HEADER HYDROLASE 18-AUG-15 5ACV TITLE VIM-2-OX, DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE METALLO- TITLE 2 BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: 301-5473; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.CHRISTOPEIT,T.J.O.CARLSEN,R.HELLAND,H.K.S.LEIROS REVDAT 4 10-JAN-24 5ACV 1 REMARK LINK REVDAT 3 23-OCT-19 5ACV 1 LINK ATOM REVDAT 2 25-NOV-15 5ACV 1 JRNL REVDAT 1 04-NOV-15 5ACV 0 JRNL AUTH T.CHRISTOPEIT,T.J.O.CARLSEN,R.HELLAND,H.K.S.LEIROS JRNL TITL DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE JRNL TITL 2 METALLO-BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING JRNL REF J.MED.CHEM. V. 58 8671 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26477515 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01289 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 26390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6341 - 4.2227 0.99 2802 116 0.1445 0.1676 REMARK 3 2 4.2227 - 3.3541 0.81 2213 129 0.1327 0.1974 REMARK 3 3 3.3541 - 2.9308 0.98 2691 164 0.1517 0.1964 REMARK 3 4 2.9308 - 2.6631 0.96 2592 154 0.1655 0.2075 REMARK 3 5 2.6631 - 2.4724 0.96 2607 149 0.1678 0.2126 REMARK 3 6 2.4724 - 2.3267 0.98 2704 154 0.1677 0.2316 REMARK 3 7 2.3267 - 2.2103 0.83 2239 117 0.1919 0.2315 REMARK 3 8 2.2103 - 2.1141 0.97 2699 127 0.1853 0.2472 REMARK 3 9 2.1141 - 2.0328 0.77 2083 103 0.2189 0.2613 REMARK 3 10 2.0328 - 1.9626 0.88 2415 132 0.2004 0.2567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3739 REMARK 3 ANGLE : 0.759 5139 REMARK 3 CHIRALITY : 0.030 579 REMARK 3 PLANARITY : 0.003 686 REMARK 3 DIHEDRAL : 13.206 1331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0295 2.2381 67.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.3836 T22: 0.3885 REMARK 3 T33: 0.2581 T12: 0.0561 REMARK 3 T13: -0.0893 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 4.7646 L22: 6.0242 REMARK 3 L33: 5.7209 L12: -0.6926 REMARK 3 L13: -1.3418 L23: 1.7341 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: -0.9341 S13: -0.7484 REMARK 3 S21: 1.1108 S22: 0.4069 S23: -0.0819 REMARK 3 S31: 0.7601 S32: 0.4200 S33: -0.3054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5415 7.9050 62.3005 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.2543 REMARK 3 T33: 0.1308 T12: 0.0053 REMARK 3 T13: -0.0522 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.4493 L22: 3.2334 REMARK 3 L33: 2.7722 L12: 0.4146 REMARK 3 L13: 1.6751 L23: -0.2645 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.5882 S13: -0.1007 REMARK 3 S21: 0.2539 S22: -0.1263 S23: -0.1082 REMARK 3 S31: 0.3425 S32: 0.0037 S33: 0.1253 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9969 9.2578 59.3147 REMARK 3 T TENSOR REMARK 3 T11: 0.1107 T22: 0.0851 REMARK 3 T33: 0.0928 T12: -0.0020 REMARK 3 T13: -0.0102 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 3.2845 L22: 3.1876 REMARK 3 L33: 3.6464 L12: -0.3418 REMARK 3 L13: 0.3783 L23: 0.1028 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: 0.0242 S13: -0.1782 REMARK 3 S21: 0.0918 S22: -0.1403 S23: 0.0136 REMARK 3 S31: 0.1492 S32: 0.0047 S33: 0.0143 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3450 16.9293 62.9934 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.2377 REMARK 3 T33: 0.1229 T12: -0.0791 REMARK 3 T13: -0.0230 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.6983 L22: 3.0817 REMARK 3 L33: 3.0765 L12: -1.5476 REMARK 3 L13: 0.5035 L23: 0.6247 REMARK 3 S TENSOR REMARK 3 S11: 0.1402 S12: -0.3442 S13: -0.0129 REMARK 3 S21: 0.4882 S22: -0.0642 S23: -0.0193 REMARK 3 S31: -0.0030 S32: 0.2578 S33: -0.0705 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2205 17.9151 49.9985 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.0901 REMARK 3 T33: 0.0920 T12: -0.0268 REMARK 3 T13: 0.0048 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.1609 L22: 2.0409 REMARK 3 L33: 1.6288 L12: -0.3293 REMARK 3 L13: 0.2298 L23: 0.4151 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: -0.0176 S13: 0.0141 REMARK 3 S21: -0.0793 S22: -0.0393 S23: -0.0161 REMARK 3 S31: -0.0958 S32: 0.0189 S33: -0.0354 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0517 2.2339 47.8050 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.0456 REMARK 3 T33: 0.1353 T12: 0.0162 REMARK 3 T13: -0.0082 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.8555 L22: 1.3808 REMARK 3 L33: 2.1416 L12: 0.7800 REMARK 3 L13: 0.3986 L23: -0.7388 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.0341 S13: -0.0886 REMARK 3 S21: -0.1061 S22: -0.0531 S23: 0.0073 REMARK 3 S31: 0.1220 S32: -0.0159 S33: 0.0333 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4645 -4.1305 47.2751 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.0781 REMARK 3 T33: 0.0940 T12: -0.0013 REMARK 3 T13: -0.0315 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 7.2661 L22: 5.7525 REMARK 3 L33: 4.7998 L12: -0.5957 REMARK 3 L13: 2.6145 L23: -0.0207 REMARK 3 S TENSOR REMARK 3 S11: 0.1033 S12: 0.1563 S13: -0.1462 REMARK 3 S21: -0.2845 S22: -0.0793 S23: 0.1004 REMARK 3 S31: 0.1359 S32: -0.1861 S33: -0.0157 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5364 -1.4489 79.4119 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.5317 REMARK 3 T33: 0.3245 T12: -0.0712 REMARK 3 T13: -0.1259 T23: -0.1124 REMARK 3 L TENSOR REMARK 3 L11: 6.8561 L22: 1.1328 REMARK 3 L33: 0.8391 L12: -1.1341 REMARK 3 L13: -0.9908 L23: -0.6458 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: -0.2611 S13: 0.3451 REMARK 3 S21: 0.1013 S22: 0.2733 S23: -0.3982 REMARK 3 S31: -0.1863 S32: 0.2238 S33: -0.0531 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3451 -7.1052 81.9106 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.1589 REMARK 3 T33: 0.2088 T12: -0.0045 REMARK 3 T13: -0.0443 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 3.4276 L22: 2.0319 REMARK 3 L33: 4.0720 L12: 0.6237 REMARK 3 L13: -1.5002 L23: 0.2723 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.1947 S13: 0.2851 REMARK 3 S21: 0.0040 S22: -0.1176 S23: 0.0115 REMARK 3 S31: -0.2759 S32: 0.4212 S33: 0.0974 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2330 -7.9809 76.7886 REMARK 3 T TENSOR REMARK 3 T11: 0.0904 T22: 0.1393 REMARK 3 T33: 0.1656 T12: 0.0034 REMARK 3 T13: -0.0387 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 4.3423 L22: 4.0122 REMARK 3 L33: 5.4739 L12: 1.0342 REMARK 3 L13: -2.3435 L23: -1.6914 REMARK 3 S TENSOR REMARK 3 S11: -0.2794 S12: 0.2742 S13: 0.1114 REMARK 3 S21: -0.2901 S22: 0.0396 S23: -0.2546 REMARK 3 S31: 0.1851 S32: 0.1455 S33: 0.2183 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8151 -15.9899 82.5164 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.1123 REMARK 3 T33: 0.1544 T12: 0.0230 REMARK 3 T13: -0.0048 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 5.7151 L22: 4.4608 REMARK 3 L33: 3.4703 L12: 0.0432 REMARK 3 L13: 0.2937 L23: 0.3778 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.0903 S13: 0.3377 REMARK 3 S21: 0.1372 S22: 0.0790 S23: -0.2828 REMARK 3 S31: -0.0222 S32: 0.3735 S33: -0.0843 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9740 -21.0159 74.8276 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.0987 REMARK 3 T33: 0.1315 T12: -0.0011 REMARK 3 T13: 0.0089 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.4038 L22: 2.2898 REMARK 3 L33: 3.8487 L12: -1.0553 REMARK 3 L13: 1.1601 L23: -0.6921 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.2203 S13: -0.1272 REMARK 3 S21: -0.1087 S22: -0.1001 S23: 0.0580 REMARK 3 S31: 0.2022 S32: 0.1578 S33: 0.0437 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 150 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.1648 -14.6994 77.6005 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.0921 REMARK 3 T33: 0.1317 T12: -0.0079 REMARK 3 T13: 0.0234 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.8370 L22: 1.8437 REMARK 3 L33: 2.3202 L12: -0.5548 REMARK 3 L13: 0.8097 L23: -0.2493 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: -0.0995 S13: -0.1043 REMARK 3 S21: -0.0029 S22: 0.0082 S23: 0.1693 REMARK 3 S31: 0.0754 S32: -0.1749 S33: 0.0218 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.8117 -1.2828 66.8692 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.1504 REMARK 3 T33: 0.2251 T12: 0.0421 REMARK 3 T13: -0.0097 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.4955 L22: 8.1391 REMARK 3 L33: 7.0473 L12: 4.8280 REMARK 3 L13: 4.3775 L23: 6.0107 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: 0.3904 S13: 0.0466 REMARK 3 S21: -0.7230 S22: 0.1663 S23: -0.1775 REMARK 3 S31: -0.3030 S32: 0.3660 S33: -0.0837 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.1743 -2.7403 77.1703 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.0541 REMARK 3 T33: 0.1698 T12: 0.0254 REMARK 3 T13: -0.0075 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 3.0755 L22: 2.3655 REMARK 3 L33: 4.2740 L12: -0.0300 REMARK 3 L13: -0.6272 L23: 0.2447 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.1336 S13: 0.1802 REMARK 3 S21: 0.0815 S22: -0.0882 S23: 0.2947 REMARK 3 S31: -0.0760 S32: -0.2112 S33: 0.0599 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 280 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.8578 4.1226 68.6196 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1176 REMARK 3 T33: 0.1915 T12: 0.0323 REMARK 3 T13: -0.0394 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 3.7916 L22: 3.1244 REMARK 3 L33: 7.9268 L12: -0.1999 REMARK 3 L13: 2.0941 L23: 0.5633 REMARK 3 S TENSOR REMARK 3 S11: 0.0894 S12: 0.2368 S13: 0.1909 REMARK 3 S21: -0.2231 S22: -0.0955 S23: 0.2949 REMARK 3 S31: -0.3139 S32: -0.1713 S33: 0.0008 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1298) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9956 10.7965 54.7818 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.1340 REMARK 3 T33: 0.1811 T12: -0.0002 REMARK 3 T13: -0.0006 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11:-5704.602 S12: 417250.7 S13:-21082.2274 REMARK 3 S21:-668253.2 S22: 5704.602 S23:-1240.1310 REMARK 3 S31: 0.0000 S32: 0.000 S33: 0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1299) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9135 31.2587 52.0476 REMARK 3 T TENSOR REMARK 3 T11: 0.1161 T22: 0.1929 REMARK 3 T33: 0.2675 T12: -0.0312 REMARK 3 T13: -0.0017 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11:3596.3800 S12:23691.463 S13:-657622.6830 REMARK 3 S21:1793.2295 S22:11843.251 S23:-328810.1013 REMARK 3 S31:258362.50 S32:213973.96 S33:-15439.6313 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1298) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8632 -10.6173 67.0070 REMARK 3 T TENSOR REMARK 3 T11: 0.1702 T22: 0.1771 REMARK 3 T33: 0.2584 T12: -0.0324 REMARK 3 T13: -0.0385 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.0000 REMARK 3 L13: 0.0000 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 9.9210 S13: 0.0372 REMARK 3 S21: -9.9210 S22: -0.0000 S23: -5.1093 REMARK 3 S31: -0.0372 S32: 5.1093 S33: 0.0000 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1299) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8835 -30.8902 81.8403 REMARK 3 T TENSOR REMARK 3 T11: 0.3498 T22: 0.1006 REMARK 3 T33: 0.2696 T12: 0.0008 REMARK 3 T13: -0.0880 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: -0.0000 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11: 329.9236 S12:23377.660 S13:-1138.4263 REMARK 3 S21:16839.347 S22: 267.5680 S23:-5298.9767 REMARK 3 S31:2095.2815 S32: 9.1941 S33:-597.4916 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1300) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4531 30.6571 54.2048 REMARK 3 T TENSOR REMARK 3 T11: 0.2799 T22: 0.2601 REMARK 3 T33: 0.1235 T12: -0.0867 REMARK 3 T13: 0.1143 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11:61957.857 S12:-57459.82 S13:4645.6340 REMARK 3 S21:88502.254 S22:-61957.85 S23:91187.1665 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1301) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9641 30.6315 51.5836 REMARK 3 T TENSOR REMARK 3 T11: 0.3925 T22: 0.2797 REMARK 3 T33: 0.8639 T12: -0.0615 REMARK 3 T13: -0.1142 T23: 0.1958 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11:135130.54 S12:-245148.0 S13:-2198008.5352 REMARK 3 S21: 0.0000 S22: -0.0000 S23: 0.0000 REMARK 3 S31:923902.43 S32:-65853.87 S33:-135130.5446 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1300) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8311 -30.3905 81.0796 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.1067 REMARK 3 T33: 0.3602 T12: -0.0878 REMARK 3 T13: 0.1087 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: -0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 89142.68 S12:47238.950 S13:752959.2345 REMARK 3 S21: 0.000 S22: 0.0000 S23: 0.0000 REMARK 3 S31:-541943.0 S32:75384.252 S33:-89142.6801 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1301) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8581 -30.0833 83.8635 REMARK 3 T TENSOR REMARK 3 T11: 0.6003 T22: 0.2272 REMARK 3 T33: 0.4105 T12: -0.1022 REMARK 3 T13: -0.2942 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ACV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 25.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KO3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-27% PEG 3350, 0.2 M MAGNESIUM REMARK 280 FORMATE, 5 MM BETA-MERCAPTOETHANOL, PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.35450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.74200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.35450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.74200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2021 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 PHE A 0 REMARK 465 LYS A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 TYR A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 MET A 15 REMARK 465 ALA A 16 REMARK 465 ILE A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 SER A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 MET B -1 REMARK 465 PHE B 0 REMARK 465 LYS B 1 REMARK 465 LEU B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 VAL B 8 REMARK 465 TYR B 9 REMARK 465 LEU B 10 REMARK 465 THR B 11 REMARK 465 ALA B 12 REMARK 465 SER B 13 REMARK 465 ILE B 14 REMARK 465 MET B 15 REMARK 465 ALA B 16 REMARK 465 ILE B 17 REMARK 465 ALA B 18 REMARK 465 SER B 19 REMARK 465 PRO B 20 REMARK 465 LEU B 21 REMARK 465 ALA B 22 REMARK 465 PHE B 23 REMARK 465 SER B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 VAL B 298 REMARK 465 VAL B 299 REMARK 465 GLU B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 34 CG1 REMARK 470 ASP B 50 OD2 REMARK 470 LYS B 90 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLY A 29 O HOH B 2105 2658 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 30 -27.23 -160.65 REMARK 500 GLU A 30 -12.83 -156.28 REMARK 500 ASP A 84 147.56 69.78 REMARK 500 THR A 85 -167.50 -77.52 REMARK 500 TRP A 87 95.33 52.08 REMARK 500 ALA A 195 -105.05 -150.41 REMARK 500 ARG A 296 89.70 70.23 REMARK 500 ASP B 84 149.65 69.67 REMARK 500 THR B 85 -167.56 -78.45 REMARK 500 TRP B 87 93.58 58.60 REMARK 500 ALA B 195 -104.76 -156.23 REMARK 500 ARG B 296 77.41 48.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 29 GLU A 30 -145.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2041 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B2030 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B2119 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1298 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 96.7 REMARK 620 3 HIS A 196 NE2 103.1 116.2 REMARK 620 4 OH A1001 O 88.3 127.7 113.1 REMARK 620 5 HOH A2138 O 174.7 78.2 80.6 93.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1299 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS A 285 ND1 105.1 REMARK 620 3 CL A1300 CL 105.3 121.0 REMARK 620 4 CL A1301 CL 109.8 105.1 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1298 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 98.4 REMARK 620 3 HIS B 196 NE2 101.2 119.8 REMARK 620 4 OH B1001 O 109.3 123.7 102.0 REMARK 620 5 HOH B2129 O 171.2 81.4 86.4 64.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1299 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 170 NE2 REMARK 620 2 CL B1300 CL 103.7 REMARK 620 3 CL B1301 CL 111.2 102.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ACU RELATED DB: PDB REMARK 900 VIM-2-NAT, DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE REMARK 900 METALLO-BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING REMARK 900 RELATED ID: 5ACW RELATED DB: PDB REMARK 900 VIM-2-1, DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE METALLO- REMARK 900 BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING REMARK 900 RELATED ID: 5ACX RELATED DB: PDB REMARK 900 VIM-2-2, DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE METALLO- REMARK 900 BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING DBREF 5ACV A -1 300 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 DBREF 5ACV B -1 300 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 SEQRES 1 A 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 266 GLY GLY OCS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 266 ASN ARG SER VAL VAL GLU SEQRES 1 B 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 B 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 B 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 B 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 B 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 B 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 B 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 B 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 B 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 B 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 B 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 B 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 B 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 B 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 B 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 B 266 GLY GLY OCS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 B 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 B 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 B 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 B 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 B 266 ASN ARG SER VAL VAL GLU MODRES 5ACV OCS A 221 CYS CYSTEINESULFONIC ACID MODRES 5ACV OCS B 221 CYS CYSTEINESULFONIC ACID HET OCS A 221 12 HET OCS B 221 12 HET OH A1001 2 HET ZN A1298 1 HET ZN A1299 1 HET CL A1300 1 HET CL A1301 1 HET OH B1001 2 HET ZN B1298 1 HET ZN B1299 1 HET CL B1300 1 HET CL B1301 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM OH HYDROXIDE ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 OH 2(H O 1-) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 CL 4(CL 1-) FORMUL 13 HOH *599(H2 O) HELIX 1 1 THR A 33 ILE A 37 5 5 HELIX 2 2 GLY A 88 ILE A 104 1 16 HELIX 3 3 HIS A 118 GLY A 123 1 6 HELIX 4 4 GLY A 124 ALA A 131 1 8 HELIX 5 5 SER A 139 GLY A 150 1 12 HELIX 6 6 OCS A 221 ILE A 223 5 3 HELIX 7 7 GLU A 241 TYR A 253 1 13 HELIX 8 8 LEU A 280 ASN A 295 1 16 HELIX 9 9 GLY B 88 ILE B 104 1 16 HELIX 10 10 HIS B 118 GLY B 123 1 6 HELIX 11 11 GLY B 124 ALA B 131 1 8 HELIX 12 12 SER B 139 GLY B 150 1 12 HELIX 13 13 OCS B 221 ILE B 223 5 3 HELIX 14 14 GLU B 241 TYR B 253 1 13 HELIX 15 15 LEU B 280 ARG B 296 1 17 SHEET 1 AA 7 VAL A 42 ALA A 49 0 SHEET 2 AA 7 VAL A 52 PHE A 61 -1 O VAL A 52 N ILE A 48 SHEET 3 AA 7 ALA A 64 ASP A 76 -1 O ALA A 64 N PHE A 61 SHEET 4 AA 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA 7 VAL A 109 VAL A 113 1 N THR A 110 O LEU A 80 SHEET 6 AA 7 ALA A 135 ALA A 138 1 O ALA A 135 N ALA A 112 SHEET 7 AA 7 HIS A 170 SER A 171 1 O HIS A 170 N ALA A 138 SHEET 1 AB 5 ASP A 180 PHE A 184 0 SHEET 2 AB 5 VAL A 187 TYR A 191 -1 O VAL A 187 N PHE A 184 SHEET 3 AB 5 VAL A 202 VAL A 205 -1 O VAL A 202 N PHE A 190 SHEET 4 AB 5 VAL A 216 GLY A 220 -1 O VAL A 216 N VAL A 205 SHEET 5 AB 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 SHEET 1 BA 7 VAL B 42 ALA B 49 0 SHEET 2 BA 7 VAL B 52 PHE B 61 -1 O VAL B 52 N ILE B 48 SHEET 3 BA 7 ALA B 64 ASP B 76 -1 O ALA B 64 N PHE B 61 SHEET 4 BA 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 BA 7 VAL B 109 VAL B 113 1 N THR B 110 O LEU B 80 SHEET 6 BA 7 ALA B 135 ALA B 138 1 O ALA B 135 N ALA B 112 SHEET 7 BA 7 HIS B 170 SER B 171 1 O HIS B 170 N ALA B 138 SHEET 1 BB 5 ASP B 180 PHE B 184 0 SHEET 2 BB 5 VAL B 187 TYR B 191 -1 O VAL B 187 N PHE B 184 SHEET 3 BB 5 VAL B 202 VAL B 205 -1 O VAL B 202 N PHE B 190 SHEET 4 BB 5 VAL B 216 GLY B 220 -1 O VAL B 216 N VAL B 205 SHEET 5 BB 5 PHE B 258 PRO B 261 1 O PHE B 258 N LEU B 217 LINK C GLY A 220 N OCS A 221 1555 1555 1.33 LINK C OCS A 221 N ALA A 222 1555 1555 1.33 LINK C GLY B 220 N OCS B 221 1555 1555 1.33 LINK C OCS B 221 N ALA B 222 1555 1555 1.33 LINK NE2 HIS A 116 ZN ZN A1298 1555 1555 2.26 LINK ND1 HIS A 118 ZN ZN A1298 1555 1555 2.05 LINK NE2 HIS A 170 ZN ZN A1299 1555 1555 2.07 LINK NE2 HIS A 196 ZN ZN A1298 1555 1555 2.05 LINK ND1 HIS A 285 ZN ZN A1299 4557 1555 2.08 LINK O OH A1001 ZN ZN A1298 1555 1555 2.09 LINK ZN ZN A1298 O HOH A2138 1555 1555 2.69 LINK ZN ZN A1299 CL CL A1300 1555 1555 2.30 LINK ZN ZN A1299 CL CL A1301 1555 1555 2.10 LINK NE2 HIS B 116 ZN ZN B1298 1555 1555 2.29 LINK ND1 HIS B 118 ZN ZN B1298 1555 1555 1.95 LINK NE2 HIS B 170 ZN ZN B1299 1555 1555 2.04 LINK NE2 HIS B 196 ZN ZN B1298 1555 1555 2.12 LINK O OH B1001 ZN ZN B1298 1555 1555 2.00 LINK ZN ZN B1298 O HOH B2129 1555 1555 2.44 LINK ZN ZN B1299 CL CL B1300 1555 1555 2.25 LINK ZN ZN B1299 CL CL B1301 1555 1555 2.18 CISPEP 1 ARG B 296 SER B 297 0 0.84 SITE 1 AC1 5 HIS A 116 ASP A 120 HIS A 196 OCS A 221 SITE 2 AC1 5 ZN A1298 SITE 1 AC2 5 HIS A 116 HIS A 118 HIS A 196 OH A1001 SITE 2 AC2 5 HOH A2138 SITE 1 AC3 4 HIS A 170 HIS A 285 CL A1300 CL A1301 SITE 1 AC4 7 ALA A 135 HIS A 170 HIS A 285 ASN A 288 SITE 2 AC4 7 ZN A1299 CL A1301 HOH A2298 SITE 1 AC5 5 HIS A 170 HIS A 285 ZN A1299 CL A1300 SITE 2 AC5 5 HOH A2048 SITE 1 AC6 7 HIS B 116 HIS B 118 ASP B 120 HIS B 196 SITE 2 AC6 7 OCS B 221 ZN B1298 HOH B2129 SITE 1 AC7 5 HIS B 116 HIS B 118 HIS B 196 OH B1001 SITE 2 AC7 5 HOH B2129 SITE 1 AC8 3 HIS B 170 CL B1300 CL B1301 SITE 1 AC9 4 HIS B 170 ZN B1299 CL B1301 HOH B2173 SITE 1 BC1 6 ALA B 135 HIS B 170 ZN B1299 CL B1300 SITE 2 BC1 6 HOH B2048 HOH B2292 CRYST1 100.709 79.484 66.845 90.00 129.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009930 0.000000 0.008308 0.00000 SCALE2 0.000000 0.012581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019506 0.00000