HEADER IMMUNE SYSTEM 21-AUG-15 5ADP TITLE CRYSTAL STRUCTURE OF THE A.17 ANTIBODY FAB FRAGMENT - LIGHT CHAIN S35R TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB A.17; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: HEAVY CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB A.17; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: LIGHT CHAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 644223; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA JK1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 644223; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA JK1 KEYWDS IMMUNE SYSTEM, ENZYME REPROGRAMMING, ANTIBODIES, IG SUPERFAMILY, IN KEYWDS 2 SILICO ANTIBODY MATURATION EXPDTA X-RAY DIFFRACTION AUTHOR S.D.CHATZIEFTHIMIOU,I.V.SMIRNOV,A.V.GOLOVIN,A.V.STEPANOVA,Y.PENG, AUTHOR 2 O.I.ZOLOTAREVA,A.A.BELOGUROV,N.A.PONOMARENKO,G.M.BLACKBURN, AUTHOR 3 A.A.GABIBOV,R.LERNER,M.WILMANNS REVDAT 3 10-JAN-24 5ADP 1 REMARK REVDAT 2 17-JUL-19 5ADP 1 REMARK REVDAT 1 09-NOV-16 5ADP 0 JRNL AUTH I.V.SMIRNOV,A.V.GOLOVIN,S.D.CHATZIEFTHIMIOU,A.V.STEPANOVA, JRNL AUTH 2 Y.PENG,O.I.ZOLOTAREVA,A.A.BELOGUROV,I.N.KURKOVA, JRNL AUTH 3 N.A.PONOMARENKO,M.WILMANNS,G.M.BLACKBURN,A.G.GABIBOV, JRNL AUTH 4 R.A.LERNER JRNL TITL ROBOTIC QM/MM-DRIVEN MATURATION OF ANTIBODY COMBINING SITES. JRNL REF SCI.ADV. V. 2 01695 2016 JRNL REFN ESSN 2375-2548 JRNL PMID 27774510 JRNL DOI 10.1126/SCIADV.1501695 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 24208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.3601 - 5.4472 0.87 2369 113 0.1567 0.1527 REMARK 3 2 5.4472 - 4.3396 0.97 2581 183 0.1261 0.1633 REMARK 3 3 4.3396 - 3.7958 0.98 2624 141 0.1372 0.1576 REMARK 3 4 3.7958 - 3.4509 0.98 2666 133 0.1583 0.1994 REMARK 3 5 3.4509 - 3.2047 0.98 2677 134 0.1772 0.2522 REMARK 3 6 3.2047 - 3.0165 0.99 2637 161 0.2033 0.2671 REMARK 3 7 3.0165 - 2.8659 0.99 2665 147 0.2028 0.2828 REMARK 3 8 2.8659 - 2.7415 0.99 2693 134 0.2048 0.2440 REMARK 3 9 2.7415 - 2.6363 0.99 2662 138 0.1992 0.2644 REMARK 3 10 2.6363 - 2.5455 0.99 2721 139 0.2112 0.2650 REMARK 3 11 2.5455 - 2.4661 0.99 2661 153 0.2154 0.2356 REMARK 3 12 2.4661 - 2.3957 0.99 2681 121 0.2205 0.2746 REMARK 3 13 2.3957 - 2.3328 1.00 2725 159 0.2168 0.2869 REMARK 3 14 2.3328 - 2.2759 0.99 2686 135 0.2190 0.2471 REMARK 3 15 2.2759 - 2.2243 1.00 2668 130 0.2131 0.2725 REMARK 3 16 2.2243 - 2.1770 0.99 2698 147 0.2131 0.2541 REMARK 3 17 2.1770 - 2.1335 0.89 2395 146 0.2349 0.2752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 NULL REMARK 3 ANGLE : 0.800 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 2:98) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9320 -2.4241 34.5124 REMARK 3 T TENSOR REMARK 3 T11: 0.1866 T22: 0.2480 REMARK 3 T33: 0.1999 T12: 0.0011 REMARK 3 T13: 0.0173 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.9945 L22: 3.8567 REMARK 3 L33: 4.3143 L12: 0.2223 REMARK 3 L13: 0.3290 L23: 0.4516 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: -0.4198 S13: -0.3336 REMARK 3 S21: 0.2954 S22: -0.1981 S23: -0.0427 REMARK 3 S31: 0.3701 S32: 0.2062 S33: 0.0636 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 99:223) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0742 -7.4940 6.7172 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1150 REMARK 3 T33: 0.1843 T12: 0.0221 REMARK 3 T13: -0.0037 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.2506 L22: 1.3969 REMARK 3 L33: 2.6766 L12: -0.0720 REMARK 3 L13: 0.1269 L23: 1.1096 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.0298 S13: -0.1268 REMARK 3 S21: -0.0315 S22: -0.0897 S23: 0.0034 REMARK 3 S31: 0.1068 S32: -0.0496 S33: 0.0838 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN L AND RESID 2:92) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1583 4.3465 21.0084 REMARK 3 T TENSOR REMARK 3 T11: 0.1430 T22: 0.1706 REMARK 3 T33: 0.2095 T12: -0.0497 REMARK 3 T13: 0.0340 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.4020 L22: 2.0934 REMARK 3 L33: 5.7820 L12: -0.1646 REMARK 3 L13: -1.0152 L23: 0.4369 REMARK 3 S TENSOR REMARK 3 S11: 0.1117 S12: -0.3319 S13: 0.0709 REMARK 3 S21: 0.0759 S22: -0.0172 S23: -0.0454 REMARK 3 S31: -0.2250 S32: 0.2436 S33: -0.0857 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN L AND RESID 93:218) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3073 4.4916 -2.4888 REMARK 3 T TENSOR REMARK 3 T11: 0.1832 T22: 0.1191 REMARK 3 T33: 0.1977 T12: 0.0154 REMARK 3 T13: -0.0058 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.2890 L22: 0.2767 REMARK 3 L33: 2.1641 L12: 0.1567 REMARK 3 L13: 1.6265 L23: -0.0543 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: 0.1959 S13: 0.0851 REMARK 3 S21: -0.0558 S22: 0.0338 S23: 0.0356 REMARK 3 S31: -0.0777 S32: 0.0720 S33: 0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ADP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 10 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MAR 165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24223 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 19.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2XZA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M MGCL2 18% (W/V) POLYETHYLENE REMARK 280 GLYCOL 6000 0.1 M N-(2-ACETAMIDO) IMINODIACETIC ACID (ADA) PH REMARK 280 7.5, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.52000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 GLN H 101 REMARK 465 SER H 102 REMARK 465 SER H 103 REMARK 465 HIS H 104 REMARK 465 ASN H 105 REMARK 465 ASP H 106 REMARK 465 LYS H 135 REMARK 465 SER H 136 REMARK 465 THR H 137 REMARK 465 SER H 138 REMARK 465 GLY H 139 REMARK 465 ALA H 224 REMARK 465 MET H 225 REMARK 465 ASP H 226 REMARK 465 TYR H 227 REMARK 465 LYS H 228 REMARK 465 ASP H 229 REMARK 465 HIS H 230 REMARK 465 ASP H 231 REMARK 465 GLY H 232 REMARK 465 ASP H 233 REMARK 465 TYR H 234 REMARK 465 LYS H 235 REMARK 465 ASP H 236 REMARK 465 HIS H 237 REMARK 465 ASP H 238 REMARK 465 ILE H 239 REMARK 465 ASP H 240 REMARK 465 TYR H 241 REMARK 465 LYS H 242 REMARK 465 ASP H 243 REMARK 465 ASP H 244 REMARK 465 ASP H 245 REMARK 465 ASP H 246 REMARK 465 LYS H 247 REMARK 465 VAL H 248 REMARK 465 ASP H 249 REMARK 465 HIS H 250 REMARK 465 HIS H 251 REMARK 465 HIS H 252 REMARK 465 HIS H 253 REMARK 465 HIS H 254 REMARK 465 HIS H 255 REMARK 465 GLN L 1 REMARK 465 ALA L 219 REMARK 465 ALA L 220 REMARK 465 ALA L 221 REMARK 465 ALA L 222 REMARK 465 ALA L 223 REMARK 465 SER L 224 REMARK 465 PHE L 225 REMARK 465 LEU L 226 REMARK 465 GLU L 227 REMARK 465 GLN L 228 REMARK 465 LYS L 229 REMARK 465 LEU L 230 REMARK 465 ILE L 231 REMARK 465 SER L 232 REMARK 465 GLU L 233 REMARK 465 GLU L 234 REMARK 465 ASP L 235 REMARK 465 LEU L 236 REMARK 465 ASN L 237 REMARK 465 SER L 238 REMARK 465 ALA L 239 REMARK 465 VAL L 240 REMARK 465 ASP L 241 REMARK 465 HIS L 242 REMARK 465 HIS L 243 REMARK 465 HIS L 244 REMARK 465 HIS L 245 REMARK 465 HIS L 246 REMARK 465 HIS L 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -2.21 70.72 REMARK 500 ASN L 28 -86.88 -109.10 REMARK 500 ASN L 52 -47.33 72.63 REMARK 500 ASN L 53 12.07 -144.98 REMARK 500 ASP L 93 -168.11 -79.96 REMARK 500 ASN L 140 72.54 49.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ADO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PARAOXON-MODIFIED A.17 ANTIBODY FAB REMARK 900 FRAGMENT - LIGHT CHAIN S35R MUTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN L HAS MUTATION S35R DBREF 5ADP H 1 255 PDB 5ADP 5ADP 1 255 DBREF 5ADP L 1 247 PDB 5ADP 5ADP 1 247 SEQRES 1 H 255 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 255 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 255 TYR SER ILE SER SER GLY TYR TYR TRP GLY TRP ILE ARG SEQRES 4 H 255 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY SER ILE SEQRES 5 H 255 TYR HIS SER GLY SER THR TYR TYR ASN PRO SER LEU LYS SEQRES 6 H 255 SER ARG VAL THR ILE SER VAL ASP THR SER LYS ASN GLN SEQRES 7 H 255 PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 255 ALA VAL TYR TYR CYS ALA GLY LEU THR GLN SER SER HIS SEQRES 9 H 255 ASN ASP ALA ASN TRP GLY GLN GLY THR LEU THR THR VAL SEQRES 10 H 255 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 255 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 255 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 255 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 255 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 255 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 255 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 255 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 H 255 CYS LEU ALA MET ASP TYR LYS ASP HIS ASP GLY ASP TYR SEQRES 19 H 255 LYS ASP HIS ASP ILE ASP TYR LYS ASP ASP ASP ASP LYS SEQRES 20 H 255 VAL ASP HIS HIS HIS HIS HIS HIS SEQRES 1 L 247 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 247 PRO GLY GLN LYS VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 247 SER ASN ILE GLY ASN ASN TYR VAL ARG TRP TYR GLN GLN SEQRES 4 L 247 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR ASP ASN SEQRES 5 L 247 ASN LYS ARG PRO SER GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 247 SER LYS SER GLY THR SER ALA THR LEU GLY ILE THR GLY SEQRES 7 L 247 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS GLY THR SEQRES 8 L 247 TRP ASP SER SER LEU ASN PRO VAL PHE GLY GLY GLY THR SEQRES 9 L 247 LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 247 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 247 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 247 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 247 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 247 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 247 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 247 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 247 LYS SER PHE ASN ARG GLY GLU CYS ILE ASP ALA ALA ALA SEQRES 18 L 247 ALA ALA SER PHE LEU GLU GLN LYS LEU ILE SER GLU GLU SEQRES 19 L 247 ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *241(H2 O) HELIX 1 1 SER H 28 GLY H 32 5 5 HELIX 2 2 LEU H 64 SER H 66 5 3 HELIX 3 3 THR H 87 THR H 91 5 5 HELIX 4 4 SER H 162 ALA H 164 5 3 HELIX 5 5 SER H 193 LEU H 195 5 3 HELIX 6 6 LYS H 207 ASN H 210 5 4 HELIX 7 7 SER L 123 LYS L 128 1 6 HELIX 8 8 LYS L 185 GLU L 189 1 5 SHEET 1 HA 4 GLN H 3 SER H 7 0 SHEET 2 HA 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 HA 4 GLN H 78 LEU H 83 -1 O PHE H 79 N CYS H 22 SHEET 4 HA 4 VAL H 72 ASP H 73 1 O ASP H 73 N GLN H 78 SHEET 1 HB 4 GLN H 3 SER H 7 0 SHEET 2 HB 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 HB 4 GLN H 78 LEU H 83 -1 O PHE H 79 N CYS H 22 SHEET 4 HB 4 VAL H 68 THR H 69 -1 O THR H 69 N LYS H 82 SHEET 1 HC 2 VAL H 72 ASP H 73 0 SHEET 2 HC 2 GLN H 78 LEU H 83 1 O GLN H 78 N ASP H 73 SHEET 1 HD 4 LEU H 11 VAL H 12 0 SHEET 2 HD 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 HD 4 ALA H 92 LEU H 99 -1 O ALA H 92 N THR H 115 SHEET 4 HD 4 ASN H 108 TRP H 109 -1 O ASN H 108 N GLY H 98 SHEET 1 HE 6 LEU H 11 VAL H 12 0 SHEET 2 HE 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 HE 6 ALA H 92 LEU H 99 -1 O ALA H 92 N THR H 115 SHEET 4 HE 6 TYR H 34 GLN H 40 -1 O TYR H 34 N LEU H 99 SHEET 5 HE 6 GLU H 47 TYR H 53 -1 O GLU H 47 N ARG H 39 SHEET 6 HE 6 THR H 58 TYR H 60 -1 O TYR H 59 N SER H 51 SHEET 1 HF 2 ASN H 108 TRP H 109 0 SHEET 2 HF 2 ALA H 92 LEU H 99 -1 O GLY H 98 N ASN H 108 SHEET 1 HG 4 SER H 126 LEU H 130 0 SHEET 2 HG 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 HG 4 TYR H 182 PRO H 191 -1 O TYR H 182 N TYR H 151 SHEET 4 HG 4 VAL H 175 LEU H 176 1 O VAL H 175 N SER H 183 SHEET 1 HH 4 SER H 126 LEU H 130 0 SHEET 2 HH 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 HH 4 TYR H 182 PRO H 191 -1 O TYR H 182 N TYR H 151 SHEET 4 HH 4 VAL H 169 THR H 171 -1 O HIS H 170 N VAL H 187 SHEET 1 HI 2 VAL H 175 LEU H 176 0 SHEET 2 HI 2 TYR H 182 PRO H 191 1 O SER H 183 N VAL H 175 SHEET 1 HJ 3 THR H 157 TRP H 160 0 SHEET 2 HJ 3 ILE H 201 HIS H 206 -1 O ASN H 203 N SER H 159 SHEET 3 HJ 3 THR H 211 LYS H 216 -1 O THR H 211 N HIS H 206 SHEET 1 HK 2 SER H 221 CYS H 222 0 SHEET 2 HK 2 CYS L 216 ILE L 217 -1 O ILE L 217 N SER H 221 SHEET 1 LA 4 SER L 9 ALA L 12 0 SHEET 2 LA 4 THR L 104 ILE L 108 1 O LYS L 105 N VAL L 10 SHEET 3 LA 4 ASP L 86 TRP L 92 -1 O TYR L 87 N THR L 104 SHEET 4 LA 4 PRO L 98 PHE L 100 1 O VAL L 99 N THR L 91 SHEET 1 LB 5 SER L 9 ALA L 12 0 SHEET 2 LB 5 THR L 104 ILE L 108 1 O LYS L 105 N VAL L 10 SHEET 3 LB 5 ASP L 86 TRP L 92 -1 O TYR L 87 N THR L 104 SHEET 4 LB 5 ARG L 35 GLN L 39 -1 O ARG L 35 N GLY L 90 SHEET 5 LB 5 LYS L 46 ILE L 49 -1 O LYS L 46 N GLN L 38 SHEET 1 LC 2 PRO L 98 PHE L 100 0 SHEET 2 LC 2 ASP L 86 TRP L 92 1 O THR L 91 N VAL L 99 SHEET 1 LD 3 VAL L 18 SER L 23 0 SHEET 2 LD 3 SER L 71 ILE L 76 -1 O ALA L 72 N CYS L 22 SHEET 3 LD 3 PHE L 63 SER L 68 -1 O SER L 64 N GLY L 75 SHEET 1 LE 4 SER L 116 PHE L 120 0 SHEET 2 LE 4 THR L 131 PHE L 141 -1 O VAL L 135 N PHE L 120 SHEET 3 LE 4 TYR L 175 SER L 184 -1 O TYR L 175 N PHE L 141 SHEET 4 LE 4 SER L 161 VAL L 165 -1 O GLN L 162 N THR L 180 SHEET 1 LF 4 ALA L 155 LEU L 156 0 SHEET 2 LF 4 ALA L 146 VAL L 152 -1 O VAL L 152 N ALA L 155 SHEET 3 LF 4 VAL L 193 HIS L 200 -1 O ALA L 195 N LYS L 151 SHEET 4 LF 4 VAL L 207 ASN L 212 -1 O VAL L 207 N VAL L 198 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 2 CYS H 146 CYS H 202 1555 1555 2.04 SSBOND 3 CYS H 222 CYS L 216 1555 1555 2.03 SSBOND 4 CYS L 22 CYS L 89 1555 1555 2.03 SSBOND 5 CYS L 136 CYS L 196 1555 1555 2.03 CISPEP 1 PHE H 152 PRO H 153 0 -4.38 CISPEP 2 GLU H 154 PRO H 155 0 0.10 CISPEP 3 TYR L 142 PRO L 143 0 3.49 CRYST1 52.547 67.040 66.950 90.00 107.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019031 0.000000 0.006048 0.00000 SCALE2 0.000000 0.014916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015673 0.00000