HEADER TRANSFERASE 26-AUG-15 5AE9 TITLE CRYSTAL STRUCTURE OF MOUSE PI3 KINASE DELTA IN COMPLEX WITH GSK2292767 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT DELTA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: P110 SUBUNIT, UNP RESIDUES 106-1044; COMPND 6 SYNONYM: PI3-KINASE SUBUNIT DELTA,PI3K-DELTA,PI3KDELTA,PTDINS-3- COMPND 7 KINASE SUBUNIT DELTA,PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE COMPND 8 110 KDA CATALYTIC SUBUNIT DELTA,PTDINS-3-KINASE SUBUNIT P110-DELTA, COMPND 9 P110DELTA; COMPND 10 EC: 2.7.1.137,2.7.1.153; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIK3CD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.D.DOWN,A.AMOUR,I.R.BALDWIN,A.W.J.COOPER,A.M.DEAKIN,L.M.FELTON, AUTHOR 2 S.B.GUNTRIP,C.HARDY,Z.A.HARRISON,K.L.JONES,P.JONES,S.E.KEELING,J.LE, AUTHOR 3 S.LIVIA,F.LUCAS,C.J.LUNNISS,N.J.PARR,E.ROBINSON,P.ROWLAND,S.SMITH, AUTHOR 4 D.A.THOMAS,G.VITULLI,Y.WASHIO,N.HAMBLIN REVDAT 3 29-SEP-21 5AE9 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV REVDAT 2 07-OCT-15 5AE9 1 JRNL REVDAT 1 16-SEP-15 5AE9 0 JRNL AUTH K.DOWN,A.AMOUR,I.R.BALDWIN,A.W.J.COOPER,A.M.DEAKIN, JRNL AUTH 2 L.M.FELTON,S.B.GUNTRIP,C.HARDY,Z.A.HARRISON,K.L.JONES, JRNL AUTH 3 P.JONES,S.E.KEELING,J.LE,S.LIVIA,F.LUCAS,C.J.LUNNISS, JRNL AUTH 4 N.J.PARR,E.ROBINSON,P.ROWLAND,S.SMITH,D.A.THOMAS,G.VITULLI, JRNL AUTH 5 Y.WASHIO,J.N.HAMBLIN JRNL TITL OPTIMIZATION OF NOVEL INDAZOLES AS HIGHLY POTENT AND JRNL TITL 2 SELECTIVE INHIBITORS OF PHOSPHOINOSITIDE 3-KINASE GAMMA FOR JRNL TITL 3 THE TREATMENT OF RESPIRATORY DISEASE. JRNL REF J.MED.CHEM. V. 58 7381 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26301626 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00767 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 37804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1889 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2628 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2099 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2489 REMARK 3 BIN R VALUE (WORKING SET) : 0.2059 REMARK 3 BIN FREE R VALUE : 0.2875 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.29 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 139 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 533 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.61690 REMARK 3 B22 (A**2) : 1.23260 REMARK 3 B33 (A**2) : -4.84950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.10610 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.335 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.492 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.288 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.446 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.287 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7115 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9608 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2536 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 177 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1039 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7115 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 883 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8474 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.70 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.56 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -20.4440 -14.7856 28.8239 REMARK 3 T TENSOR REMARK 3 T11: -0.2077 T22: -0.1506 REMARK 3 T33: -0.3125 T12: 0.1093 REMARK 3 T13: 0.0276 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.8842 L22: 0.8664 REMARK 3 L33: 2.1334 L12: -0.0383 REMARK 3 L13: -0.3750 L23: 0.1892 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.0687 S13: 0.1268 REMARK 3 S21: 0.0985 S22: 0.0131 S23: 0.0209 REMARK 3 S31: -0.1469 S32: -0.5236 S33: 0.0425 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 5AE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0054 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37812 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 59.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.15000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 ASP A 107 REMARK 465 TRP A 178 REMARK 465 ARG A 179 REMARK 465 ALA A 180 REMARK 465 GLY A 181 REMARK 465 LEU A 182 REMARK 465 LEU A 183 REMARK 465 ARG A 184 REMARK 465 VAL A 185 REMARK 465 SER A 186 REMARK 465 PRO A 292 REMARK 465 ALA A 293 REMARK 465 PRO A 294 REMARK 465 GLN A 295 REMARK 465 VAL A 296 REMARK 465 GLN A 297 REMARK 465 LYS A 298 REMARK 465 PRO A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 LYS A 302 REMARK 465 PRO A 303 REMARK 465 PRO A 304 REMARK 465 PRO A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 LYS A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 SER A 313 REMARK 465 VAL A 314 REMARK 465 GLU A 399 REMARK 465 LYS A 400 REMARK 465 ALA A 401 REMARK 465 LYS A 402 REMARK 465 LYS A 403 REMARK 465 ALA A 404 REMARK 465 ARG A 405 REMARK 465 SER A 406 REMARK 465 THR A 407 REMARK 465 LYS A 408 REMARK 465 LYS A 409 REMARK 465 LYS A 410 REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 465 ALA A 414 REMARK 465 PRO A 446 REMARK 465 ASP A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLY A 450 REMARK 465 GLU A 451 REMARK 465 ARG A 518 REMARK 465 GLY A 519 REMARK 465 SER A 520 REMARK 465 GLY A 521 REMARK 465 PHE A 919 REMARK 465 LYS A 920 REMARK 465 THR A 921 REMARK 465 LYS A 922 REMARK 465 PHE A 923 REMARK 465 GLY A 924 REMARK 465 ILE A 925 REMARK 465 ASN A 926 REMARK 465 ARG A 927 REMARK 465 TRP A 1033 REMARK 465 LEU A 1034 REMARK 465 ALA A 1035 REMARK 465 HIS A 1036 REMARK 465 ASN A 1037 REMARK 465 VAL A 1038 REMARK 465 SER A 1039 REMARK 465 LYS A 1040 REMARK 465 ASP A 1041 REMARK 465 ASN A 1042 REMARK 465 ARG A 1043 REMARK 465 GLN A 1044 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 123 134.25 -179.17 REMARK 500 GLU A 197 -65.99 -25.58 REMARK 500 TRP A 317 10.29 -66.74 REMARK 500 ILE A 328 -78.42 -69.08 REMARK 500 GLU A 368 75.79 -118.61 REMARK 500 ILE A 418 -63.74 -120.32 REMARK 500 ASN A 454 79.35 -115.72 REMARK 500 SER A 675 86.26 -151.03 REMARK 500 GLU A 742 -101.17 -89.65 REMARK 500 THR A 750 -155.59 -148.85 REMARK 500 HIS A 830 39.25 75.95 REMARK 500 ASP A 911 81.26 44.65 REMARK 500 ARG A 929 72.27 52.41 REMARK 500 ASN A 949 80.87 -160.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2047 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2053 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A2084 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A2166 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A2219 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A2515 DISTANCE = 8.95 ANGSTROMS REMARK 525 HOH A2516 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A2517 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A2518 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2519 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2520 DISTANCE = 8.55 ANGSTROMS REMARK 525 HOH A2521 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2522 DISTANCE = 9.16 ANGSTROMS REMARK 525 HOH A2524 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2525 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2526 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH A2527 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A2528 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A2530 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH A2531 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A2532 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH A2533 DISTANCE = 6.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OKO A 4000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AE8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE PI3 KINASE DELTA IN COMPLEX WITH REMARK 900 GSK2269557 DBREF 5AE9 A 106 1044 UNP O35904 PK3CD_MOUSE 106 1043 SEQADV 5AE9 GLY A 105 UNP O35904 EXPRESSION TAG SEQADV 5AE9 GLN A 508 UNP O35904 INSERTION SEQRES 1 A 940 GLY GLY ASP ARG VAL LYS LYS LEU ILE ASN SER GLN ILE SEQRES 2 A 940 SER LEU LEU ILE GLY LYS GLY LEU HIS GLU PHE ASP SER SEQRES 3 A 940 LEU ARG ASP PRO GLU VAL ASN ASP PHE ARG THR LYS MET SEQRES 4 A 940 ARG GLN PHE CYS GLU GLU ALA ALA ALA HIS ARG GLN GLN SEQRES 5 A 940 LEU GLY TRP VAL GLU TRP LEU GLN TYR SER PHE PRO LEU SEQRES 6 A 940 GLN LEU GLU PRO SER ALA ARG GLY TRP ARG ALA GLY LEU SEQRES 7 A 940 LEU ARG VAL SER ASN ARG ALA LEU LEU VAL ASN VAL LYS SEQRES 8 A 940 PHE GLU GLY SER GLU GLU SER PHE THR PHE GLN VAL SER SEQRES 9 A 940 THR LYS ASP MET PRO LEU ALA LEU MET ALA CYS ALA LEU SEQRES 10 A 940 ARG LYS LYS ALA THR VAL PHE ARG GLN PRO LEU VAL GLU SEQRES 11 A 940 GLN PRO GLU GLU TYR ALA LEU GLN VAL ASN GLY ARG HIS SEQRES 12 A 940 GLU TYR LEU TYR GLY ASN TYR PRO LEU CYS HIS PHE GLN SEQRES 13 A 940 TYR ILE CYS SER CYS LEU HIS SER GLY LEU THR PRO HIS SEQRES 14 A 940 LEU THR MET VAL HIS SER SER SER ILE LEU ALA MET ARG SEQRES 15 A 940 ASP GLU GLN SER ASN PRO ALA PRO GLN VAL GLN LYS PRO SEQRES 16 A 940 ARG ALA LYS PRO PRO PRO ILE PRO ALA LYS LYS PRO SER SEQRES 17 A 940 SER VAL SER LEU TRP SER LEU GLU GLN PRO PHE SER ILE SEQRES 18 A 940 GLU LEU ILE GLU GLY ARG LYS VAL ASN ALA ASP GLU ARG SEQRES 19 A 940 MET LYS LEU VAL VAL GLN ALA GLY LEU PHE HIS GLY ASN SEQRES 20 A 940 GLU MET LEU CYS LYS THR VAL SER SER SER GLU VAL ASN SEQRES 21 A 940 VAL CYS SER GLU PRO VAL TRP LYS GLN ARG LEU GLU PHE SEQRES 22 A 940 ASP ILE SER VAL CYS ASP LEU PRO ARG MET ALA ARG LEU SEQRES 23 A 940 CYS PHE ALA LEU TYR ALA VAL VAL GLU LYS ALA LYS LYS SEQRES 24 A 940 ALA ARG SER THR LYS LYS LYS SER LYS LYS ALA ASP CYS SEQRES 25 A 940 PRO ILE ALA TRP ALA ASN LEU MET LEU PHE ASP TYR LYS SEQRES 26 A 940 ASP GLN LEU LYS THR GLY GLU ARG CYS LEU TYR MET TRP SEQRES 27 A 940 PRO SER VAL PRO ASP GLU LYS GLY GLU LEU LEU ASN PRO SEQRES 28 A 940 ALA GLY THR VAL ARG GLY ASN PRO ASN THR GLU SER ALA SEQRES 29 A 940 ALA ALA LEU VAL ILE TYR LEU PRO GLU VAL ALA PRO HIS SEQRES 30 A 940 PRO VAL TYR PHE PRO ALA LEU GLU LYS ILE LEU GLU LEU SEQRES 31 A 940 GLY ARG HIS GLY GLU ARG GLY ARG ILE THR GLU GLU GLU SEQRES 32 A 940 GLN LEU GLN LEU ARG GLU ILE LEU GLU ARG ARG GLY SER SEQRES 33 A 940 GLY GLU LEU TYR GLU HIS GLU LYS ASP LEU VAL TRP LYS SEQRES 34 A 940 MET ARG HIS GLU VAL GLN GLU HIS PHE PRO GLU ALA LEU SEQRES 35 A 940 ALA ARG LEU LEU LEU VAL THR LYS TRP ASN LYS HIS GLU SEQRES 36 A 940 ASP VAL ALA GLN MET LEU TYR LEU LEU CYS SER TRP PRO SEQRES 37 A 940 GLU LEU PRO VAL LEU SER ALA LEU GLU LEU LEU ASP PHE SEQRES 38 A 940 SER PHE PRO ASP CYS TYR VAL GLY SER PHE ALA ILE LYS SEQRES 39 A 940 SER LEU ARG LYS LEU THR ASP ASP GLU LEU PHE GLN TYR SEQRES 40 A 940 LEU LEU GLN LEU VAL GLN VAL LEU LYS TYR GLU SER TYR SEQRES 41 A 940 LEU ASP CYS GLU LEU THR LYS PHE LEU LEU GLY ARG ALA SEQRES 42 A 940 LEU ALA ASN ARG LYS ILE GLY HIS PHE LEU PHE TRP HIS SEQRES 43 A 940 LEU ARG SER GLU MET HIS VAL PRO SER VAL ALA LEU ARG SEQRES 44 A 940 PHE GLY LEU ILE MET GLU ALA TYR CYS ARG GLY SER THR SEQRES 45 A 940 HIS HIS MET LYS VAL LEU MET LYS GLN GLY GLU ALA LEU SEQRES 46 A 940 SER LYS LEU LYS ALA LEU ASN ASP PHE VAL LYS VAL SER SEQRES 47 A 940 SER GLN LYS THR THR LYS PRO GLN THR LYS GLU MET MET SEQRES 48 A 940 HIS MET CYS MET ARG GLN GLU THR TYR MET GLU ALA LEU SEQRES 49 A 940 SER HIS LEU GLN SER PRO LEU ASP PRO SER THR LEU LEU SEQRES 50 A 940 GLU GLU VAL CYS VAL GLU GLN CYS THR PHE MET ASP SER SEQRES 51 A 940 LYS MET LYS PRO LEU TRP ILE MET TYR SER SER GLU GLU SEQRES 52 A 940 ALA GLY SER ALA GLY ASN VAL GLY ILE ILE PHE LYS ASN SEQRES 53 A 940 GLY ASP ASP LEU ARG GLN ASP MET LEU THR LEU GLN MET SEQRES 54 A 940 ILE GLN LEU MET ASP VAL LEU TRP LYS GLN GLU GLY LEU SEQRES 55 A 940 ASP LEU ARG MET THR PRO TYR GLY CYS LEU PRO THR GLY SEQRES 56 A 940 ASP ARG THR GLY LEU ILE GLU VAL VAL LEU HIS SER ASP SEQRES 57 A 940 THR ILE ALA ASN ILE GLN LEU ASN LYS SER ASN MET ALA SEQRES 58 A 940 ALA THR ALA ALA PHE ASN LYS ASP ALA LEU LEU ASN TRP SEQRES 59 A 940 LEU LYS SER LYS ASN PRO GLY GLU ALA LEU ASP ARG ALA SEQRES 60 A 940 ILE GLU GLU PHE THR LEU SER CYS ALA GLY TYR CYS VAL SEQRES 61 A 940 ALA THR TYR VAL LEU GLY ILE GLY ASP ARG HIS SER ASP SEQRES 62 A 940 ASN ILE MET ILE ARG GLU SER GLY GLN LEU PHE HIS ILE SEQRES 63 A 940 ASP PHE GLY HIS PHE LEU GLY ASN PHE LYS THR LYS PHE SEQRES 64 A 940 GLY ILE ASN ARG GLU ARG VAL PRO PHE ILE LEU THR TYR SEQRES 65 A 940 ASP PHE VAL HIS VAL ILE GLN GLN GLY LYS THR ASN ASN SEQRES 66 A 940 SER GLU LYS PHE GLU ARG PHE ARG GLY TYR CYS GLU ARG SEQRES 67 A 940 ALA TYR THR ILE LEU ARG ARG HIS GLY LEU LEU PHE LEU SEQRES 68 A 940 HIS LEU PHE ALA LEU MET ARG ALA ALA GLY LEU PRO GLU SEQRES 69 A 940 LEU SER CYS SER LYS ASP ILE GLN TYR LEU LYS ASP SER SEQRES 70 A 940 LEU ALA LEU GLY LYS THR GLU GLU GLU ALA LEU LYS HIS SEQRES 71 A 940 PHE ARG VAL LYS PHE ASN GLU ALA LEU ARG GLU SER TRP SEQRES 72 A 940 LYS THR LYS VAL ASN TRP LEU ALA HIS ASN VAL SER LYS SEQRES 73 A 940 ASP ASN ARG GLN HET OKO A4000 36 HETNAM OKO N-[5-[4-(5-{[(2R,6S)-2,6-DIMETHYL-4- HETNAM 2 OKO MORPHOLINYL]METHYL}-1,3-OXAZOL-2-YL)-1H-INDAZOL-6-YL]- HETNAM 3 OKO 2-(METHYLOXY)-3-PYRIDINYL]METHANESULFONAMIDE FORMUL 2 OKO C24 H28 N6 O5 S FORMUL 3 HOH *533(H2 O) HELIX 1 1 ARG A 108 GLY A 122 1 15 HELIX 2 2 LEU A 125 SER A 130 1 6 HELIX 3 3 ASP A 133 GLN A 155 1 23 HELIX 4 4 GLY A 158 PHE A 167 1 10 HELIX 5 5 MET A 212 ARG A 229 1 18 HELIX 6 6 GLN A 235 GLU A 237 5 3 HELIX 7 7 PRO A 255 HIS A 258 5 4 HELIX 8 8 PHE A 259 SER A 268 1 10 HELIX 9 9 SER A 279 GLN A 289 1 11 HELIX 10 10 SER A 315 LEU A 319 5 5 HELIX 11 11 ALA A 487 GLY A 495 1 9 HELIX 12 12 THR A 504 GLU A 516 1 13 HELIX 13 13 TYR A 524 MET A 534 1 11 HELIX 14 14 MET A 534 PHE A 542 1 9 HELIX 15 15 ALA A 545 THR A 553 1 9 HELIX 16 16 LYS A 557 SER A 570 1 14 HELIX 17 17 PRO A 575 LEU A 583 1 9 HELIX 18 18 ASP A 589 ARG A 601 1 13 HELIX 19 19 THR A 604 VAL A 618 1 15 HELIX 20 20 LEU A 619 TYR A 621 5 3 HELIX 21 21 CYS A 627 ASN A 640 1 14 HELIX 22 22 ASN A 640 SER A 653 1 14 HELIX 23 23 VAL A 660 SER A 675 1 16 HELIX 24 24 SER A 675 GLN A 704 1 30 HELIX 25 25 THR A 707 ARG A 720 1 14 HELIX 26 26 GLN A 721 LEU A 728 1 8 HELIX 27 27 VAL A 746 CYS A 749 5 4 HELIX 28 28 ALA A 768 ASN A 773 5 6 HELIX 29 29 LEU A 784 GLN A 803 1 20 HELIX 30 30 ILE A 834 LEU A 839 1 6 HELIX 31 31 PHE A 850 LYS A 852 5 3 HELIX 32 32 ASP A 853 ASN A 863 1 11 HELIX 33 33 GLU A 866 LEU A 889 1 24 HELIX 34 34 THR A 935 GLN A 943 1 9 HELIX 35 35 ASN A 949 ARG A 969 1 21 HELIX 36 36 HIS A 970 MET A 981 1 12 HELIX 37 37 ARG A 982 GLY A 985 5 4 HELIX 38 38 CYS A 991 LEU A 1002 1 12 HELIX 39 39 THR A 1007 ASN A 1032 1 26 SHEET 1 AA 5 SER A 202 SER A 208 0 SHEET 2 AA 5 ALA A 189 PHE A 196 -1 O LEU A 190 N VAL A 207 SHEET 3 AA 5 HIS A 273 HIS A 278 1 O LEU A 274 N LYS A 195 SHEET 4 AA 5 TYR A 239 VAL A 243 -1 O ALA A 240 N VAL A 277 SHEET 5 AA 5 TYR A 249 LEU A 250 -1 O LEU A 250 N LEU A 241 SHEET 1 AB 4 VAL A 370 SER A 380 0 SHEET 2 AB 4 PRO A 322 ARG A 331 -1 O PHE A 323 N PHE A 377 SHEET 3 AB 4 ALA A 470 LEU A 475 -1 O ALA A 470 N ARG A 331 SHEET 4 AB 4 GLY A 435 TYR A 440 -1 O GLY A 435 N LEU A 475 SHEET 1 AC 2 GLU A 352 MET A 353 0 SHEET 2 AC 2 LYS A 340 HIS A 349 -1 O HIS A 349 N GLU A 352 SHEET 1 AD 2 VAL A 358 SER A 359 0 SHEET 2 AD 2 LYS A 340 HIS A 349 -1 O ALA A 345 N VAL A 358 SHEET 1 AE 2 VAL A 363 ASN A 364 0 SHEET 2 AE 2 LYS A 340 HIS A 349 -1 O LEU A 341 N VAL A 363 SHEET 1 AF 5 TRP A 442 PRO A 443 0 SHEET 2 AF 5 CYS A 416 MET A 424 -1 O TRP A 420 N TRP A 442 SHEET 3 AF 5 ARG A 389 VAL A 397 -1 O LEU A 390 N LEU A 423 SHEET 4 AF 5 LYS A 340 HIS A 349 -1 O LYS A 340 N VAL A 397 SHEET 5 AF 5 GLU A 352 MET A 353 -1 O GLU A 352 N HIS A 349 SHEET 1 AG 5 TRP A 442 PRO A 443 0 SHEET 2 AG 5 CYS A 416 MET A 424 -1 O TRP A 420 N TRP A 442 SHEET 3 AG 5 ARG A 389 VAL A 397 -1 O LEU A 390 N LEU A 423 SHEET 4 AG 5 LYS A 340 HIS A 349 -1 O LYS A 340 N VAL A 397 SHEET 5 AG 5 VAL A 358 SER A 359 -1 O VAL A 358 N ALA A 345 SHEET 1 AH 2 LEU A 731 SER A 733 0 SHEET 2 AH 2 ASP A 736 LEU A 741 -1 N ASP A 736 O SER A 733 SHEET 1 AI 2 GLU A 743 VAL A 744 0 SHEET 2 AI 2 LEU A 759 SER A 764 -1 O SER A 764 N GLU A 743 SHEET 1 AJ 2 THR A 750 PHE A 751 0 SHEET 2 AJ 2 LEU A 759 SER A 764 -1 O TRP A 760 N THR A 750 SHEET 1 AK 5 CYS A 815 GLY A 819 0 SHEET 2 AK 5 THR A 822 GLU A 826 -1 O THR A 822 N THR A 818 SHEET 3 AK 5 VAL A 774 ASN A 780 -1 O ILE A 777 N ILE A 825 SHEET 4 AK 5 LEU A 759 SER A 764 -1 O LEU A 759 N PHE A 778 SHEET 5 AK 5 THR A 750 PHE A 751 -1 O THR A 750 N TRP A 760 SHEET 1 AL 5 CYS A 815 GLY A 819 0 SHEET 2 AL 5 THR A 822 GLU A 826 -1 O THR A 822 N THR A 818 SHEET 3 AL 5 VAL A 774 ASN A 780 -1 O ILE A 777 N ILE A 825 SHEET 4 AL 5 LEU A 759 SER A 764 -1 O LEU A 759 N PHE A 778 SHEET 5 AL 5 GLU A 743 VAL A 744 -1 O GLU A 743 N SER A 764 SHEET 1 AM 3 SER A 831 THR A 833 0 SHEET 2 AM 3 ILE A 899 ARG A 902 -1 O ILE A 901 N ASP A 832 SHEET 3 AM 3 LEU A 907 HIS A 909 -1 O PHE A 908 N MET A 900 SITE 1 AC1 18 MET A 752 SER A 754 TRP A 760 ILE A 777 SITE 2 AC1 18 LYS A 779 ASP A 787 ILE A 825 GLU A 826 SITE 3 AC1 18 VAL A 827 VAL A 828 ASP A 832 THR A 833 SITE 4 AC1 18 MET A 900 ILE A 910 ASP A 911 HOH A2373 SITE 5 AC1 18 HOH A2396 HOH A2514 CRYST1 142.300 64.620 116.370 90.00 103.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007027 0.000000 0.001664 0.00000 SCALE2 0.000000 0.015475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008831 0.00000