HEADER HYDROLASE 18-AUG-15 5ACX TITLE VIM-2-2, DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE METALLO- TITLE 2 BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: 301-5473; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.CHRISTOPEIT,T.J.O.CARLSEN,R.HELLAND,H.K.S.LEIROS REVDAT 5 10-JAN-24 5ACX 1 REMARK LINK REVDAT 4 23-OCT-19 5ACX 1 ATOM REVDAT 3 27-JUN-18 5ACX 1 REMARK LINK REVDAT 2 25-NOV-15 5ACX 1 JRNL REVDAT 1 04-NOV-15 5ACX 0 JRNL AUTH T.CHRISTOPEIT,T.J.O.CARLSEN,R.HELLAND,H.K.S.LEIROS JRNL TITL DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE JRNL TITL 2 METALLO-BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING JRNL REF J.MED.CHEM. V. 58 8671 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26477515 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01289 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 37525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6196 - 4.2308 0.99 2847 117 0.1381 0.1620 REMARK 3 2 4.2308 - 3.3587 0.99 2793 116 0.1243 0.1896 REMARK 3 3 3.3587 - 2.9343 1.00 2763 154 0.1318 0.1699 REMARK 3 4 2.9343 - 2.6661 1.00 2760 144 0.1393 0.1988 REMARK 3 5 2.6661 - 2.4750 1.00 2713 179 0.1420 0.1879 REMARK 3 6 2.4750 - 2.3291 1.00 2732 164 0.1363 0.1951 REMARK 3 7 2.3291 - 2.2125 0.98 2693 137 0.1579 0.2203 REMARK 3 8 2.2125 - 2.1162 0.99 2751 140 0.1532 0.1991 REMARK 3 9 2.1162 - 2.0347 0.99 2717 154 0.1543 0.1741 REMARK 3 10 2.0347 - 1.9645 0.99 2778 115 0.1629 0.2556 REMARK 3 11 1.9645 - 1.9031 0.97 2697 120 0.2063 0.2605 REMARK 3 12 1.9031 - 1.8487 0.99 2739 125 0.1859 0.2180 REMARK 3 13 1.8487 - 1.8000 0.99 2737 140 0.1844 0.2204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3827 REMARK 3 ANGLE : 0.892 5261 REMARK 3 CHIRALITY : 0.032 587 REMARK 3 PLANARITY : 0.004 704 REMARK 3 DIHEDRAL : 13.539 1376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4538 6.6691 11.9499 REMARK 3 T TENSOR REMARK 3 T11: 0.3190 T22: 0.2419 REMARK 3 T33: 0.1645 T12: -0.0553 REMARK 3 T13: -0.0465 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 3.5588 L22: 3.7211 REMARK 3 L33: 2.8009 L12: -0.2416 REMARK 3 L13: -0.3313 L23: -0.1836 REMARK 3 S TENSOR REMARK 3 S11: 0.1551 S12: -0.5559 S13: -0.3215 REMARK 3 S21: 0.4448 S22: -0.0137 S23: 0.1031 REMARK 3 S31: 0.6313 S32: -0.1322 S33: 0.0622 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9223 19.3433 3.0824 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.0789 REMARK 3 T33: 0.1130 T12: -0.0235 REMARK 3 T13: 0.0168 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.0983 L22: 1.0940 REMARK 3 L33: 2.5937 L12: 0.2055 REMARK 3 L13: 1.1531 L23: 0.3492 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: -0.1321 S13: 0.0423 REMARK 3 S21: 0.0307 S22: -0.0265 S23: -0.0358 REMARK 3 S31: -0.0374 S32: -0.0411 S33: -0.0184 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1177 4.3309 -3.5726 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.0684 REMARK 3 T33: 0.1044 T12: 0.0046 REMARK 3 T13: -0.0072 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.5543 L22: 1.6399 REMARK 3 L33: 1.5000 L12: 0.0463 REMARK 3 L13: 0.7738 L23: -0.0605 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.0247 S13: -0.1184 REMARK 3 S21: -0.0413 S22: -0.0119 S23: -0.0365 REMARK 3 S31: 0.1617 S32: 0.0406 S33: -0.0647 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6131 -4.3557 -4.7377 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.0749 REMARK 3 T33: 0.1688 T12: -0.0135 REMARK 3 T13: -0.0276 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 7.8558 L22: 1.9568 REMARK 3 L33: 2.3922 L12: 0.3139 REMARK 3 L13: 1.1136 L23: -0.1260 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0112 S13: -0.2223 REMARK 3 S21: 0.0168 S22: 0.0213 S23: 0.0512 REMARK 3 S31: 0.3540 S32: -0.0733 S33: -0.0209 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4019 -3.3780 31.9169 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.2750 REMARK 3 T33: 0.3686 T12: -0.0413 REMARK 3 T13: -0.0587 T23: -0.0548 REMARK 3 L TENSOR REMARK 3 L11: 0.8833 L22: 3.7577 REMARK 3 L33: 1.9944 L12: 0.0535 REMARK 3 L13: 1.1629 L23: 0.9134 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.2887 S13: 0.6663 REMARK 3 S21: -0.0371 S22: -0.0327 S23: -0.1267 REMARK 3 S31: -0.4463 S32: 0.6279 S33: -0.0082 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3177 -7.0573 23.7680 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.3138 REMARK 3 T33: 0.2510 T12: -0.0219 REMARK 3 T13: -0.0276 T23: 0.0782 REMARK 3 L TENSOR REMARK 3 L11: 2.3296 L22: 4.3805 REMARK 3 L33: 7.6937 L12: 0.0556 REMARK 3 L13: -1.3809 L23: -0.7365 REMARK 3 S TENSOR REMARK 3 S11: -0.1077 S12: 0.4367 S13: 0.5606 REMARK 3 S21: -0.6466 S22: -0.1050 S23: -0.2475 REMARK 3 S31: -0.3563 S32: 0.4791 S33: 0.1734 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.7162 -13.0165 30.7259 REMARK 3 T TENSOR REMARK 3 T11: 0.0708 T22: 0.1527 REMARK 3 T33: 0.1459 T12: 0.0189 REMARK 3 T13: -0.0214 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.7943 L22: 3.9653 REMARK 3 L33: 3.3372 L12: 1.0372 REMARK 3 L13: -1.3802 L23: -0.0284 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: 0.0149 S13: 0.1254 REMARK 3 S21: 0.0442 S22: -0.0548 S23: -0.0848 REMARK 3 S31: 0.1513 S32: 0.5457 S33: 0.1234 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1117 -14.5670 32.4164 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.3124 REMARK 3 T33: 0.2855 T12: 0.0241 REMARK 3 T13: -0.0219 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.4241 L22: 3.3450 REMARK 3 L33: 5.8201 L12: -1.0058 REMARK 3 L13: -0.7140 L23: 1.8290 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.1052 S13: 0.4451 REMARK 3 S21: 0.1325 S22: 0.2441 S23: -0.4155 REMARK 3 S31: 0.0430 S32: 0.5533 S33: -0.1975 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.1675 -17.0666 26.1935 REMARK 3 T TENSOR REMARK 3 T11: 0.1161 T22: 0.1376 REMARK 3 T33: 0.1556 T12: 0.0305 REMARK 3 T13: 0.0133 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.8394 L22: 1.6910 REMARK 3 L33: 3.7151 L12: -1.0237 REMARK 3 L13: 2.2387 L23: 0.1237 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: 0.2125 S13: 0.1881 REMARK 3 S21: 0.0028 S22: -0.1365 S23: -0.0963 REMARK 3 S31: 0.0887 S32: 0.4049 S33: 0.0790 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.7184 -22.9461 21.7611 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.1286 REMARK 3 T33: 0.1351 T12: 0.0285 REMARK 3 T13: -0.0050 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.0181 L22: 1.8278 REMARK 3 L33: 2.5034 L12: -0.8191 REMARK 3 L13: 0.7289 L23: -0.0998 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.3630 S13: -0.2448 REMARK 3 S21: -0.1100 S22: -0.0543 S23: 0.0968 REMARK 3 S31: 0.3423 S32: 0.2215 S33: -0.0095 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.3241 -11.6456 28.5542 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.1150 REMARK 3 T33: 0.1397 T12: -0.0068 REMARK 3 T13: 0.0188 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.8448 L22: 1.3672 REMARK 3 L33: 4.1385 L12: -0.5112 REMARK 3 L13: 1.3485 L23: -0.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.0700 S13: 0.0218 REMARK 3 S21: 0.0581 S22: -0.0222 S23: 0.1113 REMARK 3 S31: 0.0369 S32: -0.0553 S33: -0.0076 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.7396 -0.7213 16.4366 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.2292 REMARK 3 T33: 0.2052 T12: -0.0087 REMARK 3 T13: 0.0001 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 0.7708 L22: 5.2215 REMARK 3 L33: 5.6674 L12: 1.1831 REMARK 3 L13: 1.9244 L23: 2.7133 REMARK 3 S TENSOR REMARK 3 S11: -0.1558 S12: 0.3114 S13: 0.1626 REMARK 3 S21: -0.3864 S22: 0.0611 S23: -0.2683 REMARK 3 S31: -0.5781 S32: 0.6709 S33: 0.0474 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.3396 -4.1933 21.8007 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.1109 REMARK 3 T33: 0.1789 T12: 0.0235 REMARK 3 T13: -0.0306 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 3.6074 L22: 3.0551 REMARK 3 L33: 6.1746 L12: -0.3065 REMARK 3 L13: -0.8477 L23: -1.0400 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: -0.1166 S13: 0.0626 REMARK 3 S21: 0.0543 S22: -0.0772 S23: 0.3646 REMARK 3 S31: -0.2204 S32: -0.6171 S33: 0.0097 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.5827 -1.8477 31.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.0922 REMARK 3 T33: 0.1261 T12: 0.0142 REMARK 3 T13: -0.0358 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 4.9597 L22: 3.0393 REMARK 3 L33: 4.6635 L12: -0.1571 REMARK 3 L13: -0.8227 L23: 0.4830 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.2231 S13: 0.3384 REMARK 3 S21: 0.2562 S22: -0.0255 S23: -0.0682 REMARK 3 S31: -0.3742 S32: 0.1639 S33: 0.0209 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 280 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.4997 3.9417 17.3732 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.0741 REMARK 3 T33: 0.1840 T12: 0.0231 REMARK 3 T13: -0.0115 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.5994 L22: 5.7582 REMARK 3 L33: 5.2423 L12: -1.0011 REMARK 3 L13: 1.6531 L23: -0.5082 REMARK 3 S TENSOR REMARK 3 S11: -0.2098 S12: 0.2095 S13: 0.2421 REMARK 3 S21: -0.1502 S22: -0.0809 S23: -0.0454 REMARK 3 S31: -0.3787 S32: -0.1768 S33: 0.1971 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6895 -10.0102 16.6372 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.2657 REMARK 3 T33: 0.3388 T12: 0.0707 REMARK 3 T13: 0.0200 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: -0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0000 S13: -0.0000 REMARK 3 S21:-87057.19 S22:-177834.7 S23:-1655026.5877 REMARK 3 S31:204621.61 S32:1329616.2 S33:177834.7884 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.8672 -7.7632 18.9425 REMARK 3 T TENSOR REMARK 3 T11: 0.4751 T22: 0.2857 REMARK 3 T33: 0.3244 T12: -0.0720 REMARK 3 T13: -0.0364 T23: 0.0501 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: -0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0000 S13:43468.5340 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31:-43468.54 S32: 0.0000 S33: -0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.1669 -31.0032 30.4424 REMARK 3 T TENSOR REMARK 3 T11: 0.3485 T22: 0.1386 REMARK 3 T33: 0.2779 T12: 0.0016 REMARK 3 T13: -0.1073 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: -0.0000 S23:-32170.1880 REMARK 3 S31: -0.0000 S32:32170.180 S33: 0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0259 10.2720 3.3519 REMARK 3 T TENSOR REMARK 3 T11: 0.3490 T22: 0.1970 REMARK 3 T33: 0.2088 T12: -0.0583 REMARK 3 T13: -0.0249 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12:1382.2774 S13: -0.0000 REMARK 3 S21:48719.010 S22:55805.896 S23:-1041866.6329 REMARK 3 S31:-127237.4 S32:972915.34 S33:-55805.8959 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5263 8.1604 5.0781 REMARK 3 T TENSOR REMARK 3 T11: 0.3488 T22: 0.2769 REMARK 3 T33: 0.4700 T12: -0.0662 REMARK 3 T13: -0.0562 T23: 0.0684 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: -0.0000 S13: -0.0000 REMARK 3 S21:-51961.48 S22:103302.91 S23:791154.8314 REMARK 3 S31:78996.346 S32: -358845 S33:-103302.9141 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3982 30.9219 0.8714 REMARK 3 T TENSOR REMARK 3 T11: 0.2018 T22: 0.1288 REMARK 3 T33: 0.2442 T12: -0.0197 REMARK 3 T13: -0.0272 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 320.6389 S13: -0.0000 REMARK 3 S21:-320.6389 S22: 0.0000 S23:-10260.4447 REMARK 3 S31: -0.0000 S32:10260.444 S33: -0.0000 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3167 30.5394 0.5364 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1607 REMARK 3 T33: 0.7470 T12: -0.1433 REMARK 3 T13: -0.2344 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.0000 REMARK 3 L13: 0.0000 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11:212975.77 S12:-32222.53 S13:-1602617.3831 REMARK 3 S21:-912.6373 S22:-391.0296 S23:-285.3245 REMARK 3 S31:644260.04 S32:-33803.04 S33:-212584.7438 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8732 30.3091 2.9513 REMARK 3 T TENSOR REMARK 3 T11: 0.4894 T22: -0.1182 REMARK 3 T33: 0.2928 T12: -0.0547 REMARK 3 T13: -0.0466 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: -0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11:-9595.016 S12:-877.7471 S13:2312.9432 REMARK 3 S21: 0.0000 S22: -0.0000 S23: 0.0000 REMARK 3 S31:-110934.1 S32:12288.321 S33:9595.0169 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9263 -30.5896 30.1234 REMARK 3 T TENSOR REMARK 3 T11: 0.5161 T22: 0.1751 REMARK 3 T33: 0.4771 T12: -0.0423 REMARK 3 T13: -0.1033 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.0000 REMARK 3 L13: 0.0000 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11:-80679.09 S12:-39536.45 S13:1062662.4064 REMARK 3 S21:-11469.90 S22:-2657.709 S23:-2569.7611 REMARK 3 S31: -1315943 S32:70563.455 S33:83336.8046 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6371 -30.5124 32.5486 REMARK 3 T TENSOR REMARK 3 T11: 0.7041 T22: -0.0212 REMARK 3 T33: 0.1601 T12: -0.0916 REMARK 3 T13: -0.1274 T23: -0.1576 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: -0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11:-22612.62 S12:-40001.97 S13:-41966.3580 REMARK 3 S21: 0.0000 S22: -0.0000 S23: 0.0000 REMARK 3 S31:-187829.0 S32:23268.602 S33:22612.6231 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.1258 -7.5097 15.5729 REMARK 3 T TENSOR REMARK 3 T11: 0.4179 T22: 0.4909 REMARK 3 T33: 0.4990 T12: 0.0775 REMARK 3 T13: -0.0294 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 4.1324 L22: 1.8393 REMARK 3 L33: 3.8002 L12: 1.0599 REMARK 3 L13: -0.7565 L23: 0.8364 REMARK 3 S TENSOR REMARK 3 S11: 0.1267 S12: -0.1228 S13: -0.0273 REMARK 3 S21: 0.0229 S22: 0.1101 S23: -0.5306 REMARK 3 S31: 0.4522 S32: 0.5468 S33: -0.1856 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7438 8.1250 7.0617 REMARK 3 T TENSOR REMARK 3 T11: 0.4224 T22: 0.8048 REMARK 3 T33: 0.5368 T12: 0.0524 REMARK 3 T13: -0.0845 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 1.0375 L22: 3.4561 REMARK 3 L33: 1.2930 L12: -0.9604 REMARK 3 L13: -0.1107 L23: 0.0494 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: -0.1449 S13: 0.1639 REMARK 3 S21: 0.2924 S22: 0.0171 S23: 0.0115 REMARK 3 S31: -0.0421 S32: 0.2908 S33: -0.0516 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ACX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KO3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-27% PEG 3350, 0.2 M MAGNESIUM REMARK 280 FORMATE, 5 MM BETA-MERCAPTOETHANOL, PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.61500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.61500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2008 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 PHE A 0 REMARK 465 LYS A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 TYR A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 MET A 15 REMARK 465 ALA A 16 REMARK 465 ILE A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 SER A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 MET B -1 REMARK 465 PHE B 0 REMARK 465 LYS B 1 REMARK 465 LEU B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 VAL B 8 REMARK 465 TYR B 9 REMARK 465 LEU B 10 REMARK 465 THR B 11 REMARK 465 ALA B 12 REMARK 465 SER B 13 REMARK 465 ILE B 14 REMARK 465 MET B 15 REMARK 465 ALA B 16 REMARK 465 ILE B 17 REMARK 465 ALA B 18 REMARK 465 SER B 19 REMARK 465 PRO B 20 REMARK 465 LEU B 21 REMARK 465 ALA B 22 REMARK 465 PHE B 23 REMARK 465 SER B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 VAL B 298 REMARK 465 VAL B 299 REMARK 465 GLU B 300 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 OCS A 221 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2014 O HOH B 2021 2.15 REMARK 500 O HOH B 2047 O HOH B 2111 2.17 REMARK 500 O HOH A 2217 O HOH A 2286 2.17 REMARK 500 O HOH A 2277 O HOH A 2286 2.19 REMARK 500 OD1 ASP A 281 O HOH A 2296 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 281 O HOH A 2157 4445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 30 -56.81 -121.87 REMARK 500 ASP A 84 146.24 71.49 REMARK 500 TRP A 87 66.77 67.31 REMARK 500 ALA A 195 -103.66 -152.38 REMARK 500 ASP B 84 149.18 71.85 REMARK 500 TRP B 87 66.64 70.14 REMARK 500 ALA B 195 -105.62 -153.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2031 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2038 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B2072 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B2079 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 94.6 REMARK 620 3 HIS A 196 NE2 99.8 111.4 REMARK 620 4 OH A1299 O 105.8 115.2 123.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 OCS A 221 SG 103.0 REMARK 620 3 OCS A 221 OD1 103.9 36.6 REMARK 620 4 OCS A 221 OD3 75.5 37.9 69.4 REMARK 620 5 HIS A 263 NE2 86.8 105.5 69.1 128.9 REMARK 620 6 WL3 A1298 O15 151.0 105.4 95.6 132.2 80.3 REMARK 620 7 OH A1299 O 70.7 114.9 150.6 81.3 137.0 101.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS A 285 ND1 47.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 94.5 REMARK 620 3 HIS B 196 NE2 101.3 107.0 REMARK 620 4 OH B1299 O 104.3 129.6 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 OCS B 221 SG 104.2 REMARK 620 3 OCS B 221 OD2 77.6 39.5 REMARK 620 4 OCS B 221 OD3 106.4 37.8 73.8 REMARK 620 5 HIS B 263 NE2 87.5 110.9 137.9 73.2 REMARK 620 6 WL3 B1298 O15 148.8 106.9 127.8 99.0 82.7 REMARK 620 7 OH B1299 O 74.7 107.7 72.8 145.4 140.5 94.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 170 NE2 REMARK 620 2 HIS B 285 ND1 36.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WL3 B 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WL3 A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH B 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ACU RELATED DB: PDB REMARK 900 VIM-2-NAT, DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE REMARK 900 METALLO-BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING REMARK 900 RELATED ID: 5ACV RELATED DB: PDB REMARK 900 VIM-2-NAT, DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE REMARK 900 METALLO-BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING REMARK 900 RELATED ID: 5ACW RELATED DB: PDB REMARK 900 VIM-2-1, DISCOVERY OF NOVEL INHIBITOR SCAFFOLDS AGAINST THE METALLO- REMARK 900 BETA-LACTAMASE VIM-2 BY SPR BASED FRAGMENT SCREENING DBREF 5ACX A -1 300 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 DBREF 5ACX B -1 300 UNP Q9K2N0 Q9K2N0_PSEAI 1 266 SEQRES 1 A 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 266 GLY GLY OCS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 266 ASN ARG SER VAL VAL GLU SEQRES 1 B 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 B 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 B 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 B 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 B 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 B 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 B 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 B 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 B 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 B 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 B 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 B 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 B 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 B 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 B 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 B 266 GLY GLY OCS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 B 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 B 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 B 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 B 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 B 266 ASN ARG SER VAL VAL GLU MODRES 5ACX OCS A 221 CYS CYSTEINESULFONIC ACID MODRES 5ACX OCS B 221 CYS CYSTEINESULFONIC ACID HET OCS A 221 12 HET OCS B 221 13 HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET WL3 A1298 26 HET OH A1299 2 HET CL A1300 1 HET CL A1301 1 HET ZN B1001 1 HET ZN B1002 1 HET ZN B1003 1 HET WL3 B1298 26 HET OH B1299 2 HET CL B1300 1 HET CL B1301 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION HETNAM WL3 2-(4-FLUOROPHENYL)CARBONYLBENZOIC ACID HETNAM OH HYDROXIDE ION HETNAM CL CHLORIDE ION FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 ZN 6(ZN 2+) FORMUL 6 WL3 2(C14 H9 F O3) FORMUL 7 OH 2(H O 1-) FORMUL 8 CL 4(CL 1-) FORMUL 17 HOH *616(H2 O) HELIX 1 1 THR A 33 ILE A 37 5 5 HELIX 2 2 GLY A 88 ILE A 104 1 16 HELIX 3 3 HIS A 118 GLY A 123 1 6 HELIX 4 4 GLY A 124 ALA A 131 1 8 HELIX 5 5 SER A 139 GLY A 150 1 12 HELIX 6 6 OCS A 221 ILE A 223 5 3 HELIX 7 7 GLU A 241 TYR A 253 1 13 HELIX 8 8 LEU A 280 ASN A 295 1 16 HELIX 9 9 THR B 33 ILE B 37 5 5 HELIX 10 10 GLY B 88 ILE B 104 1 16 HELIX 11 11 HIS B 118 GLY B 123 1 6 HELIX 12 12 GLY B 124 ALA B 131 1 8 HELIX 13 13 SER B 139 GLY B 150 1 12 HELIX 14 14 OCS B 221 ILE B 223 5 3 HELIX 15 15 GLU B 241 TYR B 253 1 13 HELIX 16 16 LEU B 280 ASN B 295 1 16 SHEET 1 AA 7 VAL A 42 ALA A 49 0 SHEET 2 AA 7 VAL A 52 PHE A 61 -1 O VAL A 52 N ILE A 48 SHEET 3 AA 7 ALA A 64 ASP A 76 -1 O ALA A 64 N PHE A 61 SHEET 4 AA 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA 7 VAL A 109 VAL A 113 1 N THR A 110 O LEU A 80 SHEET 6 AA 7 ALA A 135 ALA A 138 1 O ALA A 135 N ALA A 112 SHEET 7 AA 7 HIS A 170 SER A 171 1 O HIS A 170 N ALA A 138 SHEET 1 AB 5 ASP A 180 PHE A 184 0 SHEET 2 AB 5 VAL A 187 TYR A 191 -1 O VAL A 187 N PHE A 184 SHEET 3 AB 5 VAL A 202 VAL A 205 -1 O VAL A 202 N PHE A 190 SHEET 4 AB 5 VAL A 216 GLY A 220 -1 O VAL A 216 N VAL A 205 SHEET 5 AB 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 SHEET 1 BA 7 VAL B 42 ALA B 49 0 SHEET 2 BA 7 VAL B 52 SER B 60 -1 O VAL B 52 N ILE B 48 SHEET 3 BA 7 VAL B 66 ASP B 76 -1 O TYR B 67 N GLN B 59 SHEET 4 BA 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 BA 7 VAL B 109 VAL B 113 1 N THR B 110 O LEU B 80 SHEET 6 BA 7 ALA B 135 ALA B 138 1 O ALA B 135 N ALA B 112 SHEET 7 BA 7 HIS B 170 SER B 171 1 O HIS B 170 N ALA B 138 SHEET 1 BB 5 ALA B 181 PHE B 184 0 SHEET 2 BB 5 VAL B 187 PHE B 190 -1 O VAL B 187 N PHE B 184 SHEET 3 BB 5 VAL B 202 VAL B 205 -1 O VAL B 202 N PHE B 190 SHEET 4 BB 5 VAL B 216 GLY B 220 -1 O VAL B 216 N VAL B 205 SHEET 5 BB 5 PHE B 258 PRO B 261 1 O PHE B 258 N LEU B 217 LINK C GLY A 220 N OCS A 221 1555 1555 1.33 LINK C OCS A 221 N ALA A 222 1555 1555 1.33 LINK C GLY B 220 N OCS B 221 1555 1555 1.32 LINK C OCS B 221 N ALA B 222 1555 1555 1.33 LINK NE2 HIS A 116 ZN ZN A1001 1555 1555 2.20 LINK ND1 HIS A 118 ZN ZN A1001 1555 1555 1.89 LINK OD2 ASP A 120 ZN ZN A1002 1555 1555 2.56 LINK NE2 HIS A 170 ZN ZN A1003 1555 1555 1.97 LINK NE2 HIS A 196 ZN ZN A1001 1555 1555 2.06 LINK SG OCS A 221 ZN ZN A1002 1555 1555 2.29 LINK OD1 OCS A 221 ZN ZN A1002 1555 1555 2.16 LINK OD3 OCS A 221 ZN ZN A1002 1555 1555 1.84 LINK NE2 HIS A 263 ZN ZN A1002 1555 1555 2.30 LINK ND1 HIS A 285 ZN ZN A1003 1555 4445 2.02 LINK ZN ZN A1001 O OH A1299 1555 1555 1.96 LINK ZN ZN A1002 O15 WL3 A1298 1555 1555 2.14 LINK ZN ZN A1002 O OH A1299 1555 1555 2.39 LINK NE2 HIS B 116 ZN ZN B1001 1555 1555 2.17 LINK ND1 HIS B 118 ZN ZN B1001 1555 1555 1.95 LINK OD2 ASP B 120 ZN ZN B1002 1555 1555 2.54 LINK NE2 HIS B 170 ZN ZN B1003 1555 1555 2.16 LINK NE2 HIS B 196 ZN ZN B1001 1555 1555 2.01 LINK SG OCS B 221 ZN ZN B1002 1555 1555 2.22 LINK OD2 OCS B 221 ZN ZN B1002 1555 1555 1.71 LINK OD3 OCS B 221 ZN ZN B1002 1555 1555 2.09 LINK NE2 HIS B 263 ZN ZN B1002 1555 1555 2.33 LINK ND1 HIS B 285 ZN ZN B1003 1555 4456 2.08 LINK ZN ZN B1001 O OH B1299 1555 1555 1.99 LINK ZN ZN B1002 O15 WL3 B1298 1555 1555 2.18 LINK ZN ZN B1002 O OH B1299 1555 1555 2.02 SITE 1 AC1 7 HIS A 116 HIS A 118 HIS A 196 OCS A 221 SITE 2 AC1 7 ZN A1002 WL3 A1298 OH A1299 SITE 1 AC2 6 ASP A 120 OCS A 221 HIS A 263 ZN A1001 SITE 2 AC2 6 WL3 A1298 OH A1299 SITE 1 AC3 4 HIS A 170 HIS A 285 CL A1300 CL A1301 SITE 1 AC4 7 HIS B 116 HIS B 118 HIS B 196 OCS B 221 SITE 2 AC4 7 ZN B1002 WL3 B1298 OH B1299 SITE 1 AC5 6 ASP B 120 OCS B 221 HIS B 263 ZN B1001 SITE 2 AC5 6 WL3 B1298 OH B1299 SITE 1 AC6 4 HIS B 170 HIS B 285 CL B1300 CL B1301 SITE 1 AC7 14 TYR B 67 TRP B 87 ASP B 119 ASP B 120 SITE 2 AC7 14 HIS B 196 OCS B 221 ARG B 228 ASN B 233 SITE 3 AC7 14 HIS B 263 ZN B1001 ZN B1002 OH B1299 SITE 4 AC7 14 HOH B2218 HOH B2231 SITE 1 AC8 13 TYR A 67 HIS A 118 ASP A 119 ASP A 120 SITE 2 AC8 13 HIS A 196 OCS A 221 ASN A 233 HIS A 263 SITE 3 AC8 13 ZN A1001 ZN A1002 OH A1299 HOH A2232 SITE 4 AC8 13 HOH A2243 SITE 1 AC9 8 HIS B 116 HIS B 118 ASP B 120 HIS B 196 SITE 2 AC9 8 OCS B 221 ZN B1001 ZN B1002 WL3 B1298 SITE 1 BC1 8 HIS A 116 HIS A 118 ASP A 120 HIS A 196 SITE 2 BC1 8 OCS A 221 ZN A1001 ZN A1002 WL3 A1298 SITE 1 BC2 6 HIS A 170 HIS A 285 ZN A1003 CL A1301 SITE 2 BC2 6 HOH A2163 HOH A2257 SITE 1 BC3 7 ALA A 135 HIS A 170 HIS A 285 ASN A 288 SITE 2 BC3 7 ZN A1003 CL A1300 HOH A2306 SITE 1 BC4 6 HIS B 170 HIS B 285 ASN B 288 ZN B1003 SITE 2 BC4 6 CL B1301 HOH B2066 SITE 1 BC5 5 HIS B 170 HIS B 285 ZN B1003 CL B1300 SITE 2 BC5 5 HOH B2152 CRYST1 101.230 79.220 67.640 90.00 130.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009878 0.000000 0.008342 0.00000 SCALE2 0.000000 0.012623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019350 0.00000