HEADER TRANSFERASE 26-AUG-15 5AE9
TITLE CRYSTAL STRUCTURE OF MOUSE PI3 KINASE DELTA IN COMPLEX WITH GSK2292767
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC
COMPND 3 SUBUNIT DELTA ISOFORM;
COMPND 4 CHAIN: A;
COMPND 5 FRAGMENT: P110 SUBUNIT, UNP RESIDUES 106-1044;
COMPND 6 SYNONYM: PI3-KINASE SUBUNIT DELTA,PI3K-DELTA,PI3KDELTA,PTDINS-3-
COMPND 7 KINASE SUBUNIT DELTA,PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE
COMPND 8 110 KDA CATALYTIC SUBUNIT DELTA,PTDINS-3-KINASE SUBUNIT P110-DELTA,
COMPND 9 P110DELTA;
COMPND 10 EC: 2.7.1.137,2.7.1.153;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: PIK3CD;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS
KEYWDS TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.D.DOWN,A.AMOUR,I.R.BALDWIN,A.W.J.COOPER,A.M.DEAKIN,L.M.FELTON,
AUTHOR 2 S.B.GUNTRIP,C.HARDY,Z.A.HARRISON,K.L.JONES,P.JONES,S.E.KEELING,J.LE,
AUTHOR 3 S.LIVIA,F.LUCAS,C.J.LUNNISS,N.J.PARR,E.ROBINSON,P.ROWLAND,S.SMITH,
AUTHOR 4 D.A.THOMAS,G.VITULLI,Y.WASHIO,N.HAMBLIN
REVDAT 4 19-JUN-24 5AE9 1 REMARK
REVDAT 3 29-SEP-21 5AE9 1 COMPND SOURCE REMARK DBREF
REVDAT 3 2 1 SEQADV
REVDAT 2 07-OCT-15 5AE9 1 JRNL
REVDAT 1 16-SEP-15 5AE9 0
JRNL AUTH K.DOWN,A.AMOUR,I.R.BALDWIN,A.W.J.COOPER,A.M.DEAKIN,
JRNL AUTH 2 L.M.FELTON,S.B.GUNTRIP,C.HARDY,Z.A.HARRISON,K.L.JONES,
JRNL AUTH 3 P.JONES,S.E.KEELING,J.LE,S.LIVIA,F.LUCAS,C.J.LUNNISS,
JRNL AUTH 4 N.J.PARR,E.ROBINSON,P.ROWLAND,S.SMITH,D.A.THOMAS,G.VITULLI,
JRNL AUTH 5 Y.WASHIO,J.N.HAMBLIN
JRNL TITL OPTIMIZATION OF NOVEL INDAZOLES AS HIGHLY POTENT AND
JRNL TITL 2 SELECTIVE INHIBITORS OF PHOSPHOINOSITIDE 3-KINASE GAMMA FOR
JRNL TITL 3 THE TREATMENT OF RESPIRATORY DISEASE.
JRNL REF J.MED.CHEM. V. 58 7381 2015
JRNL REFN ISSN 0022-2623
JRNL PMID 26301626
JRNL DOI 10.1021/ACS.JMEDCHEM.5B00767
REMARK 2
REMARK 2 RESOLUTION. 2.44 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.5
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0
REMARK 3 NUMBER OF REFLECTIONS : 37804
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.190
REMARK 3 R VALUE (WORKING SET) : 0.186
REMARK 3 FREE R VALUE : 0.263
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1889
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 19
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.51
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2628
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2099
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2489
REMARK 3 BIN R VALUE (WORKING SET) : 0.2059
REMARK 3 BIN FREE R VALUE : 0.2875
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.29
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 139
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6925
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 36
REMARK 3 SOLVENT ATOMS : 533
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 54.29
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.36
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 3.61690
REMARK 3 B22 (A**2) : 1.23260
REMARK 3 B33 (A**2) : -4.84950
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 2.10610
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.335
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.492
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.288
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.446
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.287
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 7115 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 9608 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 2536 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 177 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 1039 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 7115 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 883 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 8474 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.10
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.70
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.56
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -20.4440 -14.7856 28.8239
REMARK 3 T TENSOR
REMARK 3 T11: -0.2077 T22: -0.1506
REMARK 3 T33: -0.3125 T12: 0.1093
REMARK 3 T13: 0.0276 T23: -0.0094
REMARK 3 L TENSOR
REMARK 3 L11: 0.8842 L22: 0.8664
REMARK 3 L33: 2.1334 L12: -0.0383
REMARK 3 L13: -0.3750 L23: 0.1892
REMARK 3 S TENSOR
REMARK 3 S11: -0.0555 S12: 0.0687 S13: 0.1268
REMARK 3 S21: 0.0985 S22: 0.0131 S23: 0.0209
REMARK 3 S31: -0.1469 S32: -0.5236 S33: 0.0425
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP.
REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY
REMARK 4
REMARK 4 5AE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-15.
REMARK 100 THE DEPOSITION ID IS D_1290064826.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-OCT-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID14-4
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0054
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37812
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440
REMARK 200 RESOLUTION RANGE LOW (A) : 59.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1
REMARK 200 DATA REDUNDANCY : 2.500
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45
REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1
REMARK 200 DATA REDUNDANCY IN SHELL : 2.30
REMARK 200 R MERGE FOR SHELL (I) : 0.47000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER
REMARK 200 SOFTWARE USED: BUSTER
REMARK 200 STARTING MODEL: NONE
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.05
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.15000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.31000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.15000
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.31000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 105
REMARK 465 GLY A 106
REMARK 465 ASP A 107
REMARK 465 TRP A 178
REMARK 465 ARG A 179
REMARK 465 ALA A 180
REMARK 465 GLY A 181
REMARK 465 LEU A 182
REMARK 465 LEU A 183
REMARK 465 ARG A 184
REMARK 465 VAL A 185
REMARK 465 SER A 186
REMARK 465 PRO A 292
REMARK 465 ALA A 293
REMARK 465 PRO A 294
REMARK 465 GLN A 295
REMARK 465 VAL A 296
REMARK 465 GLN A 297
REMARK 465 LYS A 298
REMARK 465 PRO A 299
REMARK 465 ARG A 300
REMARK 465 ALA A 301
REMARK 465 LYS A 302
REMARK 465 PRO A 303
REMARK 465 PRO A 304
REMARK 465 PRO A 305
REMARK 465 ILE A 306
REMARK 465 PRO A 307
REMARK 465 ALA A 308
REMARK 465 LYS A 309
REMARK 465 LYS A 310
REMARK 465 PRO A 311
REMARK 465 SER A 312
REMARK 465 SER A 313
REMARK 465 VAL A 314
REMARK 465 GLU A 399
REMARK 465 LYS A 400
REMARK 465 ALA A 401
REMARK 465 LYS A 402
REMARK 465 LYS A 403
REMARK 465 ALA A 404
REMARK 465 ARG A 405
REMARK 465 SER A 406
REMARK 465 THR A 407
REMARK 465 LYS A 408
REMARK 465 LYS A 409
REMARK 465 LYS A 410
REMARK 465 SER A 411
REMARK 465 LYS A 412
REMARK 465 LYS A 413
REMARK 465 ALA A 414
REMARK 465 PRO A 446
REMARK 465 ASP A 447
REMARK 465 GLU A 448
REMARK 465 LYS A 449
REMARK 465 GLY A 450
REMARK 465 GLU A 451
REMARK 465 ARG A 518
REMARK 465 GLY A 519
REMARK 465 SER A 520
REMARK 465 GLY A 521
REMARK 465 PHE A 919
REMARK 465 LYS A 920
REMARK 465 THR A 921
REMARK 465 LYS A 922
REMARK 465 PHE A 923
REMARK 465 GLY A 924
REMARK 465 ILE A 925
REMARK 465 ASN A 926
REMARK 465 ARG A 927
REMARK 465 TRP A 1033
REMARK 465 LEU A 1034
REMARK 465 ALA A 1035
REMARK 465 HIS A 1036
REMARK 465 ASN A 1037
REMARK 465 VAL A 1038
REMARK 465 SER A 1039
REMARK 465 LYS A 1040
REMARK 465 ASP A 1041
REMARK 465 ASN A 1042
REMARK 465 ARG A 1043
REMARK 465 GLN A 1044
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 123 134.25 -179.17
REMARK 500 GLU A 197 -65.99 -25.58
REMARK 500 TRP A 317 10.29 -66.74
REMARK 500 ILE A 328 -78.42 -69.08
REMARK 500 GLU A 368 75.79 -118.61
REMARK 500 ILE A 418 -63.74 -120.32
REMARK 500 ASN A 454 79.35 -115.72
REMARK 500 SER A 675 86.26 -151.03
REMARK 500 GLU A 742 -101.17 -89.65
REMARK 500 THR A 750 -155.59 -148.85
REMARK 500 HIS A 830 39.25 75.95
REMARK 500 ASP A 911 81.26 44.65
REMARK 500 ARG A 929 72.27 52.41
REMARK 500 ASN A 949 80.87 -160.77
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A2047 DISTANCE = 6.12 ANGSTROMS
REMARK 525 HOH A2053 DISTANCE = 6.09 ANGSTROMS
REMARK 525 HOH A2084 DISTANCE = 6.80 ANGSTROMS
REMARK 525 HOH A2166 DISTANCE = 6.64 ANGSTROMS
REMARK 525 HOH A2219 DISTANCE = 6.59 ANGSTROMS
REMARK 525 HOH A2515 DISTANCE = 8.95 ANGSTROMS
REMARK 525 HOH A2516 DISTANCE = 7.84 ANGSTROMS
REMARK 525 HOH A2517 DISTANCE = 6.85 ANGSTROMS
REMARK 525 HOH A2518 DISTANCE = 6.24 ANGSTROMS
REMARK 525 HOH A2519 DISTANCE = 5.93 ANGSTROMS
REMARK 525 HOH A2520 DISTANCE = 8.55 ANGSTROMS
REMARK 525 HOH A2521 DISTANCE = 6.24 ANGSTROMS
REMARK 525 HOH A2522 DISTANCE = 9.16 ANGSTROMS
REMARK 525 HOH A2524 DISTANCE = 5.84 ANGSTROMS
REMARK 525 HOH A2525 DISTANCE = 5.83 ANGSTROMS
REMARK 525 HOH A2526 DISTANCE = 7.56 ANGSTROMS
REMARK 525 HOH A2527 DISTANCE = 6.93 ANGSTROMS
REMARK 525 HOH A2528 DISTANCE = 6.85 ANGSTROMS
REMARK 525 HOH A2530 DISTANCE = 7.45 ANGSTROMS
REMARK 525 HOH A2531 DISTANCE = 6.54 ANGSTROMS
REMARK 525 HOH A2532 DISTANCE = 7.92 ANGSTROMS
REMARK 525 HOH A2533 DISTANCE = 6.89 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OKO A 4000
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5AE8 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF MOUSE PI3 KINASE DELTA IN COMPLEX WITH
REMARK 900 GSK2269557
DBREF 5AE9 A 106 1044 UNP O35904 PK3CD_MOUSE 106 1043
SEQADV 5AE9 GLY A 105 UNP O35904 EXPRESSION TAG
SEQADV 5AE9 GLN A 508 UNP O35904 INSERTION
SEQRES 1 A 940 GLY GLY ASP ARG VAL LYS LYS LEU ILE ASN SER GLN ILE
SEQRES 2 A 940 SER LEU LEU ILE GLY LYS GLY LEU HIS GLU PHE ASP SER
SEQRES 3 A 940 LEU ARG ASP PRO GLU VAL ASN ASP PHE ARG THR LYS MET
SEQRES 4 A 940 ARG GLN PHE CYS GLU GLU ALA ALA ALA HIS ARG GLN GLN
SEQRES 5 A 940 LEU GLY TRP VAL GLU TRP LEU GLN TYR SER PHE PRO LEU
SEQRES 6 A 940 GLN LEU GLU PRO SER ALA ARG GLY TRP ARG ALA GLY LEU
SEQRES 7 A 940 LEU ARG VAL SER ASN ARG ALA LEU LEU VAL ASN VAL LYS
SEQRES 8 A 940 PHE GLU GLY SER GLU GLU SER PHE THR PHE GLN VAL SER
SEQRES 9 A 940 THR LYS ASP MET PRO LEU ALA LEU MET ALA CYS ALA LEU
SEQRES 10 A 940 ARG LYS LYS ALA THR VAL PHE ARG GLN PRO LEU VAL GLU
SEQRES 11 A 940 GLN PRO GLU GLU TYR ALA LEU GLN VAL ASN GLY ARG HIS
SEQRES 12 A 940 GLU TYR LEU TYR GLY ASN TYR PRO LEU CYS HIS PHE GLN
SEQRES 13 A 940 TYR ILE CYS SER CYS LEU HIS SER GLY LEU THR PRO HIS
SEQRES 14 A 940 LEU THR MET VAL HIS SER SER SER ILE LEU ALA MET ARG
SEQRES 15 A 940 ASP GLU GLN SER ASN PRO ALA PRO GLN VAL GLN LYS PRO
SEQRES 16 A 940 ARG ALA LYS PRO PRO PRO ILE PRO ALA LYS LYS PRO SER
SEQRES 17 A 940 SER VAL SER LEU TRP SER LEU GLU GLN PRO PHE SER ILE
SEQRES 18 A 940 GLU LEU ILE GLU GLY ARG LYS VAL ASN ALA ASP GLU ARG
SEQRES 19 A 940 MET LYS LEU VAL VAL GLN ALA GLY LEU PHE HIS GLY ASN
SEQRES 20 A 940 GLU MET LEU CYS LYS THR VAL SER SER SER GLU VAL ASN
SEQRES 21 A 940 VAL CYS SER GLU PRO VAL TRP LYS GLN ARG LEU GLU PHE
SEQRES 22 A 940 ASP ILE SER VAL CYS ASP LEU PRO ARG MET ALA ARG LEU
SEQRES 23 A 940 CYS PHE ALA LEU TYR ALA VAL VAL GLU LYS ALA LYS LYS
SEQRES 24 A 940 ALA ARG SER THR LYS LYS LYS SER LYS LYS ALA ASP CYS
SEQRES 25 A 940 PRO ILE ALA TRP ALA ASN LEU MET LEU PHE ASP TYR LYS
SEQRES 26 A 940 ASP GLN LEU LYS THR GLY GLU ARG CYS LEU TYR MET TRP
SEQRES 27 A 940 PRO SER VAL PRO ASP GLU LYS GLY GLU LEU LEU ASN PRO
SEQRES 28 A 940 ALA GLY THR VAL ARG GLY ASN PRO ASN THR GLU SER ALA
SEQRES 29 A 940 ALA ALA LEU VAL ILE TYR LEU PRO GLU VAL ALA PRO HIS
SEQRES 30 A 940 PRO VAL TYR PHE PRO ALA LEU GLU LYS ILE LEU GLU LEU
SEQRES 31 A 940 GLY ARG HIS GLY GLU ARG GLY ARG ILE THR GLU GLU GLU
SEQRES 32 A 940 GLN LEU GLN LEU ARG GLU ILE LEU GLU ARG ARG GLY SER
SEQRES 33 A 940 GLY GLU LEU TYR GLU HIS GLU LYS ASP LEU VAL TRP LYS
SEQRES 34 A 940 MET ARG HIS GLU VAL GLN GLU HIS PHE PRO GLU ALA LEU
SEQRES 35 A 940 ALA ARG LEU LEU LEU VAL THR LYS TRP ASN LYS HIS GLU
SEQRES 36 A 940 ASP VAL ALA GLN MET LEU TYR LEU LEU CYS SER TRP PRO
SEQRES 37 A 940 GLU LEU PRO VAL LEU SER ALA LEU GLU LEU LEU ASP PHE
SEQRES 38 A 940 SER PHE PRO ASP CYS TYR VAL GLY SER PHE ALA ILE LYS
SEQRES 39 A 940 SER LEU ARG LYS LEU THR ASP ASP GLU LEU PHE GLN TYR
SEQRES 40 A 940 LEU LEU GLN LEU VAL GLN VAL LEU LYS TYR GLU SER TYR
SEQRES 41 A 940 LEU ASP CYS GLU LEU THR LYS PHE LEU LEU GLY ARG ALA
SEQRES 42 A 940 LEU ALA ASN ARG LYS ILE GLY HIS PHE LEU PHE TRP HIS
SEQRES 43 A 940 LEU ARG SER GLU MET HIS VAL PRO SER VAL ALA LEU ARG
SEQRES 44 A 940 PHE GLY LEU ILE MET GLU ALA TYR CYS ARG GLY SER THR
SEQRES 45 A 940 HIS HIS MET LYS VAL LEU MET LYS GLN GLY GLU ALA LEU
SEQRES 46 A 940 SER LYS LEU LYS ALA LEU ASN ASP PHE VAL LYS VAL SER
SEQRES 47 A 940 SER GLN LYS THR THR LYS PRO GLN THR LYS GLU MET MET
SEQRES 48 A 940 HIS MET CYS MET ARG GLN GLU THR TYR MET GLU ALA LEU
SEQRES 49 A 940 SER HIS LEU GLN SER PRO LEU ASP PRO SER THR LEU LEU
SEQRES 50 A 940 GLU GLU VAL CYS VAL GLU GLN CYS THR PHE MET ASP SER
SEQRES 51 A 940 LYS MET LYS PRO LEU TRP ILE MET TYR SER SER GLU GLU
SEQRES 52 A 940 ALA GLY SER ALA GLY ASN VAL GLY ILE ILE PHE LYS ASN
SEQRES 53 A 940 GLY ASP ASP LEU ARG GLN ASP MET LEU THR LEU GLN MET
SEQRES 54 A 940 ILE GLN LEU MET ASP VAL LEU TRP LYS GLN GLU GLY LEU
SEQRES 55 A 940 ASP LEU ARG MET THR PRO TYR GLY CYS LEU PRO THR GLY
SEQRES 56 A 940 ASP ARG THR GLY LEU ILE GLU VAL VAL LEU HIS SER ASP
SEQRES 57 A 940 THR ILE ALA ASN ILE GLN LEU ASN LYS SER ASN MET ALA
SEQRES 58 A 940 ALA THR ALA ALA PHE ASN LYS ASP ALA LEU LEU ASN TRP
SEQRES 59 A 940 LEU LYS SER LYS ASN PRO GLY GLU ALA LEU ASP ARG ALA
SEQRES 60 A 940 ILE GLU GLU PHE THR LEU SER CYS ALA GLY TYR CYS VAL
SEQRES 61 A 940 ALA THR TYR VAL LEU GLY ILE GLY ASP ARG HIS SER ASP
SEQRES 62 A 940 ASN ILE MET ILE ARG GLU SER GLY GLN LEU PHE HIS ILE
SEQRES 63 A 940 ASP PHE GLY HIS PHE LEU GLY ASN PHE LYS THR LYS PHE
SEQRES 64 A 940 GLY ILE ASN ARG GLU ARG VAL PRO PHE ILE LEU THR TYR
SEQRES 65 A 940 ASP PHE VAL HIS VAL ILE GLN GLN GLY LYS THR ASN ASN
SEQRES 66 A 940 SER GLU LYS PHE GLU ARG PHE ARG GLY TYR CYS GLU ARG
SEQRES 67 A 940 ALA TYR THR ILE LEU ARG ARG HIS GLY LEU LEU PHE LEU
SEQRES 68 A 940 HIS LEU PHE ALA LEU MET ARG ALA ALA GLY LEU PRO GLU
SEQRES 69 A 940 LEU SER CYS SER LYS ASP ILE GLN TYR LEU LYS ASP SER
SEQRES 70 A 940 LEU ALA LEU GLY LYS THR GLU GLU GLU ALA LEU LYS HIS
SEQRES 71 A 940 PHE ARG VAL LYS PHE ASN GLU ALA LEU ARG GLU SER TRP
SEQRES 72 A 940 LYS THR LYS VAL ASN TRP LEU ALA HIS ASN VAL SER LYS
SEQRES 73 A 940 ASP ASN ARG GLN
HET OKO A4000 36
HETNAM OKO N-[5-[4-(5-{[(2R,6S)-2,6-DIMETHYL-4-
HETNAM 2 OKO MORPHOLINYL]METHYL}-1,3-OXAZOL-2-YL)-1H-INDAZOL-6-YL]-
HETNAM 3 OKO 2-(METHYLOXY)-3-PYRIDINYL]METHANESULFONAMIDE
FORMUL 2 OKO C24 H28 N6 O5 S
FORMUL 3 HOH *533(H2 O)
HELIX 1 1 ARG A 108 GLY A 122 1 15
HELIX 2 2 LEU A 125 SER A 130 1 6
HELIX 3 3 ASP A 133 GLN A 155 1 23
HELIX 4 4 GLY A 158 PHE A 167 1 10
HELIX 5 5 MET A 212 ARG A 229 1 18
HELIX 6 6 GLN A 235 GLU A 237 5 3
HELIX 7 7 PRO A 255 HIS A 258 5 4
HELIX 8 8 PHE A 259 SER A 268 1 10
HELIX 9 9 SER A 279 GLN A 289 1 11
HELIX 10 10 SER A 315 LEU A 319 5 5
HELIX 11 11 ALA A 487 GLY A 495 1 9
HELIX 12 12 THR A 504 GLU A 516 1 13
HELIX 13 13 TYR A 524 MET A 534 1 11
HELIX 14 14 MET A 534 PHE A 542 1 9
HELIX 15 15 ALA A 545 THR A 553 1 9
HELIX 16 16 LYS A 557 SER A 570 1 14
HELIX 17 17 PRO A 575 LEU A 583 1 9
HELIX 18 18 ASP A 589 ARG A 601 1 13
HELIX 19 19 THR A 604 VAL A 618 1 15
HELIX 20 20 LEU A 619 TYR A 621 5 3
HELIX 21 21 CYS A 627 ASN A 640 1 14
HELIX 22 22 ASN A 640 SER A 653 1 14
HELIX 23 23 VAL A 660 SER A 675 1 16
HELIX 24 24 SER A 675 GLN A 704 1 30
HELIX 25 25 THR A 707 ARG A 720 1 14
HELIX 26 26 GLN A 721 LEU A 728 1 8
HELIX 27 27 VAL A 746 CYS A 749 5 4
HELIX 28 28 ALA A 768 ASN A 773 5 6
HELIX 29 29 LEU A 784 GLN A 803 1 20
HELIX 30 30 ILE A 834 LEU A 839 1 6
HELIX 31 31 PHE A 850 LYS A 852 5 3
HELIX 32 32 ASP A 853 ASN A 863 1 11
HELIX 33 33 GLU A 866 LEU A 889 1 24
HELIX 34 34 THR A 935 GLN A 943 1 9
HELIX 35 35 ASN A 949 ARG A 969 1 21
HELIX 36 36 HIS A 970 MET A 981 1 12
HELIX 37 37 ARG A 982 GLY A 985 5 4
HELIX 38 38 CYS A 991 LEU A 1002 1 12
HELIX 39 39 THR A 1007 ASN A 1032 1 26
SHEET 1 AA 5 SER A 202 SER A 208 0
SHEET 2 AA 5 ALA A 189 PHE A 196 -1 O LEU A 190 N VAL A 207
SHEET 3 AA 5 HIS A 273 HIS A 278 1 O LEU A 274 N LYS A 195
SHEET 4 AA 5 TYR A 239 VAL A 243 -1 O ALA A 240 N VAL A 277
SHEET 5 AA 5 TYR A 249 LEU A 250 -1 O LEU A 250 N LEU A 241
SHEET 1 AB 4 VAL A 370 SER A 380 0
SHEET 2 AB 4 PRO A 322 ARG A 331 -1 O PHE A 323 N PHE A 377
SHEET 3 AB 4 ALA A 470 LEU A 475 -1 O ALA A 470 N ARG A 331
SHEET 4 AB 4 GLY A 435 TYR A 440 -1 O GLY A 435 N LEU A 475
SHEET 1 AC 2 GLU A 352 MET A 353 0
SHEET 2 AC 2 LYS A 340 HIS A 349 -1 O HIS A 349 N GLU A 352
SHEET 1 AD 2 VAL A 358 SER A 359 0
SHEET 2 AD 2 LYS A 340 HIS A 349 -1 O ALA A 345 N VAL A 358
SHEET 1 AE 2 VAL A 363 ASN A 364 0
SHEET 2 AE 2 LYS A 340 HIS A 349 -1 O LEU A 341 N VAL A 363
SHEET 1 AF 5 TRP A 442 PRO A 443 0
SHEET 2 AF 5 CYS A 416 MET A 424 -1 O TRP A 420 N TRP A 442
SHEET 3 AF 5 ARG A 389 VAL A 397 -1 O LEU A 390 N LEU A 423
SHEET 4 AF 5 LYS A 340 HIS A 349 -1 O LYS A 340 N VAL A 397
SHEET 5 AF 5 GLU A 352 MET A 353 -1 O GLU A 352 N HIS A 349
SHEET 1 AG 5 TRP A 442 PRO A 443 0
SHEET 2 AG 5 CYS A 416 MET A 424 -1 O TRP A 420 N TRP A 442
SHEET 3 AG 5 ARG A 389 VAL A 397 -1 O LEU A 390 N LEU A 423
SHEET 4 AG 5 LYS A 340 HIS A 349 -1 O LYS A 340 N VAL A 397
SHEET 5 AG 5 VAL A 358 SER A 359 -1 O VAL A 358 N ALA A 345
SHEET 1 AH 2 LEU A 731 SER A 733 0
SHEET 2 AH 2 ASP A 736 LEU A 741 -1 N ASP A 736 O SER A 733
SHEET 1 AI 2 GLU A 743 VAL A 744 0
SHEET 2 AI 2 LEU A 759 SER A 764 -1 O SER A 764 N GLU A 743
SHEET 1 AJ 2 THR A 750 PHE A 751 0
SHEET 2 AJ 2 LEU A 759 SER A 764 -1 O TRP A 760 N THR A 750
SHEET 1 AK 5 CYS A 815 GLY A 819 0
SHEET 2 AK 5 THR A 822 GLU A 826 -1 O THR A 822 N THR A 818
SHEET 3 AK 5 VAL A 774 ASN A 780 -1 O ILE A 777 N ILE A 825
SHEET 4 AK 5 LEU A 759 SER A 764 -1 O LEU A 759 N PHE A 778
SHEET 5 AK 5 THR A 750 PHE A 751 -1 O THR A 750 N TRP A 760
SHEET 1 AL 5 CYS A 815 GLY A 819 0
SHEET 2 AL 5 THR A 822 GLU A 826 -1 O THR A 822 N THR A 818
SHEET 3 AL 5 VAL A 774 ASN A 780 -1 O ILE A 777 N ILE A 825
SHEET 4 AL 5 LEU A 759 SER A 764 -1 O LEU A 759 N PHE A 778
SHEET 5 AL 5 GLU A 743 VAL A 744 -1 O GLU A 743 N SER A 764
SHEET 1 AM 3 SER A 831 THR A 833 0
SHEET 2 AM 3 ILE A 899 ARG A 902 -1 O ILE A 901 N ASP A 832
SHEET 3 AM 3 LEU A 907 HIS A 909 -1 O PHE A 908 N MET A 900
SITE 1 AC1 18 MET A 752 SER A 754 TRP A 760 ILE A 777
SITE 2 AC1 18 LYS A 779 ASP A 787 ILE A 825 GLU A 826
SITE 3 AC1 18 VAL A 827 VAL A 828 ASP A 832 THR A 833
SITE 4 AC1 18 MET A 900 ILE A 910 ASP A 911 HOH A2373
SITE 5 AC1 18 HOH A2396 HOH A2514
CRYST1 142.300 64.620 116.370 90.00 103.32 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007027 0.000000 0.001664 0.00000
SCALE2 0.000000 0.015475 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008831 0.00000