HEADER HYDROLASE 06-JAN-15 5AEN TITLE STRUCTURE OF HUMAN LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH INHIBITOR TITLE 2 DIMETHYL(2- (4-PHENOXYPHENOXY)ETHYL)AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE, LEUKOTRIENE A4 HYDROLASE, LEUKOTRIENE A(4); COMPND 5 EC: 3.3.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 24 KEYWDS HYDROLASE, LEUKOTRIENE (LT) A4 HYDROLASE/AMINOPEPTIDASE, LTA4H EXPDTA X-RAY DIFFRACTION AUTHOR D.MOSER,S.K.WITTMANN,J.KRAMER,R.BLOCHER,J.ACHENBACH,D.POGORYELOV, AUTHOR 2 E.PROSCHAK REVDAT 4 10-JAN-24 5AEN 1 REMARK LINK REVDAT 3 27-FEB-19 5AEN 1 REMARK REVDAT 2 11-MAR-15 5AEN 1 JRNL REVDAT 1 11-FEB-15 5AEN 0 JRNL AUTH D.MOSER,S.K.WITTMANN,J.KRAMER,R.BLOCHER,J.ACHENBACH, JRNL AUTH 2 D.POGORYELOV,E.PROSCHAK JRNL TITL PENG: A NEURAL GAS-BASED APPROACH FOR PHARMACOPHORE JRNL TITL 2 ELUCIDATION. METHOD DESIGN, VALIDATION AND VIRTUAL SCREENING JRNL TITL 3 FOR NOVEL LIGANDS OF LTA4H. JRNL REF J.CHEM.INF.MODEL. V. 55 284 2015 JRNL REFN ISSN 1549-9596 JRNL PMID 25625859 JRNL DOI 10.1021/CI500618U REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 53240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7331 - 5.7889 1.00 3355 182 0.1925 0.1632 REMARK 3 2 5.7889 - 4.5959 1.00 3372 176 0.1612 0.1937 REMARK 3 3 4.5959 - 4.0152 1.00 3373 176 0.1502 0.1592 REMARK 3 4 4.0152 - 3.6482 1.00 3359 176 0.1610 0.1602 REMARK 3 5 3.6482 - 3.3868 1.00 3368 175 0.1729 0.1943 REMARK 3 6 3.3868 - 3.1872 1.00 3383 175 0.1892 0.1970 REMARK 3 7 3.1872 - 3.0276 1.00 3378 179 0.1908 0.1796 REMARK 3 8 3.0276 - 2.8958 1.00 3336 178 0.1842 0.1810 REMARK 3 9 2.8958 - 2.7843 1.00 3377 180 0.1692 0.2039 REMARK 3 10 2.7843 - 2.6882 1.00 3405 180 0.1671 0.1989 REMARK 3 11 2.6882 - 2.6042 1.00 3337 181 0.1614 0.1908 REMARK 3 12 2.6042 - 2.5298 1.00 3349 176 0.1609 0.1777 REMARK 3 13 2.5298 - 2.4632 1.00 3347 178 0.1633 0.1934 REMARK 3 14 2.4632 - 2.4031 1.00 3355 179 0.1575 0.1698 REMARK 3 15 2.4031 - 2.3484 1.00 3384 174 0.1507 0.1966 REMARK 3 16 2.3484 - 2.2985 1.00 3380 182 0.1565 0.1758 REMARK 3 17 2.2985 - 2.2525 1.00 3392 180 0.1602 0.1833 REMARK 3 18 2.2525 - 2.2100 1.00 3342 177 0.1588 0.1877 REMARK 3 19 2.2100 - 2.1705 1.00 3378 183 0.1564 0.1868 REMARK 3 20 2.1705 - 2.1337 1.00 3349 176 0.1601 0.2087 REMARK 3 21 2.1337 - 2.0993 1.00 3397 175 0.1648 0.2013 REMARK 3 22 2.0993 - 2.0670 1.00 3351 177 0.1667 0.1876 REMARK 3 23 2.0670 - 2.0366 0.99 3332 176 0.1648 0.1866 REMARK 3 24 2.0366 - 2.0079 0.98 3261 171 0.1748 0.2387 REMARK 3 25 2.0079 - 1.9808 0.94 3139 167 0.1813 0.2126 REMARK 3 26 1.9808 - 1.9551 0.88 3004 156 0.1973 0.2625 REMARK 3 27 1.9551 - 1.9306 0.82 2741 145 0.2011 0.2284 REMARK 3 28 1.9306 - 1.9074 0.65 2226 114 0.2127 0.2465 REMARK 3 29 1.9074 - 1.8852 0.47 1559 75 0.2248 0.2751 REMARK 3 30 1.8852 - 1.8640 0.21 716 39 0.2436 0.3154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5008 REMARK 3 ANGLE : 1.245 6802 REMARK 3 CHIRALITY : 0.073 756 REMARK 3 PLANARITY : 0.007 865 REMARK 3 DIHEDRAL : 14.192 1840 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1290062687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.728730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53242 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 49.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1GW6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MICROLITTER OF PROTEIN SOLUTION REMARK 280 CONTAINING 10MM TRIS-HCL, 25MM KCL, AND 4 MG/ML TO 8 MG/ML LTA4H REMARK 280 (PH 8) WAS MIXED AT DIFFERENT RATIOS (0.5:1, 1:1, AND 1:2) WITH REMARK 280 PRECIPITATE SOLUTION CONTAINING 0:15M IMIDAZOLE, 0:1M SODIUM REMARK 280 ACETATE PH 6, 14% PEG-8000, AND 5MM YBCL3, AND CRYSTALLIZED AT REMARK 280 17:4 C FOR TWO WEEKS BY HANGING DROP VAPOR-DIFFUSION METHOD, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.49800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.11150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.47650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.11150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.49800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.47650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 401 CD OE1 OE2 REMARK 470 ARG A 586 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 YB YB A 613 YB YB A 616 1545 0.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 79 71.84 -113.66 REMARK 500 SER A 80 -127.27 42.84 REMARK 500 ASN A 97 -5.22 76.44 REMARK 500 LYS A 126 -2.86 76.85 REMARK 500 GLU A 271 43.15 -80.63 REMARK 500 CYS A 274 -12.57 76.62 REMARK 500 LEU A 275 81.89 -157.15 REMARK 500 PHE A 432 39.25 -99.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 613 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 47 OD1 54.5 REMARK 620 3 ASP A 481 OD2 77.9 67.9 REMARK 620 4 ASP A 481 OD1 118.6 109.0 46.1 REMARK 620 5 HOH A2072 O 84.8 82.1 150.0 156.5 REMARK 620 6 HOH A2073 O 129.0 74.9 78.1 69.6 94.7 REMARK 620 7 HOH A2502 O 72.3 120.5 77.5 72.8 120.2 142.3 REMARK 620 8 HOH A2607 O 143.8 157.2 121.8 75.9 86.2 86.7 82.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 616 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 47 OD1 52.5 REMARK 620 3 ASP A 481 OD2 88.0 73.7 REMARK 620 4 ASP A 481 OD1 141.3 120.3 56.6 REMARK 620 5 HOH A2072 O 72.9 68.3 141.6 144.7 REMARK 620 6 HOH A2073 O 121.1 69.3 84.1 74.3 78.4 REMARK 620 7 HOH A2502 O 79.2 130.3 95.9 88.6 112.1 159.7 REMARK 620 8 HOH A2607 O 133.5 133.6 137.7 81.4 72.1 80.0 86.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 614 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE1 REMARK 620 2 GLU A 70 OE2 54.6 REMARK 620 3 GLU A 121 OE1 114.3 114.6 REMARK 620 4 GLU A 121 OE2 70.0 67.5 51.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 612 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 HIS A 299 NE2 100.3 REMARK 620 3 GLU A 318 OE1 100.2 111.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 615 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 422 OD2 REMARK 620 2 ASP A 422 OD1 52.6 REMARK 620 3 ASP A 426 OD1 97.9 71.2 REMARK 620 4 ASP A 426 OD2 74.1 93.1 52.8 REMARK 620 5 HOH A2444 O 124.9 73.9 74.0 126.4 REMARK 620 6 HOH A2445 O 75.3 76.6 143.3 147.6 80.7 REMARK 620 7 HOH A2446 O 78.1 130.7 123.8 72.8 151.3 90.7 REMARK 620 8 HOH A2454 O 147.7 145.6 77.0 77.8 84.9 127.0 78.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DP8 A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 618 DBREF 5AEN A 3 610 UNP P09960 LKHA4_HUMAN 4 611 SEQRES 1 A 608 ILE VAL ASP THR CYS SER LEU ALA SER PRO ALA SER VAL SEQRES 2 A 608 CYS ARG THR LYS HIS LEU HIS LEU ARG CYS SER VAL ASP SEQRES 3 A 608 PHE THR ARG ARG THR LEU THR GLY THR ALA ALA LEU THR SEQRES 4 A 608 VAL GLN SER GLN GLU ASP ASN LEU ARG SER LEU VAL LEU SEQRES 5 A 608 ASP THR LYS ASP LEU THR ILE GLU LYS VAL VAL ILE ASN SEQRES 6 A 608 GLY GLN GLU VAL LYS TYR ALA LEU GLY GLU ARG GLN SER SEQRES 7 A 608 TYR LYS GLY SER PRO MET GLU ILE SER LEU PRO ILE ALA SEQRES 8 A 608 LEU SER LYS ASN GLN GLU ILE VAL ILE GLU ILE SER PHE SEQRES 9 A 608 GLU THR SER PRO LYS SER SER ALA LEU GLN TRP LEU THR SEQRES 10 A 608 PRO GLU GLN THR SER GLY LYS GLU HIS PRO TYR LEU PHE SEQRES 11 A 608 SER GLN CYS GLN ALA ILE HIS CYS ARG ALA ILE LEU PRO SEQRES 12 A 608 CYS GLN ASP THR PRO SER VAL LYS LEU THR TYR THR ALA SEQRES 13 A 608 GLU VAL SER VAL PRO LYS GLU LEU VAL ALA LEU MET SER SEQRES 14 A 608 ALA ILE ARG ASP GLY GLU THR PRO ASP PRO GLU ASP PRO SEQRES 15 A 608 SER ARG LYS ILE TYR LYS PHE ILE GLN LYS VAL PRO ILE SEQRES 16 A 608 PRO CYS TYR LEU ILE ALA LEU VAL VAL GLY ALA LEU GLU SEQRES 17 A 608 SER ARG GLN ILE GLY PRO ARG THR LEU VAL TRP SER GLU SEQRES 18 A 608 LYS GLU GLN VAL GLU LYS SER ALA TYR GLU PHE SER GLU SEQRES 19 A 608 THR GLU SER MET LEU LYS ILE ALA GLU ASP LEU GLY GLY SEQRES 20 A 608 PRO TYR VAL TRP GLY GLN TYR ASP LEU LEU VAL LEU PRO SEQRES 21 A 608 PRO SER PHE PRO TYR GLY GLY MET GLU ASN PRO CYS LEU SEQRES 22 A 608 THR PHE VAL THR PRO THR LEU LEU ALA GLY ASP LYS SER SEQRES 23 A 608 LEU SER ASN VAL ILE ALA HIS GLU ILE SER HIS SER TRP SEQRES 24 A 608 THR GLY ASN LEU VAL THR ASN LYS THR TRP ASP HIS PHE SEQRES 25 A 608 TRP LEU ASN GLU GLY HIS THR VAL TYR LEU GLU ARG HIS SEQRES 26 A 608 ILE CYS GLY ARG LEU PHE GLY GLU LYS PHE ARG HIS PHE SEQRES 27 A 608 ASN ALA LEU GLY GLY TRP GLY GLU LEU GLN ASN SER VAL SEQRES 28 A 608 LYS THR PHE GLY GLU THR HIS PRO PHE THR LYS LEU VAL SEQRES 29 A 608 VAL ASP LEU THR ASP ILE ASP PRO ASP VAL ALA TYR SER SEQRES 30 A 608 SER VAL PRO TYR GLU LYS GLY PHE ALA LEU LEU PHE TYR SEQRES 31 A 608 LEU GLU GLN LEU LEU GLY GLY PRO GLU ILE PHE LEU GLY SEQRES 32 A 608 PHE LEU LYS ALA TYR VAL GLU LYS PHE SER TYR LYS SER SEQRES 33 A 608 ILE THR THR ASP ASP TRP LYS ASP PHE LEU TYR SER TYR SEQRES 34 A 608 PHE LYS ASP LYS VAL ASP VAL LEU ASN GLN VAL ASP TRP SEQRES 35 A 608 ASN ALA TRP LEU TYR SER PRO GLY LEU PRO PRO ILE LYS SEQRES 36 A 608 PRO ASN TYR ASP MET THR LEU THR ASN ALA CYS ILE ALA SEQRES 37 A 608 LEU SER GLN ARG TRP ILE THR ALA LYS GLU ASP ASP LEU SEQRES 38 A 608 ASN SER PHE ASN ALA THR ASP LEU LYS ASP LEU SER SER SEQRES 39 A 608 HIS GLN LEU ASN GLU PHE LEU ALA GLN THR LEU GLN ARG SEQRES 40 A 608 ALA PRO LEU PRO LEU GLY HIS ILE LYS ARG MET GLN GLU SEQRES 41 A 608 VAL TYR ASN PHE ASN ALA ILE ASN ASN SER GLU ILE ARG SEQRES 42 A 608 PHE ARG TRP LEU ARG LEU CYS ILE GLN SER LYS TRP GLU SEQRES 43 A 608 ASP ALA ILE PRO LEU ALA LEU LYS MET ALA THR GLU GLN SEQRES 44 A 608 GLY ARG MET LYS PHE THR ARG PRO LEU PHE LYS ASP LEU SEQRES 45 A 608 ALA ALA PHE ASP LYS SER HIS ASP GLN ALA VAL ARG THR SEQRES 46 A 608 TYR GLN GLU HIS LYS ALA SER MET HIS PRO VAL THR ALA SEQRES 47 A 608 MET LEU VAL GLY LYS ASP LEU LYS VAL ASP HET DP8 A 611 19 HET ZN A 612 1 HET YB A 613 1 HET YB A 614 1 HET YB A 615 1 HET YB A 616 1 HET IMD A 617 5 HET IMD A 618 5 HETNAM DP8 N,N-DIMETHYL-2-(4-PHENOXYPHENOXY)ETHANAMINE HETNAM ZN ZINC ION HETNAM YB YTTERBIUM (III) ION HETNAM IMD IMIDAZOLE FORMUL 2 DP8 C16 H19 N O2 FORMUL 3 ZN ZN 2+ FORMUL 4 YB 4(YB 3+) FORMUL 8 IMD 2(C3 H5 N2 1+) FORMUL 10 HOH *608(H2 O) HELIX 1 1 GLN A 79 GLY A 83 5 5 HELIX 2 2 THR A 119 THR A 123 5 5 HELIX 3 3 HIS A 139 ILE A 143 5 5 HELIX 4 4 PRO A 198 ILE A 202 5 5 HELIX 5 5 GLU A 223 PHE A 234 1 12 HELIX 6 6 GLU A 236 GLY A 249 1 14 HELIX 7 7 PRO A 280 LEU A 283 5 4 HELIX 8 8 SER A 290 HIS A 299 1 10 HELIX 9 9 THR A 310 ASP A 312 5 3 HELIX 10 10 HIS A 313 GLY A 334 1 22 HELIX 11 11 GLY A 334 GLY A 357 1 24 HELIX 12 12 HIS A 360 LYS A 364 5 5 HELIX 13 13 ASP A 373 TYR A 378 1 6 HELIX 14 14 SER A 380 LEU A 397 1 18 HELIX 15 15 GLY A 399 SER A 415 1 17 HELIX 16 16 THR A 420 PHE A 432 1 13 HELIX 17 17 LYS A 435 ASN A 440 1 6 HELIX 18 18 ASP A 443 SER A 450 1 8 HELIX 19 19 THR A 465 ALA A 478 1 14 HELIX 20 20 LYS A 479 PHE A 486 5 8 HELIX 21 21 ASN A 487 LYS A 492 5 6 HELIX 22 22 SER A 495 GLN A 508 1 14 HELIX 23 23 PRO A 513 ASN A 525 1 13 HELIX 24 24 PHE A 526 ILE A 529 5 4 HELIX 25 25 ASN A 531 SER A 545 1 15 HELIX 26 26 TRP A 547 ASP A 549 5 3 HELIX 27 27 ALA A 550 GLN A 561 1 12 HELIX 28 28 ARG A 563 PHE A 577 1 15 HELIX 29 29 SER A 580 LYS A 592 1 13 HELIX 30 30 ALA A 593 MET A 595 5 3 HELIX 31 31 HIS A 596 LYS A 608 1 13 SHEET 1 AA 8 GLN A 69 GLU A 70 0 SHEET 2 AA 8 LEU A 59 ILE A 66 -1 O ILE A 66 N GLN A 69 SHEET 3 AA 8 GLU A 99 THR A 108 -1 O GLU A 103 N VAL A 65 SHEET 4 AA 8 THR A 33 SER A 44 -1 O LEU A 34 N THR A 108 SHEET 5 AA 8 CYS A 16 ASP A 28 -1 O ARG A 17 N GLN A 43 SHEET 6 AA 8 LEU A 154 PRO A 163 1 O THR A 155 N LEU A 21 SHEET 7 AA 8 ASP A 183 ILE A 197 -1 O LYS A 187 N VAL A 162 SHEET 8 AA 8 ILE A 173 ASP A 180 -1 O ILE A 173 N ILE A 192 SHEET 1 AB 3 LEU A 49 LEU A 54 0 SHEET 2 AB 3 MET A 86 LEU A 94 -1 O MET A 86 N LEU A 54 SHEET 3 AB 3 TYR A 73 LEU A 75 -1 O ALA A 74 N GLU A 87 SHEET 1 AC 4 LEU A 115 LEU A 118 0 SHEET 2 AC 4 TYR A 130 SER A 133 -1 O TYR A 130 N LEU A 118 SHEET 3 AC 4 LEU A 204 GLY A 207 -1 O LEU A 204 N SER A 133 SHEET 4 AC 4 VAL A 167 MET A 170 -1 O VAL A 167 N GLY A 207 SHEET 1 AD 5 GLU A 210 GLY A 215 0 SHEET 2 AD 5 THR A 218 SER A 222 -1 O THR A 218 N ILE A 214 SHEET 3 AD 5 ASP A 257 VAL A 260 1 O LEU A 258 N TRP A 221 SHEET 4 AD 5 LEU A 275 VAL A 278 1 O THR A 276 N LEU A 259 SHEET 5 AD 5 GLY A 269 MET A 270 -1 O MET A 270 N PHE A 277 SHEET 1 AE 2 VAL A 306 ASN A 308 0 SHEET 2 AE 2 LYS A 417 ILE A 419 1 O LYS A 417 N THR A 307 LINK OD2 ASP A 47 YB YB A 613 1545 1555 2.50 LINK OD1 ASP A 47 YB YB A 613 1545 1555 2.41 LINK OD2 ASP A 47 YB YB A 616 1555 1555 2.51 LINK OD1 ASP A 47 YB YB A 616 1555 1555 2.57 LINK OE1 GLU A 70 YB YB A 614 3544 1555 2.45 LINK OE2 GLU A 70 YB YB A 614 3544 1555 2.43 LINK OE1 GLU A 121 YB YB A 614 1555 1555 2.63 LINK OE2 GLU A 121 YB YB A 614 1555 1555 2.39 LINK NE2 HIS A 295 ZN ZN A 612 1555 1555 2.11 LINK NE2 HIS A 299 ZN ZN A 612 1555 1555 2.08 LINK OE1 GLU A 318 ZN ZN A 612 1555 1555 2.03 LINK OD2 ASP A 422 YB YB A 615 1555 1555 2.54 LINK OD1 ASP A 422 YB YB A 615 1555 1555 2.50 LINK OD1 ASP A 426 YB YB A 615 1555 1555 2.55 LINK OD2 ASP A 426 YB YB A 615 1555 1555 2.40 LINK OD2 ASP A 481 YB YB A 613 1555 1555 2.79 LINK OD1 ASP A 481 YB YB A 613 1555 1555 2.84 LINK OD2 ASP A 481 YB YB A 616 1565 1555 2.29 LINK OD1 ASP A 481 YB YB A 616 1565 1555 2.37 LINK YB YB A 613 O HOH A2072 1555 1545 2.31 LINK YB YB A 613 O HOH A2073 1555 1545 2.52 LINK YB YB A 613 O HOH A2502 1555 1555 2.84 LINK YB YB A 613 O HOH A2607 1555 1545 2.55 LINK YB YB A 615 O HOH A2444 1555 1555 2.54 LINK YB YB A 615 O HOH A2445 1555 1555 2.66 LINK YB YB A 615 O HOH A2446 1555 1555 2.52 LINK YB YB A 615 O HOH A2454 1555 1555 2.69 LINK YB YB A 616 O HOH A2072 1555 1555 2.93 LINK YB YB A 616 O HOH A2073 1555 1555 2.70 LINK YB YB A 616 O HOH A2502 1555 1565 2.45 LINK YB YB A 616 O HOH A2607 1555 1555 2.71 CISPEP 1 GLN A 136 ALA A 137 0 0.69 CISPEP 2 ALA A 510 PRO A 511 0 4.11 SITE 1 AC1 11 GLN A 136 TYR A 267 GLY A 269 MET A 270 SITE 2 AC1 11 TRP A 311 PHE A 314 VAL A 367 PRO A 374 SITE 3 AC1 11 ALA A 377 TYR A 378 TYR A 383 SITE 1 AC2 5 HIS A 295 HIS A 299 GLU A 318 TYR A 383 SITE 2 AC2 5 HOH A2342 SITE 1 AC3 6 ASP A 47 ASP A 481 HOH A2072 HOH A2073 SITE 2 AC3 6 HOH A2502 HOH A2607 SITE 1 AC4 2 GLU A 70 GLU A 121 SITE 1 AC5 6 ASP A 422 ASP A 426 HOH A2444 HOH A2445 SITE 2 AC5 6 HOH A2446 HOH A2454 SITE 1 AC6 6 ASP A 47 ASP A 481 HOH A2072 HOH A2073 SITE 2 AC6 6 HOH A2502 HOH A2607 SITE 1 AC7 7 GLY A 344 GLY A 347 GLU A 348 ASN A 351 SITE 2 AC7 7 GLU A 501 ALA A 504 GLN A 508 SITE 1 AC8 7 SER A 288 LEU A 289 SER A 496 HIS A 497 SITE 2 AC8 7 ASN A 500 ASN A 531 HOH A2608 CRYST1 76.996 86.953 98.223 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010181 0.00000