HEADER IMMUNE SYSTEM 07-JAN-15 5AEO TITLE VIRULENCE-ASSOCIATED PROTEIN VAPG FROM THE INTRACELLULAR PATHOGEN TITLE 2 RHODOCOCCUS EQUI COMPND MOL_ID: 1; COMPND 2 MOLECULE: R. EQUI VAPG PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 27-172; COMPND 5 SYNONYM: VIRULENCE-ASSOCIATED PROTEIN G; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS EQUI; SOURCE 3 ORGANISM_TAXID: 685727; SOURCE 4 STRAIN: 103S; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS IMMUNE SYSTEM, BETA BARREL, BACTERIAL PATHOGEN, VIRULENCE PROTEIN, KEYWDS 2 INTRACELLULAR PATHOGEN EXPDTA X-RAY DIFFRACTION AUTHOR T.OKOKO,E.V.BLAGOVA,J.L.WHITTINGHAM,L.G.DOVER,A.J.WILKINSON REVDAT 3 10-JAN-24 5AEO 1 REMARK LINK REVDAT 2 05-AUG-15 5AEO 1 JRNL REVDAT 1 25-MAR-15 5AEO 0 JRNL AUTH T.OKOKO,E.V.BLAGOVA,J.L.WHITTINGHAM,L.G.DOVER,A.J.WILKINSON JRNL TITL STRUCTURAL CHARACTERISATION OF THE VIRULENCE-ASSOCIATED JRNL TITL 2 PROTEIN VAPG FROM THE HORSE PATHOGEN RHODOCOCCUS EQUI. JRNL REF VET.MICROBIOL. V. 179 42 2015 JRNL REFN ISSN 0378-1135 JRNL PMID 25746683 JRNL DOI 10.1016/J.VETMIC.2015.01.027 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 23612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.943 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1638 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1461 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2228 ; 1.893 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3355 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 6.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;33.433 ;24.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 215 ;12.647 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1918 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 398 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 875 ; 3.101 ; 2.935 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 874 ; 3.069 ; 2.932 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1086 ; 3.982 ; 4.378 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 762 ; 3.718 ; 3.329 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. C-TERMINAL PEPTIDE FRAGMENTS IN MOLECULES A AND B REMARK 3 VIOLATE CRYSTALLOGRAPHIC SYMMETRY REMARK 4 REMARK 4 5AEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1290062697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24979 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4CSB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 30 MG/ML VAPG IN 10 REMARK 280 MM TRIS-HCL PH 7.5, 10 MM NACL RESERVOIR: 0.3 M KCL, 20 % W/V REMARK 280 PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.83500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.27500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.91750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.27500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 194.75250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.27500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.91750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.27500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 194.75250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 129.83500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 HIS A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ASN A 18 REMARK 465 THR A 19 REMARK 465 TYR A 20 REMARK 465 ASP A 21 REMARK 465 PHE A 22 REMARK 465 ALA A 23 REMARK 465 GLU A 24 REMARK 465 ALA A 25 REMARK 465 LYS A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 ILE A 31 REMARK 465 PRO A 32 REMARK 465 ALA A 33 REMARK 465 LYS A 34 REMARK 465 VAL A 35 REMARK 465 ALA A 36 REMARK 465 ALA A 37 REMARK 465 GLU A 38 REMARK 465 GLN A 39 REMARK 465 ALA A 40 REMARK 465 ASN A 41 REMARK 465 ASN A 148 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 SER A 151 REMARK 465 VAL A 152 REMARK 465 ASP A 153 REMARK 465 ALA A 158 REMARK 465 LEU A 159 REMARK 465 GLU A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 MET B 0 REMARK 465 GLU B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 MET B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 THR B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 HIS B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 ASN B 18 REMARK 465 THR B 19 REMARK 465 TYR B 20 REMARK 465 ASP B 21 REMARK 465 PHE B 22 REMARK 465 ALA B 23 REMARK 465 GLU B 24 REMARK 465 ALA B 25 REMARK 465 LYS B 26 REMARK 465 SER B 27 REMARK 465 GLY B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 ILE B 31 REMARK 465 PRO B 32 REMARK 465 ALA B 33 REMARK 465 LYS B 34 REMARK 465 VAL B 35 REMARK 465 ALA B 36 REMARK 465 ALA B 37 REMARK 465 GLU B 38 REMARK 465 GLN B 39 REMARK 465 ALA B 40 REMARK 465 ASN B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 SER B 151 REMARK 465 VAL B 152 REMARK 465 ASP B 153 REMARK 465 LYS B 154 REMARK 465 LEU B 155 REMARK 465 ALA B 156 REMARK 465 ALA B 157 REMARK 465 ALA B 158 REMARK 465 LEU B 159 REMARK 465 GLU B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 154 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 60 CG CD1 CD2 REMARK 480 GLU B 85 CG CD OE1 OE2 REMARK 480 GLN B 94 CG CD OE1 NE2 REMARK 480 HIS B 162 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HIS B 163 O HIS B 164 7555 0.58 REMARK 500 O ALA A 156 O ALA A 157 7465 0.61 REMARK 500 C ALA A 156 C ALA A 157 7465 0.90 REMARK 500 C HIS B 163 C HIS B 164 7555 1.03 REMARK 500 C ALA A 156 O ALA A 157 7465 1.04 REMARK 500 O HIS B 163 C HIS B 164 7555 1.20 REMARK 500 C HIS B 163 O HIS B 164 7555 1.69 REMARK 500 O ALA A 156 C ALA A 157 7465 1.76 REMARK 500 CD2 HIS B 162 O HOH A 2034 7455 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 60 CB LEU A 60 CG -0.209 REMARK 500 GLN B 94 CB GLN B 94 CG -0.406 REMARK 500 HIS B 163 C HIS B 163 O 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 94 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 -136.73 -108.59 REMARK 500 LEU B 52 -136.22 -117.19 REMARK 500 ASP B 92 86.53 -154.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1158 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 106 OD1 REMARK 620 2 ASN A 106 O 65.2 REMARK 620 3 VAL A 108 O 80.6 110.8 REMARK 620 4 TYR A 111 O 132.6 81.0 81.7 REMARK 620 5 ASN A 113 OD1 126.0 89.3 152.5 83.3 REMARK 620 6 HOH A2050 O 135.1 146.6 60.3 66.2 92.5 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1158 DBREF 5AEO A 1 146 UNP Q9EU62 Q9EU62_RHOHA 27 172 DBREF 5AEO B 1 146 UNP Q9EU62 Q9EU62_RHOHA 27 172 SEQADV 5AEO MET A 0 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO PRO A 147 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ASN A 148 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO SER A 149 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO SER A 150 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO SER A 151 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO VAL A 152 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ASP A 153 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO LYS A 154 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO LEU A 155 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ALA A 156 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ALA A 157 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ALA A 158 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO LEU A 159 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO GLU A 160 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS A 161 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS A 162 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS A 163 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS A 164 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS A 165 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS A 166 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO MET B 0 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO PRO B 147 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ASN B 148 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO SER B 149 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO SER B 150 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO SER B 151 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO VAL B 152 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ASP B 153 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO LYS B 154 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO LEU B 155 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ALA B 156 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ALA B 157 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO ALA B 158 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO LEU B 159 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO GLU B 160 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS B 161 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS B 162 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS B 163 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS B 164 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS B 165 UNP Q9EU62 EXPRESSION TAG SEQADV 5AEO HIS B 166 UNP Q9EU62 EXPRESSION TAG SEQRES 1 A 167 MET GLU THR SER MET VAL SER THR THR ALA ALA SER SER SEQRES 2 A 167 VAL GLU HIS ALA ALA ASN THR TYR ASP PHE ALA GLU ALA SEQRES 3 A 167 LYS SER GLY SER SER ILE PRO ALA LYS VAL ALA ALA GLU SEQRES 4 A 167 GLN ALA ASN SER TYR SER VAL HIS GLY LEU VAL THR SER SEQRES 5 A 167 LEU ALA VAL TYR GLN HIS PHE SER LEU THR VAL GLU GLY SEQRES 6 A 167 GLY GLY LYS THR PHE THR GLY ASP SER GLY GLY ILE SER SEQRES 7 A 167 ILE PRO GLY VAL ALA VAL LEU GLU GLY THR LEU PHE THR SEQRES 8 A 167 GLU ASP LEU GLN HIS LEU TYR SER ASP THR VAL SER PHE SEQRES 9 A 167 GLU TYR ASN ALA VAL GLY PRO TYR LEU ASN ILE ASN PHE SEQRES 10 A 167 PHE ASP SER HIS GLY THR LEU LEU GLY HIS VAL GLN SER SEQRES 11 A 167 GLY SER ILE GLY THR VAL SER GLY ILE GLY GLY GLY THR SEQRES 12 A 167 GLY GLY TRP GLN PRO ASN SER SER SER VAL ASP LYS LEU SEQRES 13 A 167 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 167 MET GLU THR SER MET VAL SER THR THR ALA ALA SER SER SEQRES 2 B 167 VAL GLU HIS ALA ALA ASN THR TYR ASP PHE ALA GLU ALA SEQRES 3 B 167 LYS SER GLY SER SER ILE PRO ALA LYS VAL ALA ALA GLU SEQRES 4 B 167 GLN ALA ASN SER TYR SER VAL HIS GLY LEU VAL THR SER SEQRES 5 B 167 LEU ALA VAL TYR GLN HIS PHE SER LEU THR VAL GLU GLY SEQRES 6 B 167 GLY GLY LYS THR PHE THR GLY ASP SER GLY GLY ILE SER SEQRES 7 B 167 ILE PRO GLY VAL ALA VAL LEU GLU GLY THR LEU PHE THR SEQRES 8 B 167 GLU ASP LEU GLN HIS LEU TYR SER ASP THR VAL SER PHE SEQRES 9 B 167 GLU TYR ASN ALA VAL GLY PRO TYR LEU ASN ILE ASN PHE SEQRES 10 B 167 PHE ASP SER HIS GLY THR LEU LEU GLY HIS VAL GLN SER SEQRES 11 B 167 GLY SER ILE GLY THR VAL SER GLY ILE GLY GLY GLY THR SEQRES 12 B 167 GLY GLY TRP GLN PRO ASN SER SER SER VAL ASP LYS LEU SEQRES 13 B 167 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET K A1158 1 HETNAM K POTASSIUM ION FORMUL 3 K K 1+ FORMUL 4 HOH *114(H2 O) HELIX 1 1 ASP A 92 THR A 100 1 9 HELIX 2 2 ASP B 92 THR B 100 1 9 SHEET 1 AA 9 TYR A 43 SER A 51 0 SHEET 2 AA 9 GLY A 80 PHE A 89 -1 O GLY A 80 N SER A 51 SHEET 3 AA 9 LEU A 123 GLY A 130 -1 O HIS A 126 N PHE A 89 SHEET 4 AA 9 TYR A 111 PHE A 117 -1 O LEU A 112 N SER A 129 SHEET 5 AA 9 SER A 102 ASN A 106 -1 O SER A 102 N PHE A 117 SHEET 6 AA 9 ILE A 138 GLN A 146 -1 O GLY A 139 N TYR A 105 SHEET 7 AA 9 THR A 68 GLY A 74 -1 O THR A 68 N GLN A 146 SHEET 8 AA 9 TYR A 55 VAL A 62 -1 O GLN A 56 N SER A 73 SHEET 9 AA 9 TYR A 43 SER A 51 -1 O HIS A 46 N THR A 61 SHEET 1 BA 9 SER B 42 SER B 51 0 SHEET 2 BA 9 GLY B 80 PHE B 89 -1 O GLY B 80 N SER B 51 SHEET 3 BA 9 LEU B 123 GLY B 130 -1 O HIS B 126 N PHE B 89 SHEET 4 BA 9 TYR B 111 PHE B 117 -1 O LEU B 112 N SER B 129 SHEET 5 BA 9 SER B 102 VAL B 108 -1 O SER B 102 N PHE B 117 SHEET 6 BA 9 VAL B 135 GLN B 146 -1 O GLY B 137 N ALA B 107 SHEET 7 BA 9 THR B 68 SER B 77 -1 O THR B 68 N GLN B 146 SHEET 8 BA 9 TYR B 55 VAL B 62 -1 O GLN B 56 N SER B 73 SHEET 9 BA 9 SER B 42 SER B 51 -1 O HIS B 46 N THR B 61 LINK OD1 ASN A 106 K K A1158 1555 1555 2.82 LINK O ASN A 106 K K A1158 1555 1555 2.86 LINK O VAL A 108 K K A1158 1555 1555 2.88 LINK O TYR A 111 K K A1158 1555 1555 2.71 LINK OD1 ASN A 113 K K A1158 1555 1555 2.82 LINK K K A1158 O HOH A2050 1555 1555 3.13 SITE 1 AC1 4 ASN A 106 VAL A 108 TYR A 111 ASN A 113 CRYST1 44.550 44.550 259.670 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003851 0.00000