HEADER IMMUNE SYSTEM 19-AUG-15 5AD0 TITLE COMPLEX OF A B21 CHICKEN MHC CLASS I MOLECULE AND A 11MER CHICKEN TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ALPHA CHAIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 1-291; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 22-119; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 11MER PEPTIDE; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 STRAIN: B21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 14 ORGANISM_COMMON: CHICKEN; SOURCE 15 ORGANISM_TAXID: 9031; SOURCE 16 STRAIN: B21; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_VARIANT: PLYSS ROSETTA; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 23 MOL_ID: 3; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 26 ORGANISM_COMMON: CHICKEN; SOURCE 27 ORGANISM_TAXID: 9031 KEYWDS IMMUNE SYSTEM, CHICKEN, B21 EXPDTA X-RAY DIFFRACTION AUTHOR P.E.CHAPPELL,P.ROVERSI,M.C.HARRISON,J.F.KAUFMAN,S.M.LEA REVDAT 2 10-JAN-24 5AD0 1 REMARK LINK REVDAT 1 28-SEP-16 5AD0 0 SPRSDE 28-SEP-16 5AD0 2YF1 JRNL AUTH P.E.CHAPPELL,P.ROVERSI,M.C.HARRISON,J.F.KAUFMAN,S.M.LEA JRNL TITL COMPLEX OF A B21 CHICKEN MHC CLASS I MOLECULE AND A 11MER JRNL TITL 2 CHICKEN PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 9355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 449 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.66 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2373 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2571 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2268 REMARK 3 BIN R VALUE (WORKING SET) : 0.2564 REMARK 3 BIN FREE R VALUE : 0.2712 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.42 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 105 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.32390 REMARK 3 B22 (A**2) : -1.18210 REMARK 3 B33 (A**2) : 4.50600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.445 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.869 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.802 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3116 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4213 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1043 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 81 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 455 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3116 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 382 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3132 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.83 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.44 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.09 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|2 - A|175} REMARK 3 ORIGIN FOR THE GROUP (A): -15.2441 26.5272 -2.4126 REMARK 3 T TENSOR REMARK 3 T11: -0.0920 T22: -0.1026 REMARK 3 T33: -0.0731 T12: 0.0549 REMARK 3 T13: -0.0275 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.5702 L22: 2.2488 REMARK 3 L33: 4.4220 L12: 0.1733 REMARK 3 L13: -0.8978 L23: -0.5675 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.1338 S13: 0.0123 REMARK 3 S21: 0.0324 S22: 0.1604 S23: 0.0590 REMARK 3 S31: -0.0099 S32: 0.0318 S33: -0.1224 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|176 - A|269} REMARK 3 ORIGIN FOR THE GROUP (A): 1.6985 -3.8792 7.3802 REMARK 3 T TENSOR REMARK 3 T11: -0.0420 T22: 0.0129 REMARK 3 T33: -0.0615 T12: -0.0291 REMARK 3 T13: -0.0182 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.0683 L22: 0.6363 REMARK 3 L33: 2.2308 L12: 0.8555 REMARK 3 L13: -0.1365 L23: -0.4903 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0210 S13: -0.0224 REMARK 3 S21: 0.0359 S22: 0.0128 S23: -0.0349 REMARK 3 S31: 0.0186 S32: -0.0150 S33: -0.0192 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {B|1 - B|98} REMARK 3 ORIGIN FOR THE GROUP (A): -13.6214 -0.5845 -6.1618 REMARK 3 T TENSOR REMARK 3 T11: 0.0169 T22: -0.0300 REMARK 3 T33: 0.0170 T12: -0.0085 REMARK 3 T13: 0.0203 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.1038 L22: 2.1544 REMARK 3 L33: 0.3483 L12: 0.2883 REMARK 3 L13: 1.5361 L23: -0.5004 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0049 S13: -0.0235 REMARK 3 S21: -0.0968 S22: 0.0007 S23: 0.0568 REMARK 3 S31: -0.0364 S32: -0.0370 S33: -0.0068 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {C|1 - C|11} REMARK 3 ORIGIN FOR THE GROUP (A): -18.6592 33.2394 -3.6658 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: 0.0096 REMARK 3 T33: 0.0125 T12: -0.0015 REMARK 3 T13: -0.0052 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.2423 L22: 0.0000 REMARK 3 L33: 0.0309 L12: 0.1118 REMARK 3 L13: 0.1306 L23: 0.2721 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0004 S13: -0.0045 REMARK 3 S21: -0.0023 S22: 0.0006 S23: -0.0059 REMARK 3 S31: -0.0001 S32: 0.0041 S33: -0.0004 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9390 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 73.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3BEV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M TRIS, PH 8.0, 20% PEG 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.93050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.76400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.16450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.76400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.93050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.16450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 CYS A -17 REMARK 465 GLY A -16 REMARK 465 ALA A -15 REMARK 465 LEU A -14 REMARK 465 GLY A -13 REMARK 465 LEU A -12 REMARK 465 GLY A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 LEU A -8 REMARK 465 ALA A -7 REMARK 465 ALA A -6 REMARK 465 VAL A -5 REMARK 465 CYS A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 ARG A 271 REMARK 465 SER A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 GLY A 275 REMARK 465 LEU A 276 REMARK 465 ASN A 277 REMARK 465 ASP A 278 REMARK 465 ILE A 279 REMARK 465 PHE A 280 REMARK 465 GLU A 281 REMARK 465 ALA A 282 REMARK 465 GLN A 283 REMARK 465 LYS A 284 REMARK 465 ILE A 285 REMARK 465 GLU A 286 REMARK 465 TRP A 287 REMARK 465 HIS A 288 REMARK 465 GLU A 289 REMARK 465 ASN A 290 REMARK 465 SER A 291 REMARK 465 SER A 292 REMARK 465 SER A 293 REMARK 465 VAL A 294 REMARK 465 ASP A 295 REMARK 465 LYS A 296 REMARK 465 LEU A 297 REMARK 465 ALA A 298 REMARK 465 ALA A 299 REMARK 465 ALA A 300 REMARK 465 LEU A 301 REMARK 465 GLU A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 106 -156.58 61.32 REMARK 500 GLU A 159 -59.54 -122.28 REMARK 500 ALA A 191 -134.44 -104.07 REMARK 500 LYS B 33 94.11 -66.84 REMARK 500 MET B 53 108.55 63.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1012 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 85 OD1 REMARK 620 2 ASP A 223 OD1 65.8 REMARK 620 3 GLU C 4 OE1 158.1 95.8 REMARK 620 4 GLU C 4 OE2 134.7 83.7 48.2 REMARK 620 5 HOH C2003 O 72.9 62.0 88.3 122.2 REMARK 620 6 HOH C2004 O 104.9 141.5 81.7 119.3 79.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1014 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ACZ RELATED DB: PDB REMARK 900 COMPLEX OF A B21 CHICKEN MHC CLASS I MOLECULE AND A 11MER CHICKEN REMARK 900 PEPTIDE DBREF 5AD0 A -20 270 UNP Q95601 Q95601_CHICK 1 291 DBREF 5AD0 B 1 98 UNP P21611 B2MG_CHICK 22 119 DBREF 5AD0 C 1 11 PDB 5AD0 5AD0 1 11 SEQADV 5AD0 ARG A 271 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 SER A 272 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 GLY A 273 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 GLY A 274 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 GLY A 275 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 LEU A 276 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ASN A 277 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ASP A 278 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ILE A 279 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 PHE A 280 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 GLU A 281 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ALA A 282 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 GLN A 283 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 LYS A 284 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ILE A 285 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 GLU A 286 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 TRP A 287 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 HIS A 288 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 GLU A 289 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ASN A 290 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 SER A 291 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 SER A 292 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 SER A 293 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 VAL A 294 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ASP A 295 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 LYS A 296 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 LEU A 297 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ALA A 298 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ALA A 299 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 ALA A 300 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 LEU A 301 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 GLU A 302 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 HIS A 303 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 HIS A 304 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 HIS A 305 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 HIS A 306 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 HIS A 307 UNP Q95601 EXPRESSION TAG SEQADV 5AD0 HIS A 308 UNP Q95601 EXPRESSION TAG SEQRES 1 A 329 MET GLY SER CYS GLY ALA LEU GLY LEU GLY LEU LEU LEU SEQRES 2 A 329 ALA ALA VAL CYS GLY ALA ALA ALA GLU LEU HIS THR LEU SEQRES 3 A 329 ARG TYR ILE ARG THR ALA MET THR ASP PRO GLY PRO GLY SEQRES 4 A 329 LEU PRO TRP PHE VAL ASP VAL GLY TYR VAL ASP GLY GLU SEQRES 5 A 329 LEU PHE MET HIS TYR ASN SER THR ALA ARG ARG ALA VAL SEQRES 6 A 329 PRO ARG THR GLU TRP ILE ALA ALA ASN THR ASP GLN GLN SEQRES 7 A 329 TYR TRP ASP ARG GLU THR GLN ILE VAL GLN GLY SER GLU SEQRES 8 A 329 GLN ILE ASN ARG GLU ASN LEU ASP ILE LEU ARG ARG ARG SEQRES 9 A 329 TYR ASN GLN THR GLY GLY SER HIS THR VAL GLN TRP MET SEQRES 10 A 329 SER GLY CYS ASP ILE LEU GLU ASP GLY THR ILE ARG GLY SEQRES 11 A 329 TYR HIS GLN ALA ALA TYR ASP GLY ARG ASP PHE VAL ALA SEQRES 12 A 329 PHE ASP LYS GLY THR MET THR LEU THR ALA ALA VAL PRO SEQRES 13 A 329 GLU ALA VAL PRO THR LYS ARG LYS TRP GLU GLU GLY GLY SEQRES 14 A 329 TYR ALA GLU GLY LEU LYS GLN TYR LEU GLU GLU THR CYS SEQRES 15 A 329 VAL GLU TRP LEU ARG ARG TYR VAL GLU TYR GLY LYS ALA SEQRES 16 A 329 GLU LEU GLY ARG ARG GLU ARG PRO GLU VAL ARG VAL TRP SEQRES 17 A 329 GLY LYS GLU ALA ASP GLY ILE LEU THR LEU SER CYS ARG SEQRES 18 A 329 ALA HIS GLY PHE TYR PRO ARG PRO ILE VAL VAL SER TRP SEQRES 19 A 329 LEU LYS ASP GLY ALA VAL ARG GLY GLN ASP ALA GLN SER SEQRES 20 A 329 GLY GLY ILE VAL PRO ASN GLY ASP GLY THR TYR HIS THR SEQRES 21 A 329 TRP VAL THR ILE ASP ALA GLN PRO GLY ASP GLY ASP LYS SEQRES 22 A 329 TYR GLN CYS ARG VAL GLU HIS ALA SER LEU PRO GLN PRO SEQRES 23 A 329 GLY LEU TYR SER TRP ARG SER GLY GLY GLY LEU ASN ASP SEQRES 24 A 329 ILE PHE GLU ALA GLN LYS ILE GLU TRP HIS GLU ASN SER SEQRES 25 A 329 SER SER VAL ASP LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 26 A 329 HIS HIS HIS HIS SEQRES 1 B 98 ASP LEU THR PRO LYS VAL GLN VAL TYR SER ARG PHE PRO SEQRES 2 B 98 ALA SER ALA GLY THR LYS ASN VAL LEU ASN CYS PHE ALA SEQRES 3 B 98 ALA GLY PHE HIS PRO PRO LYS ILE SER ILE THR LEU MET SEQRES 4 B 98 LYS ASP GLY VAL PRO MET GLU GLY ALA GLN TYR SER ASP SEQRES 5 B 98 MET SER PHE ASN ASP ASP TRP THR PHE GLN ARG LEU VAL SEQRES 6 B 98 HIS ALA ASP PHE THR PRO SER SER GLY SER THR TYR ALA SEQRES 7 B 98 CYS LYS VAL GLU HIS GLU THR LEU LYS GLU PRO GLN VAL SEQRES 8 B 98 TYR LYS TRP ASP PRO GLU PHE SEQRES 1 C 11 GLY HIS ALA GLU GLU TYR GLY ALA ASP THR LEU HET CA C1012 1 HET EDO C1013 4 HET EDO C1014 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 CA CA 2+ FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *32(H2 O) HELIX 1 1 THR A 47 THR A 54 1 8 HELIX 2 2 ASP A 55 TYR A 84 1 30 HELIX 3 3 VAL A 134 GLU A 136 5 3 HELIX 4 4 ALA A 137 GLY A 148 1 12 HELIX 5 5 TYR A 149 GLU A 159 1 11 HELIX 6 6 GLU A 159 GLY A 172 1 14 HELIX 7 7 GLY A 172 GLY A 177 1 6 HELIX 8 8 GLU C 5 THR C 10 5 6 SHEET 1 AA 8 VAL A 44 PRO A 45 0 SHEET 2 AA 8 GLU A 31 ASN A 37 -1 O HIS A 35 N VAL A 44 SHEET 3 AA 8 PHE A 22 VAL A 28 -1 O ASP A 24 N TYR A 36 SHEET 4 AA 8 HIS A 3 MET A 12 -1 O ARG A 6 N TYR A 27 SHEET 5 AA 8 THR A 92 ILE A 101 -1 O VAL A 93 N ALA A 11 SHEET 6 AA 8 ILE A 107 TYR A 115 -1 O ARG A 108 N ASP A 100 SHEET 7 AA 8 ARG A 118 ASP A 124 -1 O ARG A 118 N TYR A 115 SHEET 8 AA 8 THR A 129 ALA A 132 -1 O THR A 129 N ASP A 124 SHEET 1 AB 4 GLU A 183 GLU A 190 0 SHEET 2 AB 4 LEU A 195 PHE A 204 -1 O THR A 196 N LYS A 189 SHEET 3 AB 4 TYR A 237 ALA A 245 -1 O TYR A 237 N PHE A 204 SHEET 4 AB 4 ALA A 224 PRO A 231 -1 O GLN A 225 N THR A 242 SHEET 1 AC 4 ALA A 218 VAL A 219 0 SHEET 2 AC 4 VAL A 210 LYS A 215 -1 O LYS A 215 N ALA A 218 SHEET 3 AC 4 TYR A 253 GLU A 258 -1 O GLN A 254 N LEU A 214 SHEET 4 AC 4 GLY A 266 TYR A 268 -1 O GLY A 266 N VAL A 257 SHEET 1 BA 4 LYS B 5 SER B 10 0 SHEET 2 BA 4 ASN B 20 PHE B 29 -1 O ASN B 23 N TYR B 9 SHEET 3 BA 4 PHE B 61 PHE B 69 -1 O PHE B 61 N PHE B 29 SHEET 4 BA 4 SER B 54 PHE B 55 1 O SER B 54 N GLN B 62 SHEET 1 BB 4 LYS B 5 SER B 10 0 SHEET 2 BB 4 ASN B 20 PHE B 29 -1 O ASN B 23 N TYR B 9 SHEET 3 BB 4 PHE B 61 PHE B 69 -1 O PHE B 61 N PHE B 29 SHEET 4 BB 4 ALA B 48 TYR B 50 -1 O GLN B 49 N HIS B 66 SHEET 1 BC 2 SER B 54 PHE B 55 0 SHEET 2 BC 2 PHE B 61 PHE B 69 1 O GLN B 62 N SER B 54 SHEET 1 BD 4 VAL B 43 PRO B 44 0 SHEET 2 BD 4 SER B 35 LYS B 40 -1 O LYS B 40 N VAL B 43 SHEET 3 BD 4 TYR B 77 GLU B 82 -1 O ALA B 78 N MET B 39 SHEET 4 BD 4 GLN B 90 LYS B 93 -1 O GLN B 90 N VAL B 81 SSBOND 1 CYS A 99 CYS A 161 1555 1555 2.04 SSBOND 2 CYS A 199 CYS A 255 1555 1555 2.03 SSBOND 3 CYS B 24 CYS B 79 1555 1555 2.04 LINK OD1 ASN A 85 CA CA C1012 2465 1555 2.31 LINK OD1 ASP A 223 CA CA C1012 4455 1555 3.08 LINK OE1 GLU C 4 CA CA C1012 1555 1555 2.53 LINK OE2 GLU C 4 CA CA C1012 1555 1555 2.83 LINK CA CA C1012 O HOH C2003 1555 1555 2.30 LINK CA CA C1012 O HOH C2004 1555 1555 3.09 CISPEP 1 PRO A 15 GLY A 16 0 2.49 CISPEP 2 ASP A 104 GLY A 105 0 -4.19 CISPEP 3 TYR A 205 PRO A 206 0 3.28 CISPEP 4 HIS B 30 PRO B 31 0 2.33 SITE 1 AC1 5 ASN A 85 ASP A 223 GLU C 4 HOH C2003 SITE 2 AC1 5 HOH C2004 SITE 1 AC2 5 ARG A 9 TYR A 156 HIS C 2 ALA C 3 SITE 2 AC2 5 HOH C2001 SITE 1 AC3 1 GLU A 136 CRYST1 73.861 72.329 73.528 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013539 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013600 0.00000