data_5AF9 # _entry.id 5AF9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5AF9 pdb_00005af9 10.2210/pdb5af9/pdb PDBE EBI-62752 ? ? WWPDB D_1290062752 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-26 2 'Structure model' 1 1 2015-09-23 3 'Structure model' 1 2 2018-03-07 4 'Structure model' 2 0 2019-10-23 5 'Structure model' 2 1 2020-07-29 6 'Structure model' 2 2 2024-01-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Refinement description' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 4 'Structure model' atom_site 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_conn 5 5 'Structure model' chem_comp 6 5 'Structure model' entity 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_entity_nonpoly 9 5 'Structure model' pdbx_struct_conn_angle 10 5 'Structure model' struct_conn 11 5 'Structure model' struct_site 12 5 'Structure model' struct_site_gen 13 6 'Structure model' chem_comp 14 6 'Structure model' chem_comp_atom 15 6 'Structure model' chem_comp_bond 16 6 'Structure model' database_2 17 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 4 'Structure model' '_atom_site.B_iso_or_equiv' 3 4 'Structure model' '_atom_site.Cartn_x' 4 4 'Structure model' '_atom_site.Cartn_y' 5 4 'Structure model' '_atom_site.Cartn_z' 6 4 'Structure model' '_pdbx_database_status.status_code_sf' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 5 'Structure model' '_chem_comp.name' 9 5 'Structure model' '_chem_comp.type' 10 5 'Structure model' '_entity.pdbx_description' 11 5 'Structure model' '_pdbx_entity_nonpoly.name' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_PDB_ins_code' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_PDB_ins_code' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.value' 25 5 'Structure model' '_struct_conn.conn_type_id' 26 5 'Structure model' '_struct_conn.id' 27 5 'Structure model' '_struct_conn.pdbx_dist_value' 28 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 5 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 30 5 'Structure model' '_struct_conn.pdbx_ptnr2_PDB_ins_code' 31 5 'Structure model' '_struct_conn.pdbx_role' 32 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 39 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 40 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 41 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 42 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 43 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 44 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 45 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 46 6 'Structure model' '_chem_comp.pdbx_synonyms' 47 6 'Structure model' '_database_2.pdbx_DOI' 48 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AF9 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-01-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ruehmann, E.' 1 'Heine, A.' 2 'Klebe, G.' 3 # _citation.id primary _citation.title 'Fragments Can Bind Either More Enthalpy or Entropy-Driven: Crystal Structures and Residual Hydration Pattern Suggest Why.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 58 _citation.page_first 6960 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26270568 _citation.pdbx_database_id_DOI 10.1021/ACS.JMEDCHEM.5B00812 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ruehmann, E.' 1 ? primary 'Betz, M.' 2 ? primary 'Heine, A.' 3 ? primary 'Klebe, G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'THROMBIN HEAVY CHAIN' 29651.105 1 3.4.21.5 ? 'THROMBIN HEAVY CHAIN, UNP RESIDUES 364-621' ? 2 polymer syn 'HIRUDIN VARIANT-2' 1548.580 1 ? ? 'UNP RESIDUES 61-72' 'HIRUDIN (54-65) (SULFATED)' 3 polymer nat 'THROMBIN LIGHT CHAIN' 3432.829 1 3.4.21.5 ? 'THROMBIN LIGHT CHAIN, UNP RESIDUES 333-361' ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 6 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 2 ? ? ? ? 7 non-polymer syn '4-methoxy-N-(pyridin-2-yl)benzamide' 228.247 1 ? ? ? ? 8 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 9 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 10 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 11 water nat water 18.015 280 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN ALPHA' 3 'COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN ALPHA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; H ? 2 'polypeptide(L)' no yes 'GDFEEIPEE(TYS)LQ' GDFEEIPEEYLQ I ? 3 'polypeptide(L)' no no EADCGLRPLFEKKSLEDKTERELLESYID EADCGLRPLFEKKSLEDKTERELLESYID L ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 'SODIUM ION' NA 6 'DIMETHYL SULFOXIDE' DMS 7 '4-methoxy-N-(pyridin-2-yl)benzamide' SJR 8 'PHOSPHATE ION' PO4 9 GLYCEROL GOL 10 1,2-ETHANEDIOL EDO 11 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 ALA n 1 8 GLU n 1 9 ILE n 1 10 GLY n 1 11 MET n 1 12 SER n 1 13 PRO n 1 14 TRP n 1 15 GLN n 1 16 VAL n 1 17 MET n 1 18 LEU n 1 19 PHE n 1 20 ARG n 1 21 LYS n 1 22 SER n 1 23 PRO n 1 24 GLN n 1 25 GLU n 1 26 LEU n 1 27 LEU n 1 28 CYS n 1 29 GLY n 1 30 ALA n 1 31 SER n 1 32 LEU n 1 33 ILE n 1 34 SER n 1 35 ASP n 1 36 ARG n 1 37 TRP n 1 38 VAL n 1 39 LEU n 1 40 THR n 1 41 ALA n 1 42 ALA n 1 43 HIS n 1 44 CYS n 1 45 LEU n 1 46 LEU n 1 47 TYR n 1 48 PRO n 1 49 PRO n 1 50 TRP n 1 51 ASP n 1 52 LYS n 1 53 ASN n 1 54 PHE n 1 55 THR n 1 56 GLU n 1 57 ASN n 1 58 ASP n 1 59 LEU n 1 60 LEU n 1 61 VAL n 1 62 ARG n 1 63 ILE n 1 64 GLY n 1 65 LYS n 1 66 HIS n 1 67 SER n 1 68 ARG n 1 69 THR n 1 70 ARG n 1 71 TYR n 1 72 GLU n 1 73 ARG n 1 74 ASN n 1 75 ILE n 1 76 GLU n 1 77 LYS n 1 78 ILE n 1 79 SER n 1 80 MET n 1 81 LEU n 1 82 GLU n 1 83 LYS n 1 84 ILE n 1 85 TYR n 1 86 ILE n 1 87 HIS n 1 88 PRO n 1 89 ARG n 1 90 TYR n 1 91 ASN n 1 92 TRP n 1 93 ARG n 1 94 GLU n 1 95 ASN n 1 96 LEU n 1 97 ASP n 1 98 ARG n 1 99 ASP n 1 100 ILE n 1 101 ALA n 1 102 LEU n 1 103 MET n 1 104 LYS n 1 105 LEU n 1 106 LYS n 1 107 LYS n 1 108 PRO n 1 109 VAL n 1 110 ALA n 1 111 PHE n 1 112 SER n 1 113 ASP n 1 114 TYR n 1 115 ILE n 1 116 HIS n 1 117 PRO n 1 118 VAL n 1 119 CYS n 1 120 LEU n 1 121 PRO n 1 122 ASP n 1 123 ARG n 1 124 GLU n 1 125 THR n 1 126 ALA n 1 127 ALA n 1 128 SER n 1 129 LEU n 1 130 LEU n 1 131 GLN n 1 132 ALA n 1 133 GLY n 1 134 TYR n 1 135 LYS n 1 136 GLY n 1 137 ARG n 1 138 VAL n 1 139 THR n 1 140 GLY n 1 141 TRP n 1 142 GLY n 1 143 ASN n 1 144 LEU n 1 145 LYS n 1 146 GLU n 1 147 THR n 1 148 TRP n 1 149 THR n 1 150 ALA n 1 151 ASN n 1 152 VAL n 1 153 GLY n 1 154 LYS n 1 155 GLY n 1 156 GLN n 1 157 PRO n 1 158 SER n 1 159 VAL n 1 160 LEU n 1 161 GLN n 1 162 VAL n 1 163 VAL n 1 164 ASN n 1 165 LEU n 1 166 PRO n 1 167 ILE n 1 168 VAL n 1 169 GLU n 1 170 ARG n 1 171 PRO n 1 172 VAL n 1 173 CYS n 1 174 LYS n 1 175 ASP n 1 176 SER n 1 177 THR n 1 178 ARG n 1 179 ILE n 1 180 ARG n 1 181 ILE n 1 182 THR n 1 183 ASP n 1 184 ASN n 1 185 MET n 1 186 PHE n 1 187 CYS n 1 188 ALA n 1 189 GLY n 1 190 TYR n 1 191 LYS n 1 192 PRO n 1 193 ASP n 1 194 GLU n 1 195 GLY n 1 196 LYS n 1 197 ARG n 1 198 GLY n 1 199 ASP n 1 200 ALA n 1 201 CYS n 1 202 GLU n 1 203 GLY n 1 204 ASP n 1 205 SER n 1 206 GLY n 1 207 GLY n 1 208 PRO n 1 209 PHE n 1 210 VAL n 1 211 MET n 1 212 LYS n 1 213 SER n 1 214 PRO n 1 215 PHE n 1 216 ASN n 1 217 ASN n 1 218 ARG n 1 219 TRP n 1 220 TYR n 1 221 GLN n 1 222 MET n 1 223 GLY n 1 224 ILE n 1 225 VAL n 1 226 SER n 1 227 TRP n 1 228 GLY n 1 229 GLU n 1 230 GLY n 1 231 CYS n 1 232 ASP n 1 233 ARG n 1 234 ASP n 1 235 GLY n 1 236 LYS n 1 237 TYR n 1 238 GLY n 1 239 PHE n 1 240 TYR n 1 241 THR n 1 242 HIS n 1 243 VAL n 1 244 PHE n 1 245 ARG n 1 246 LEU n 1 247 LYS n 1 248 LYS n 1 249 TRP n 1 250 ILE n 1 251 GLN n 1 252 LYS n 1 253 VAL n 1 254 ILE n 1 255 ASP n 1 256 GLN n 1 257 PHE n 1 258 GLY n 2 1 GLY n 2 2 ASP n 2 3 PHE n 2 4 GLU n 2 5 GLU n 2 6 ILE n 2 7 PRO n 2 8 GLU n 2 9 GLU n 2 10 TYS n 2 11 LEU n 2 12 GLN n 3 1 GLU n 3 2 ALA n 3 3 ASP n 3 4 CYS n 3 5 GLY n 3 6 LEU n 3 7 ARG n 3 8 PRO n 3 9 LEU n 3 10 PHE n 3 11 GLU n 3 12 LYS n 3 13 LYS n 3 14 SER n 3 15 LEU n 3 16 GLU n 3 17 ASP n 3 18 LYS n 3 19 THR n 3 20 GLU n 3 21 ARG n 3 22 GLU n 3 23 LEU n 3 24 LEU n 3 25 GLU n 3 26 SER n 3 27 TYR n 3 28 ILE n 3 29 ASP n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? HUMAN 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'PURIFIED FROM HUMAN BLOOD PLASMA' 3 1 sample ? ? HUMAN 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'PURIFIED FROM HUMAN BLOOD PLASMA' # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HIRUDO MEDICINALIS' _pdbx_entity_src_syn.organism_common_name 'MEDICINAL LEECH' _pdbx_entity_src_syn.ncbi_taxonomy_id 6421 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SJR non-polymer . '4-methoxy-N-(pyridin-2-yl)benzamide' ? 'C13 H12 N2 O2' 228.247 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE H . n A 1 2 VAL 2 17 17 VAL VAL H . n A 1 3 GLU 3 18 18 GLU GLU H . n A 1 4 GLY 4 19 19 GLY GLY H . n A 1 5 SER 5 20 20 SER SER H . n A 1 6 ASP 6 21 21 ASP ASP H . n A 1 7 ALA 7 22 22 ALA ALA H . n A 1 8 GLU 8 23 23 GLU GLU H . n A 1 9 ILE 9 24 24 ILE ILE H . n A 1 10 GLY 10 25 25 GLY GLY H . n A 1 11 MET 11 26 26 MET MET H . n A 1 12 SER 12 27 27 SER SER H . n A 1 13 PRO 13 28 28 PRO PRO H . n A 1 14 TRP 14 29 29 TRP TRP H . n A 1 15 GLN 15 30 30 GLN GLN H . n A 1 16 VAL 16 31 31 VAL VAL H . n A 1 17 MET 17 32 32 MET MET H . n A 1 18 LEU 18 33 33 LEU LEU H . n A 1 19 PHE 19 34 34 PHE PHE H . n A 1 20 ARG 20 35 35 ARG ARG H . n A 1 21 LYS 21 36 36 LYS LYS H . n A 1 22 SER 22 36 36 SER SER H A n A 1 23 PRO 23 37 37 PRO PRO H . n A 1 24 GLN 24 38 38 GLN GLN H . n A 1 25 GLU 25 39 39 GLU GLU H . n A 1 26 LEU 26 40 40 LEU LEU H . n A 1 27 LEU 27 41 41 LEU LEU H . n A 1 28 CYS 28 42 42 CYS CYS H . n A 1 29 GLY 29 43 43 GLY GLY H . n A 1 30 ALA 30 44 44 ALA ALA H . n A 1 31 SER 31 45 45 SER SER H . n A 1 32 LEU 32 46 46 LEU LEU H . n A 1 33 ILE 33 47 47 ILE ILE H . n A 1 34 SER 34 48 48 SER SER H . n A 1 35 ASP 35 49 49 ASP ASP H . n A 1 36 ARG 36 50 50 ARG ARG H . n A 1 37 TRP 37 51 51 TRP TRP H . n A 1 38 VAL 38 52 52 VAL VAL H . n A 1 39 LEU 39 53 53 LEU LEU H . n A 1 40 THR 40 54 54 THR THR H . n A 1 41 ALA 41 55 55 ALA ALA H . n A 1 42 ALA 42 56 56 ALA ALA H . n A 1 43 HIS 43 57 57 HIS HIS H . n A 1 44 CYS 44 58 58 CYS CYS H . n A 1 45 LEU 45 59 59 LEU LEU H . n A 1 46 LEU 46 60 60 LEU LEU H . n A 1 47 TYR 47 60 60 TYR TYR H A n A 1 48 PRO 48 60 60 PRO PRO H B n A 1 49 PRO 49 60 60 PRO PRO H C n A 1 50 TRP 50 60 60 TRP TRP H D n A 1 51 ASP 51 60 60 ASP ASP H E n A 1 52 LYS 52 60 60 LYS LYS H F n A 1 53 ASN 53 60 60 ASN ASN H G n A 1 54 PHE 54 60 60 PHE PHE H H n A 1 55 THR 55 60 60 THR THR H I n A 1 56 GLU 56 61 61 GLU GLU H . n A 1 57 ASN 57 62 62 ASN ASN H . n A 1 58 ASP 58 63 63 ASP ASP H . n A 1 59 LEU 59 64 64 LEU LEU H . n A 1 60 LEU 60 65 65 LEU LEU H . n A 1 61 VAL 61 66 66 VAL VAL H . n A 1 62 ARG 62 67 67 ARG ARG H . n A 1 63 ILE 63 68 68 ILE ILE H . n A 1 64 GLY 64 69 69 GLY GLY H . n A 1 65 LYS 65 70 70 LYS LYS H . n A 1 66 HIS 66 71 71 HIS HIS H . n A 1 67 SER 67 72 72 SER SER H . n A 1 68 ARG 68 73 73 ARG ARG H . n A 1 69 THR 69 74 74 THR THR H . n A 1 70 ARG 70 75 75 ARG ARG H . n A 1 71 TYR 71 76 76 TYR TYR H . n A 1 72 GLU 72 77 77 GLU GLU H . n A 1 73 ARG 73 77 77 ARG ARG H A n A 1 74 ASN 74 78 78 ASN ASN H . n A 1 75 ILE 75 79 79 ILE ILE H . n A 1 76 GLU 76 80 80 GLU GLU H . n A 1 77 LYS 77 81 81 LYS LYS H . n A 1 78 ILE 78 82 82 ILE ILE H . n A 1 79 SER 79 83 83 SER SER H . n A 1 80 MET 80 84 84 MET MET H . n A 1 81 LEU 81 85 85 LEU LEU H . n A 1 82 GLU 82 86 86 GLU GLU H . n A 1 83 LYS 83 87 87 LYS LYS H . n A 1 84 ILE 84 88 88 ILE ILE H . n A 1 85 TYR 85 89 89 TYR TYR H . n A 1 86 ILE 86 90 90 ILE ILE H . n A 1 87 HIS 87 91 91 HIS HIS H . n A 1 88 PRO 88 92 92 PRO PRO H . n A 1 89 ARG 89 93 93 ARG ARG H . n A 1 90 TYR 90 94 94 TYR TYR H . n A 1 91 ASN 91 95 95 ASN ASN H . n A 1 92 TRP 92 96 96 TRP TRP H . n A 1 93 ARG 93 97 97 ARG ARG H . n A 1 94 GLU 94 97 97 GLU GLU H A n A 1 95 ASN 95 98 98 ASN ASN H . n A 1 96 LEU 96 99 99 LEU LEU H . n A 1 97 ASP 97 100 100 ASP ASP H . n A 1 98 ARG 98 101 101 ARG ARG H . n A 1 99 ASP 99 102 102 ASP ASP H . n A 1 100 ILE 100 103 103 ILE ILE H . n A 1 101 ALA 101 104 104 ALA ALA H . n A 1 102 LEU 102 105 105 LEU LEU H . n A 1 103 MET 103 106 106 MET MET H . n A 1 104 LYS 104 107 107 LYS LYS H . n A 1 105 LEU 105 108 108 LEU LEU H . n A 1 106 LYS 106 109 109 LYS LYS H . n A 1 107 LYS 107 110 110 LYS LYS H . n A 1 108 PRO 108 111 111 PRO PRO H . n A 1 109 VAL 109 112 112 VAL VAL H . n A 1 110 ALA 110 113 113 ALA ALA H . n A 1 111 PHE 111 114 114 PHE PHE H . n A 1 112 SER 112 115 115 SER SER H . n A 1 113 ASP 113 116 116 ASP ASP H . n A 1 114 TYR 114 117 117 TYR TYR H . n A 1 115 ILE 115 118 118 ILE ILE H . n A 1 116 HIS 116 119 119 HIS HIS H . n A 1 117 PRO 117 120 120 PRO PRO H . n A 1 118 VAL 118 121 121 VAL VAL H . n A 1 119 CYS 119 122 122 CYS CYS H . n A 1 120 LEU 120 123 123 LEU LEU H . n A 1 121 PRO 121 124 124 PRO PRO H . n A 1 122 ASP 122 125 125 ASP ASP H . n A 1 123 ARG 123 126 126 ARG ARG H . n A 1 124 GLU 124 127 127 GLU GLU H . n A 1 125 THR 125 128 128 THR THR H . n A 1 126 ALA 126 129 129 ALA ALA H . n A 1 127 ALA 127 129 129 ALA ALA H A n A 1 128 SER 128 129 129 SER SER H B n A 1 129 LEU 129 129 129 LEU LEU H C n A 1 130 LEU 130 130 130 LEU LEU H . n A 1 131 GLN 131 131 131 GLN GLN H . n A 1 132 ALA 132 132 132 ALA ALA H . n A 1 133 GLY 133 133 133 GLY GLY H . n A 1 134 TYR 134 134 134 TYR TYR H . n A 1 135 LYS 135 135 135 LYS LYS H . n A 1 136 GLY 136 136 136 GLY GLY H . n A 1 137 ARG 137 137 137 ARG ARG H . n A 1 138 VAL 138 138 138 VAL VAL H . n A 1 139 THR 139 139 139 THR THR H . n A 1 140 GLY 140 140 140 GLY GLY H . n A 1 141 TRP 141 141 141 TRP TRP H . n A 1 142 GLY 142 142 142 GLY GLY H . n A 1 143 ASN 143 143 143 ASN ASN H . n A 1 144 LEU 144 144 144 LEU LEU H . n A 1 145 LYS 145 145 145 LYS LYS H . n A 1 146 GLU 146 146 146 GLU GLU H . n A 1 147 THR 147 147 147 THR THR H . n A 1 148 TRP 148 147 ? ? ? H A n A 1 149 THR 149 147 ? ? ? H B n A 1 150 ALA 150 147 ? ? ? H C n A 1 151 ASN 151 147 ? ? ? H D n A 1 152 VAL 152 147 ? ? ? H E n A 1 153 GLY 153 148 ? ? ? H . n A 1 154 LYS 154 149 ? ? ? H . n A 1 155 GLY 155 150 150 GLY GLY H . n A 1 156 GLN 156 151 151 GLN GLN H . n A 1 157 PRO 157 152 152 PRO PRO H . n A 1 158 SER 158 153 153 SER SER H . n A 1 159 VAL 159 154 154 VAL VAL H . n A 1 160 LEU 160 155 155 LEU LEU H . n A 1 161 GLN 161 156 156 GLN GLN H . n A 1 162 VAL 162 157 157 VAL VAL H . n A 1 163 VAL 163 158 158 VAL VAL H . n A 1 164 ASN 164 159 159 ASN ASN H . n A 1 165 LEU 165 160 160 LEU LEU H . n A 1 166 PRO 166 161 161 PRO PRO H . n A 1 167 ILE 167 162 162 ILE ILE H . n A 1 168 VAL 168 163 163 VAL VAL H . n A 1 169 GLU 169 164 164 GLU GLU H . n A 1 170 ARG 170 165 165 ARG ARG H . n A 1 171 PRO 171 166 166 PRO PRO H . n A 1 172 VAL 172 167 167 VAL VAL H . n A 1 173 CYS 173 168 168 CYS CYS H . n A 1 174 LYS 174 169 169 LYS LYS H . n A 1 175 ASP 175 170 170 ASP ASP H . n A 1 176 SER 176 171 171 SER SER H . n A 1 177 THR 177 172 172 THR THR H . n A 1 178 ARG 178 173 173 ARG ARG H . n A 1 179 ILE 179 174 174 ILE ILE H . n A 1 180 ARG 180 175 175 ARG ARG H . n A 1 181 ILE 181 176 176 ILE ILE H . n A 1 182 THR 182 177 177 THR THR H . n A 1 183 ASP 183 178 178 ASP ASP H . n A 1 184 ASN 184 179 179 ASN ASN H . n A 1 185 MET 185 180 180 MET MET H . n A 1 186 PHE 186 181 181 PHE PHE H . n A 1 187 CYS 187 182 182 CYS CYS H . n A 1 188 ALA 188 183 183 ALA ALA H . n A 1 189 GLY 189 184 184 GLY GLY H . n A 1 190 TYR 190 184 184 TYR TYR H A n A 1 191 LYS 191 185 185 LYS LYS H . n A 1 192 PRO 192 186 186 PRO PRO H . n A 1 193 ASP 193 186 186 ASP ASP H A n A 1 194 GLU 194 186 186 GLU GLU H B n A 1 195 GLY 195 186 186 GLY GLY H C n A 1 196 LYS 196 186 186 LYS LYS H D n A 1 197 ARG 197 187 187 ARG ARG H . n A 1 198 GLY 198 188 188 GLY GLY H . n A 1 199 ASP 199 189 189 ASP ASP H . n A 1 200 ALA 200 190 190 ALA ALA H . n A 1 201 CYS 201 191 191 CYS CYS H . n A 1 202 GLU 202 192 192 GLU GLU H . n A 1 203 GLY 203 193 193 GLY GLY H . n A 1 204 ASP 204 194 194 ASP ASP H . n A 1 205 SER 205 195 195 SER SER H . n A 1 206 GLY 206 196 196 GLY GLY H . n A 1 207 GLY 207 197 197 GLY GLY H . n A 1 208 PRO 208 198 198 PRO PRO H . n A 1 209 PHE 209 199 199 PHE PHE H . n A 1 210 VAL 210 200 200 VAL VAL H . n A 1 211 MET 211 201 201 MET MET H . n A 1 212 LYS 212 202 202 LYS LYS H . n A 1 213 SER 213 203 203 SER SER H . n A 1 214 PRO 214 204 204 PRO PRO H . n A 1 215 PHE 215 204 204 PHE PHE H A n A 1 216 ASN 216 204 204 ASN ASN H B n A 1 217 ASN 217 205 205 ASN ASN H . n A 1 218 ARG 218 206 206 ARG ARG H . n A 1 219 TRP 219 207 207 TRP TRP H . n A 1 220 TYR 220 208 208 TYR TYR H . n A 1 221 GLN 221 209 209 GLN GLN H . n A 1 222 MET 222 210 210 MET MET H . n A 1 223 GLY 223 211 211 GLY GLY H . n A 1 224 ILE 224 212 212 ILE ILE H . n A 1 225 VAL 225 213 213 VAL VAL H . n A 1 226 SER 226 214 214 SER SER H . n A 1 227 TRP 227 215 215 TRP TRP H . n A 1 228 GLY 228 216 216 GLY GLY H . n A 1 229 GLU 229 217 217 GLU GLU H . n A 1 230 GLY 230 219 219 GLY GLY H . n A 1 231 CYS 231 220 220 CYS CYS H . n A 1 232 ASP 232 221 221 ASP ASP H . n A 1 233 ARG 233 221 221 ARG ARG H A n A 1 234 ASP 234 222 222 ASP ASP H . n A 1 235 GLY 235 223 223 GLY GLY H . n A 1 236 LYS 236 224 224 LYS LYS H . n A 1 237 TYR 237 225 225 TYR TYR H . n A 1 238 GLY 238 226 226 GLY GLY H . n A 1 239 PHE 239 227 227 PHE PHE H . n A 1 240 TYR 240 228 228 TYR TYR H . n A 1 241 THR 241 229 229 THR THR H . n A 1 242 HIS 242 230 230 HIS HIS H . n A 1 243 VAL 243 231 231 VAL VAL H . n A 1 244 PHE 244 232 232 PHE PHE H . n A 1 245 ARG 245 233 233 ARG ARG H . n A 1 246 LEU 246 234 234 LEU LEU H . n A 1 247 LYS 247 235 235 LYS LYS H . n A 1 248 LYS 248 236 236 LYS LYS H . n A 1 249 TRP 249 237 237 TRP TRP H . n A 1 250 ILE 250 238 238 ILE ILE H . n A 1 251 GLN 251 239 239 GLN GLN H . n A 1 252 LYS 252 240 240 LYS LYS H . n A 1 253 VAL 253 241 241 VAL VAL H . n A 1 254 ILE 254 242 242 ILE ILE H . n A 1 255 ASP 255 243 243 ASP ASP H . n A 1 256 GLN 256 244 244 GLN GLN H . n A 1 257 PHE 257 245 245 PHE PHE H . n A 1 258 GLY 258 246 ? ? ? H . n B 2 1 GLY 1 517 ? ? ? I . n B 2 2 ASP 2 518 518 ASP ASP I . n B 2 3 PHE 3 519 519 PHE PHE I . n B 2 4 GLU 4 520 520 GLU GLU I . n B 2 5 GLU 5 521 521 GLU GLU I . n B 2 6 ILE 6 522 522 ILE ILE I . n B 2 7 PRO 7 523 523 PRO PRO I . n B 2 8 GLU 8 524 524 GLU GLU I . n B 2 9 GLU 9 525 525 GLU GLU I . n B 2 10 TYS 10 526 526 TYS TYS I . n B 2 11 LEU 11 527 527 LEU LEU I . n B 2 12 GLN 12 528 528 GLN GLN I . n C 3 1 GLU 1 1 1 GLU GLU L C n C 3 2 ALA 2 1 1 ALA ALA L B n C 3 3 ASP 3 1 1 ASP ASP L A n C 3 4 CYS 4 1 1 CYS CYS L . n C 3 5 GLY 5 2 2 GLY GLY L . n C 3 6 LEU 6 3 3 LEU LEU L . n C 3 7 ARG 7 4 4 ARG ARG L . n C 3 8 PRO 8 5 5 PRO PRO L . n C 3 9 LEU 9 6 6 LEU LEU L . n C 3 10 PHE 10 7 7 PHE PHE L . n C 3 11 GLU 11 8 8 GLU GLU L . n C 3 12 LYS 12 9 9 LYS LYS L . n C 3 13 LYS 13 10 10 LYS LYS L . n C 3 14 SER 14 11 11 SER SER L . n C 3 15 LEU 15 12 12 LEU LEU L . n C 3 16 GLU 16 13 13 GLU GLU L . n C 3 17 ASP 17 14 14 ASP ASP L . n C 3 18 LYS 18 14 14 LYS LYS L A n C 3 19 THR 19 14 14 THR THR L B n C 3 20 GLU 20 14 14 GLU GLU L C n C 3 21 ARG 21 14 14 ARG ARG L D n C 3 22 GLU 22 14 14 GLU GLU L E n C 3 23 LEU 23 14 14 LEU LEU L F n C 3 24 LEU 24 14 14 LEU LEU L G n C 3 25 GLU 25 14 14 GLU GLU L H n C 3 26 SER 26 14 14 SER SER L I n C 3 27 TYR 27 14 14 TYR TYR L J n C 3 28 ILE 28 14 14 ILE ILE L K n C 3 29 ASP 29 15 ? ? ? L . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 1060 1060 NAG NAG H . E 5 NA 1 1246 1246 NA NA H . F 5 NA 1 1247 1247 NA NA H . G 6 DMS 1 1248 1248 DMS DMS H . H 6 DMS 1 1249 1249 DMS DMS H . I 7 SJR 1 1250 1250 SJR SJR H . J 8 PO4 1 1251 1251 PO4 PO4 H . K 9 GOL 1 1252 1252 GOL GOL H . L 9 GOL 1 1253 1253 GOL GOL H . M 9 GOL 1 1254 1254 GOL GOL H . N 10 EDO 1 1255 1255 EDO EDO H . O 11 HOH 1 2001 2001 HOH HOH H . O 11 HOH 2 2002 2002 HOH HOH H . O 11 HOH 3 2003 2003 HOH HOH H . O 11 HOH 4 2004 2004 HOH HOH H . O 11 HOH 5 2005 2005 HOH HOH H . O 11 HOH 6 2006 2006 HOH HOH H . O 11 HOH 7 2007 2007 HOH HOH H . O 11 HOH 8 2008 2008 HOH HOH H . O 11 HOH 9 2009 2009 HOH HOH H . O 11 HOH 10 2010 2010 HOH HOH H . O 11 HOH 11 2011 2011 HOH HOH H . O 11 HOH 12 2012 2012 HOH HOH H . O 11 HOH 13 2013 2013 HOH HOH H . O 11 HOH 14 2014 2014 HOH HOH H . O 11 HOH 15 2015 2015 HOH HOH H . O 11 HOH 16 2016 2016 HOH HOH H . O 11 HOH 17 2017 2017 HOH HOH H . O 11 HOH 18 2018 2018 HOH HOH H . O 11 HOH 19 2019 2019 HOH HOH H . O 11 HOH 20 2020 2020 HOH HOH H . O 11 HOH 21 2021 2021 HOH HOH H . O 11 HOH 22 2022 2022 HOH HOH H . O 11 HOH 23 2023 2023 HOH HOH H . O 11 HOH 24 2024 2024 HOH HOH H . O 11 HOH 25 2025 2025 HOH HOH H . O 11 HOH 26 2026 2026 HOH HOH H . O 11 HOH 27 2027 2027 HOH HOH H . O 11 HOH 28 2028 2028 HOH HOH H . O 11 HOH 29 2029 2029 HOH HOH H . O 11 HOH 30 2030 2030 HOH HOH H . O 11 HOH 31 2031 2031 HOH HOH H . O 11 HOH 32 2032 2032 HOH HOH H . O 11 HOH 33 2033 2033 HOH HOH H . O 11 HOH 34 2034 2034 HOH HOH H . O 11 HOH 35 2035 2035 HOH HOH H . O 11 HOH 36 2036 2036 HOH HOH H . O 11 HOH 37 2037 2037 HOH HOH H . O 11 HOH 38 2038 2038 HOH HOH H . O 11 HOH 39 2039 2039 HOH HOH H . O 11 HOH 40 2040 2040 HOH HOH H . O 11 HOH 41 2041 2041 HOH HOH H . O 11 HOH 42 2042 2042 HOH HOH H . O 11 HOH 43 2043 2043 HOH HOH H . O 11 HOH 44 2044 2044 HOH HOH H . O 11 HOH 45 2045 2045 HOH HOH H . O 11 HOH 46 2046 2046 HOH HOH H . O 11 HOH 47 2047 2047 HOH HOH H . O 11 HOH 48 2048 2048 HOH HOH H . O 11 HOH 49 2049 2049 HOH HOH H . O 11 HOH 50 2050 2050 HOH HOH H . O 11 HOH 51 2051 2051 HOH HOH H . O 11 HOH 52 2052 2052 HOH HOH H . O 11 HOH 53 2053 2053 HOH HOH H . O 11 HOH 54 2054 2054 HOH HOH H . O 11 HOH 55 2055 2055 HOH HOH H . O 11 HOH 56 2056 2056 HOH HOH H . O 11 HOH 57 2057 2057 HOH HOH H . O 11 HOH 58 2058 2058 HOH HOH H . O 11 HOH 59 2059 2059 HOH HOH H . O 11 HOH 60 2060 2060 HOH HOH H . O 11 HOH 61 2061 2061 HOH HOH H . O 11 HOH 62 2062 2062 HOH HOH H . O 11 HOH 63 2063 2063 HOH HOH H . O 11 HOH 64 2064 2064 HOH HOH H . O 11 HOH 65 2065 2065 HOH HOH H . O 11 HOH 66 2066 2066 HOH HOH H . O 11 HOH 67 2067 2067 HOH HOH H . O 11 HOH 68 2068 2068 HOH HOH H . O 11 HOH 69 2069 2069 HOH HOH H . O 11 HOH 70 2070 2070 HOH HOH H . O 11 HOH 71 2071 2071 HOH HOH H . O 11 HOH 72 2072 2072 HOH HOH H . O 11 HOH 73 2073 2073 HOH HOH H . O 11 HOH 74 2074 2074 HOH HOH H . O 11 HOH 75 2075 2075 HOH HOH H . O 11 HOH 76 2076 2076 HOH HOH H . O 11 HOH 77 2077 2077 HOH HOH H . O 11 HOH 78 2078 2078 HOH HOH H . O 11 HOH 79 2079 2079 HOH HOH H . O 11 HOH 80 2080 2080 HOH HOH H . O 11 HOH 81 2081 2081 HOH HOH H . O 11 HOH 82 2082 2082 HOH HOH H . O 11 HOH 83 2083 2083 HOH HOH H . O 11 HOH 84 2084 2084 HOH HOH H . O 11 HOH 85 2085 2085 HOH HOH H . O 11 HOH 86 2086 2086 HOH HOH H . O 11 HOH 87 2087 2087 HOH HOH H . O 11 HOH 88 2088 2088 HOH HOH H . O 11 HOH 89 2089 2089 HOH HOH H . O 11 HOH 90 2090 2090 HOH HOH H . O 11 HOH 91 2091 2091 HOH HOH H . O 11 HOH 92 2093 2093 HOH HOH H . O 11 HOH 93 2094 2094 HOH HOH H . O 11 HOH 94 2095 2095 HOH HOH H . O 11 HOH 95 2096 2096 HOH HOH H . O 11 HOH 96 2097 2097 HOH HOH H . O 11 HOH 97 2098 2098 HOH HOH H . O 11 HOH 98 2099 2099 HOH HOH H . O 11 HOH 99 2100 2100 HOH HOH H . O 11 HOH 100 2101 2101 HOH HOH H . O 11 HOH 101 2102 2102 HOH HOH H . O 11 HOH 102 2103 2103 HOH HOH H . O 11 HOH 103 2104 2104 HOH HOH H . O 11 HOH 104 2105 2105 HOH HOH H . O 11 HOH 105 2106 2106 HOH HOH H . O 11 HOH 106 2107 2107 HOH HOH H . O 11 HOH 107 2108 2108 HOH HOH H . O 11 HOH 108 2109 2109 HOH HOH H . O 11 HOH 109 2110 2110 HOH HOH H . O 11 HOH 110 2111 2111 HOH HOH H . O 11 HOH 111 2112 2112 HOH HOH H . O 11 HOH 112 2113 2113 HOH HOH H . O 11 HOH 113 2114 2114 HOH HOH H . O 11 HOH 114 2115 2115 HOH HOH H . O 11 HOH 115 2116 2116 HOH HOH H . O 11 HOH 116 2117 2117 HOH HOH H . O 11 HOH 117 2118 2118 HOH HOH H . O 11 HOH 118 2119 2119 HOH HOH H . O 11 HOH 119 2120 2120 HOH HOH H . O 11 HOH 120 2121 2121 HOH HOH H . O 11 HOH 121 2122 2122 HOH HOH H . O 11 HOH 122 2123 2123 HOH HOH H . O 11 HOH 123 2124 2124 HOH HOH H . O 11 HOH 124 2125 2125 HOH HOH H . O 11 HOH 125 2126 2126 HOH HOH H . O 11 HOH 126 2127 2127 HOH HOH H . O 11 HOH 127 2128 2128 HOH HOH H . O 11 HOH 128 2129 2129 HOH HOH H . O 11 HOH 129 2130 2130 HOH HOH H . O 11 HOH 130 2131 2131 HOH HOH H . O 11 HOH 131 2132 2132 HOH HOH H . O 11 HOH 132 2133 2133 HOH HOH H . O 11 HOH 133 2134 2134 HOH HOH H . O 11 HOH 134 2135 2135 HOH HOH H . O 11 HOH 135 2136 2136 HOH HOH H . O 11 HOH 136 2137 2137 HOH HOH H . O 11 HOH 137 2138 2138 HOH HOH H . O 11 HOH 138 2139 2139 HOH HOH H . O 11 HOH 139 2140 2140 HOH HOH H . O 11 HOH 140 2141 2141 HOH HOH H . O 11 HOH 141 2142 2142 HOH HOH H . O 11 HOH 142 2143 2143 HOH HOH H . O 11 HOH 143 2144 2144 HOH HOH H . O 11 HOH 144 2145 2145 HOH HOH H . O 11 HOH 145 2146 2146 HOH HOH H . O 11 HOH 146 2147 2147 HOH HOH H . O 11 HOH 147 2148 2148 HOH HOH H . O 11 HOH 148 2149 2149 HOH HOH H . O 11 HOH 149 2150 2150 HOH HOH H . O 11 HOH 150 2151 2151 HOH HOH H . O 11 HOH 151 2152 2152 HOH HOH H . O 11 HOH 152 2153 2153 HOH HOH H . O 11 HOH 153 2154 2154 HOH HOH H . O 11 HOH 154 2155 2155 HOH HOH H . O 11 HOH 155 2156 2156 HOH HOH H . O 11 HOH 156 2157 2157 HOH HOH H . O 11 HOH 157 2158 2158 HOH HOH H . O 11 HOH 158 2159 2159 HOH HOH H . O 11 HOH 159 2160 2160 HOH HOH H . O 11 HOH 160 2161 2161 HOH HOH H . O 11 HOH 161 2162 2162 HOH HOH H . O 11 HOH 162 2163 2163 HOH HOH H . O 11 HOH 163 2164 2164 HOH HOH H . O 11 HOH 164 2165 2165 HOH HOH H . O 11 HOH 165 2166 2166 HOH HOH H . O 11 HOH 166 2167 2167 HOH HOH H . O 11 HOH 167 2168 2168 HOH HOH H . O 11 HOH 168 2169 2169 HOH HOH H . O 11 HOH 169 2170 2170 HOH HOH H . O 11 HOH 170 2171 2171 HOH HOH H . O 11 HOH 171 2172 2172 HOH HOH H . O 11 HOH 172 2173 2173 HOH HOH H . O 11 HOH 173 2174 2174 HOH HOH H . O 11 HOH 174 2175 2175 HOH HOH H . O 11 HOH 175 2176 2176 HOH HOH H . O 11 HOH 176 2177 2177 HOH HOH H . O 11 HOH 177 2178 2178 HOH HOH H . O 11 HOH 178 2179 2179 HOH HOH H . O 11 HOH 179 2180 2180 HOH HOH H . O 11 HOH 180 2181 2181 HOH HOH H . O 11 HOH 181 2182 2182 HOH HOH H . O 11 HOH 182 2183 2183 HOH HOH H . O 11 HOH 183 2184 2184 HOH HOH H . O 11 HOH 184 2185 2185 HOH HOH H . O 11 HOH 185 2186 2186 HOH HOH H . O 11 HOH 186 2187 2187 HOH HOH H . O 11 HOH 187 2188 2188 HOH HOH H . O 11 HOH 188 2189 2189 HOH HOH H . O 11 HOH 189 2190 2190 HOH HOH H . O 11 HOH 190 2191 2191 HOH HOH H . O 11 HOH 191 2192 2192 HOH HOH H . O 11 HOH 192 2193 2193 HOH HOH H . O 11 HOH 193 2194 2194 HOH HOH H . O 11 HOH 194 2195 2195 HOH HOH H . O 11 HOH 195 2196 2196 HOH HOH H . O 11 HOH 196 2197 2197 HOH HOH H . O 11 HOH 197 2198 2198 HOH HOH H . O 11 HOH 198 2199 2199 HOH HOH H . O 11 HOH 199 2200 2200 HOH HOH H . O 11 HOH 200 2201 2201 HOH HOH H . O 11 HOH 201 2202 2202 HOH HOH H . O 11 HOH 202 2203 2203 HOH HOH H . O 11 HOH 203 2204 2204 HOH HOH H . O 11 HOH 204 2205 2205 HOH HOH H . O 11 HOH 205 2206 2206 HOH HOH H . O 11 HOH 206 2207 2207 HOH HOH H . O 11 HOH 207 2208 2208 HOH HOH H . O 11 HOH 208 2209 2209 HOH HOH H . O 11 HOH 209 2210 2210 HOH HOH H . O 11 HOH 210 2211 2211 HOH HOH H . O 11 HOH 211 2212 2212 HOH HOH H . O 11 HOH 212 2213 2213 HOH HOH H . O 11 HOH 213 2214 2214 HOH HOH H . O 11 HOH 214 2215 2215 HOH HOH H . O 11 HOH 215 2216 2216 HOH HOH H . O 11 HOH 216 2217 2217 HOH HOH H . O 11 HOH 217 2218 2218 HOH HOH H . O 11 HOH 218 2219 2219 HOH HOH H . O 11 HOH 219 2221 2221 HOH HOH H . O 11 HOH 220 2222 2222 HOH HOH H . O 11 HOH 221 2223 2223 HOH HOH H . O 11 HOH 222 2224 2224 HOH HOH H . O 11 HOH 223 2225 2225 HOH HOH H . O 11 HOH 224 2226 2226 HOH HOH H . O 11 HOH 225 2227 2227 HOH HOH H . O 11 HOH 226 2228 2228 HOH HOH H . O 11 HOH 227 2229 2229 HOH HOH H . O 11 HOH 228 2230 2230 HOH HOH H . O 11 HOH 229 2231 2231 HOH HOH H . O 11 HOH 230 2232 2232 HOH HOH H . O 11 HOH 231 2233 2233 HOH HOH H . O 11 HOH 232 2234 2234 HOH HOH H . O 11 HOH 233 2235 2235 HOH HOH H . O 11 HOH 234 2236 2236 HOH HOH H . O 11 HOH 235 2237 2237 HOH HOH H . O 11 HOH 236 2238 2238 HOH HOH H . O 11 HOH 237 2239 2239 HOH HOH H . O 11 HOH 238 2240 2240 HOH HOH H . O 11 HOH 239 2241 2241 HOH HOH H . O 11 HOH 240 2242 2242 HOH HOH H . O 11 HOH 241 2243 2243 HOH HOH H . O 11 HOH 242 2244 2244 HOH HOH H . O 11 HOH 243 2245 2245 HOH HOH H . O 11 HOH 244 2247 2247 HOH HOH H . O 11 HOH 245 2248 2248 HOH HOH H . O 11 HOH 246 2249 2249 HOH HOH H . P 11 HOH 1 3028 3028 HOH HOH H . Q 11 HOH 1 2001 2001 HOH HOH I . Q 11 HOH 2 2002 2002 HOH HOH I . Q 11 HOH 3 2003 2003 HOH HOH I . Q 11 HOH 4 2004 2004 HOH HOH I . Q 11 HOH 5 2005 2005 HOH HOH I . Q 11 HOH 6 2006 2006 HOH HOH I . R 11 HOH 1 2001 2001 HOH HOH L . R 11 HOH 2 2002 2002 HOH HOH L . R 11 HOH 3 2003 2003 HOH HOH L . R 11 HOH 4 2004 2004 HOH HOH L . R 11 HOH 5 2005 2005 HOH HOH L . R 11 HOH 6 2006 2006 HOH HOH L . R 11 HOH 7 2007 2007 HOH HOH L . R 11 HOH 8 2008 2008 HOH HOH L . R 11 HOH 9 2009 2009 HOH HOH L . R 11 HOH 10 2010 2010 HOH HOH L . R 11 HOH 11 2011 2011 HOH HOH L . R 11 HOH 12 2012 2012 HOH HOH L . R 11 HOH 13 2013 2013 HOH HOH L . R 11 HOH 14 2014 2014 HOH HOH L . R 11 HOH 15 2015 2015 HOH HOH L . R 11 HOH 16 2016 2016 HOH HOH L . R 11 HOH 17 2017 2017 HOH HOH L . R 11 HOH 18 2018 2018 HOH HOH L . R 11 HOH 19 2019 2019 HOH HOH L . R 11 HOH 20 2020 2020 HOH HOH L . R 11 HOH 21 2021 2021 HOH HOH L . R 11 HOH 22 2022 2022 HOH HOH L . R 11 HOH 23 2023 2023 HOH HOH L . R 11 HOH 24 2024 2024 HOH HOH L . R 11 HOH 25 2025 2025 HOH HOH L . R 11 HOH 26 2026 2026 HOH HOH L . R 11 HOH 27 2027 2027 HOH HOH L . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H LYS 107 ? NZ ? A LYS 104 NZ 2 1 Y 1 H LYS 110 ? CE ? A LYS 107 CE 3 1 Y 1 H LYS 110 ? NZ ? A LYS 107 NZ 4 1 Y 1 H LYS 169 ? CD ? A LYS 174 CD 5 1 Y 1 H LYS 169 ? CE ? A LYS 174 CE 6 1 Y 1 H LYS 169 ? NZ ? A LYS 174 NZ 7 1 Y 1 H ASP 186 A CG ? A ASP 193 CG 8 1 Y 1 H ASP 186 A OD1 ? A ASP 193 OD1 9 1 Y 1 H ASP 186 A OD2 ? A ASP 193 OD2 10 1 Y 1 H LYS 186 D CE ? A LYS 196 CE 11 1 Y 1 H LYS 186 D NZ ? A LYS 196 NZ 12 1 Y 1 H LYS 236 ? CD ? A LYS 248 CD 13 1 Y 1 H LYS 236 ? CE ? A LYS 248 CE 14 1 Y 1 H LYS 236 ? NZ ? A LYS 248 NZ 15 1 Y 1 H LYS 240 ? CG ? A LYS 252 CG 16 1 Y 1 H LYS 240 ? CD ? A LYS 252 CD 17 1 Y 1 H LYS 240 ? CE ? A LYS 252 CE 18 1 Y 1 H LYS 240 ? NZ ? A LYS 252 NZ 19 1 Y 1 H GLN 244 ? CD ? A GLN 256 CD 20 1 Y 1 H GLN 244 ? OE1 ? A GLN 256 OE1 21 1 Y 1 H GLN 244 ? NE2 ? A GLN 256 NE2 22 1 Y 1 I ASP 518 ? CG ? B ASP 2 CG 23 1 Y 1 I ASP 518 ? OD1 ? B ASP 2 OD1 24 1 Y 1 I ASP 518 ? OD2 ? B ASP 2 OD2 25 1 Y 1 I GLU 521 ? CG ? B GLU 5 CG 26 1 Y 1 I GLU 521 ? CD ? B GLU 5 CD 27 1 Y 1 I GLU 521 ? OE1 ? B GLU 5 OE1 28 1 Y 1 I GLU 521 ? OE2 ? B GLU 5 OE2 29 1 Y 1 I GLU 524 ? CG ? B GLU 8 CG 30 1 Y 1 I GLU 524 ? CD ? B GLU 8 CD 31 1 Y 1 I GLU 524 ? OE1 ? B GLU 8 OE1 32 1 Y 1 I GLU 524 ? OE2 ? B GLU 8 OE2 33 1 Y 1 I GLN 528 ? CD ? B GLN 12 CD 34 1 Y 1 I GLN 528 ? OE1 ? B GLN 12 OE1 35 1 Y 1 I GLN 528 ? NE2 ? B GLN 12 NE2 36 1 Y 1 L GLU 1 C CG ? C GLU 1 CG 37 1 Y 1 L GLU 1 C CD ? C GLU 1 CD 38 1 Y 1 L GLU 1 C OE1 ? C GLU 1 OE1 39 1 Y 1 L GLU 1 C OE2 ? C GLU 1 OE2 40 1 Y 1 L LYS 9 ? CD ? C LYS 12 CD 41 1 Y 1 L LYS 9 ? CE ? C LYS 12 CE 42 1 Y 1 L LYS 9 ? NZ ? C LYS 12 NZ 43 1 Y 1 L LYS 14 A CE ? C LYS 18 CE 44 1 Y 1 L LYS 14 A NZ ? C LYS 18 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 PHASER phasing . ? 4 # _cell.entry_id 5AF9 _cell.length_a 70.034 _cell.length_b 71.246 _cell.length_c 72.138 _cell.angle_alpha 90.00 _cell.angle_beta 100.38 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AF9 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 5AF9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 49.97 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'SEE MATERIALS AND METHODS SECTION OF PUBLICATION, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-11-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.976 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' _diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)' _diffrn_source.pdbx_wavelength 0.976 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AF9 _reflns.observed_criterion_sigma_I 2.2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 70.96 _reflns.d_resolution_high 1.18 _reflns.number_obs 108698 _reflns.number_all ? _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.63 _reflns.B_iso_Wilson_estimate 13.35 _reflns.pdbx_redundancy 4.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.18 _reflns_shell.d_res_low 1.22 _reflns_shell.percent_possible_all 86.1 _reflns_shell.Rmerge_I_obs 0.56 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.18 _reflns_shell.pdbx_redundancy 4.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AF9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 497434 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 70.96 _refine.ls_d_res_high 1.18 _refine.ls_percent_reflns_obs 95.1 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1214 _refine.ls_R_factor_R_free 0.1372 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 5435 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.60 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1H8D' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2315 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 68 _refine_hist.number_atoms_solvent 280 _refine_hist.number_atoms_total 2663 _refine_hist.d_res_high 1.18 _refine_hist.d_res_low 70.96 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.1798 1.1933 2994 0.2552 82.00 0.2577 . . 157 . . 'X-RAY DIFFRACTION' . 1.1933 1.2073 3050 0.2270 85.00 0.2429 . . 161 . . 'X-RAY DIFFRACTION' . 1.2073 1.2220 3291 0.2006 91.00 0.2451 . . 173 . . 'X-RAY DIFFRACTION' . 1.2220 1.2375 3317 0.1852 93.00 0.2143 . . 175 . . 'X-RAY DIFFRACTION' . 1.2375 1.2538 3387 0.1607 93.00 0.1732 . . 178 . . 'X-RAY DIFFRACTION' . 1.2538 1.2709 3369 0.1568 93.00 0.1919 . . 177 . . 'X-RAY DIFFRACTION' . 1.2709 1.2891 3368 0.1511 93.00 0.1768 . . 177 . . 'X-RAY DIFFRACTION' . 1.2891 1.3084 3393 0.1418 94.00 0.1501 . . 179 . . 'X-RAY DIFFRACTION' . 1.3084 1.3288 3393 0.1337 95.00 0.1648 . . 179 . . 'X-RAY DIFFRACTION' . 1.3288 1.3506 3471 0.1271 95.00 0.1462 . . 182 . . 'X-RAY DIFFRACTION' . 1.3506 1.3739 3392 0.1132 95.00 0.1430 . . 179 . . 'X-RAY DIFFRACTION' . 1.3739 1.3989 3436 0.1081 95.00 0.1275 . . 181 . . 'X-RAY DIFFRACTION' . 1.3989 1.4258 3488 0.0999 95.00 0.1234 . . 183 . . 'X-RAY DIFFRACTION' . 1.4258 1.4549 3386 0.0977 95.00 0.1300 . . 178 . . 'X-RAY DIFFRACTION' . 1.4549 1.4865 3411 0.0934 95.00 0.1240 . . 180 . . 'X-RAY DIFFRACTION' . 1.4865 1.5211 3483 0.0888 95.00 0.1320 . . 183 . . 'X-RAY DIFFRACTION' . 1.5211 1.5591 3481 0.0843 96.00 0.1121 . . 183 . . 'X-RAY DIFFRACTION' . 1.5591 1.6013 3472 0.0877 97.00 0.1142 . . 183 . . 'X-RAY DIFFRACTION' . 1.6013 1.6484 3506 0.0853 97.00 0.1092 . . 185 . . 'X-RAY DIFFRACTION' . 1.6484 1.7016 3480 0.0872 97.00 0.1096 . . 183 . . 'X-RAY DIFFRACTION' . 1.7016 1.7624 3522 0.0898 97.00 0.1200 . . 185 . . 'X-RAY DIFFRACTION' . 1.7624 1.8330 3515 0.0942 97.00 0.1050 . . 185 . . 'X-RAY DIFFRACTION' . 1.8330 1.9164 3544 0.0964 97.00 0.1160 . . 187 . . 'X-RAY DIFFRACTION' . 1.9164 2.0175 3526 0.0971 98.00 0.1079 . . 185 . . 'X-RAY DIFFRACTION' . 2.0175 2.1439 3553 0.1010 98.00 0.1166 . . 187 . . 'X-RAY DIFFRACTION' . 2.1439 2.3094 3565 0.1078 98.00 0.1245 . . 188 . . 'X-RAY DIFFRACTION' . 2.3094 2.5419 3583 0.1195 98.00 0.1387 . . 189 . . 'X-RAY DIFFRACTION' . 2.5419 2.9097 3612 0.1329 99.00 0.1324 . . 190 . . 'X-RAY DIFFRACTION' . 2.9097 3.6659 3599 0.1392 99.00 0.1524 . . 189 . . 'X-RAY DIFFRACTION' . 3.6659 71.0872 3674 0.1495 99.00 0.1560 . . 193 . . # _database_PDB_matrix.entry_id 5AF9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5AF9 _struct.title 'Thrombin in complex with 4-Methoxy-N-(2-pyridinyl)benzamide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AF9 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;HYDROLASE, HYDROLASE INHIBITOR COMPLEX, SERINE PROTEASE, BLOOD COAGULATION, BLOOD CLOTTING, CONVERTION OF FIBRINOGEN TO FIBRIN, BLOOD CLOTTING INHIBITOR, THROMBIN INHIBITOR, FRAGMENT, GLYCOSYLATION, BLOOD ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 7 ? J N N 8 ? K N N 9 ? L N N 9 ? M N N 9 ? N N N 10 ? O N N 11 ? P N N 11 ? Q N N 11 ? R N N 11 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN 1 ? ? P00734 ? 2 UNP HIRV2_HIRME 2 ? ? P09945 ? 3 UNP THRB_HUMAN 3 ? ? P00734 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5AF9 H 1 ? 258 ? P00734 364 ? 621 ? 16 246 2 2 5AF9 I 1 ? 12 ? P09945 61 ? 72 ? 517 528 3 3 5AF9 L 1 C 29 ? P00734 333 ? 361 ? 1 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5350 ? 1 MORE -30.3 ? 1 'SSA (A^2)' 12500 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 41 ? CYS A 44 ? ALA H 55 CYS H 58 5 ? 4 HELX_P HELX_P2 2 PRO A 48 B ASP A 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P3 3 THR A 55 I ASN A 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P4 4 ASP A 122 ? LEU A 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P5 5 GLU A 169 ? SER A 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P6 6 LYS A 191 ? GLY A 195 C LYS H 185 GLY H 186 5 ? 5 HELX_P HELX_P7 7 LEU A 246 ? PHE A 257 ? LEU H 234 PHE H 245 1 ? 12 HELX_P HELX_P8 8 PHE C 10 ? SER C 14 ? PHE L 7 SER L 11 5 ? 5 HELX_P HELX_P9 9 THR C 19 B TYR C 27 J THR L 14 TYR L 14 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.054 ? ? disulf2 disulf ? ? A CYS 119 SG ? ? ? 1_555 C CYS 4 SG ? ? H CYS 122 L CYS 1 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf3 disulf ? ? A CYS 173 SG ? ? ? 1_555 A CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? A CYS 201 SG ? ? ? 1_555 A CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.047 ? ? covale1 covale one ? A ASN 53 ND2 ? G ? 1_555 D NAG . C1 ? ? H ASN 60 H NAG 1060 1_555 ? ? ? ? ? ? ? 1.426 ? N-Glycosylation covale2 covale both ? B GLU 9 C ? ? ? 1_555 B TYS 10 N ? ? I GLU 525 I TYS 526 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? B TYS 10 C ? ? ? 1_555 B LEU 11 N ? ? I TYS 526 I LEU 527 1_555 ? ? ? ? ? ? ? 1.327 ? ? metalc1 metalc ? ? A LYS 174 O ? ? ? 1_555 E NA . NA ? ? H LYS 169 H NA 1246 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc2 metalc ? ? A THR 177 O ? ? ? 1_555 E NA . NA ? ? H THR 172 H NA 1246 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc3 metalc ? ? A ARG 233 O ? A ? 1_555 F NA . NA ? ? H ARG 221 H NA 1247 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc4 metalc ? ? A LYS 236 O ? ? ? 1_555 F NA . NA ? ? H LYS 224 H NA 1247 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 O HOH . O ? ? H NA 1246 H HOH 2185 1_555 ? ? ? ? ? ? ? 2.578 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 O HOH . O ? ? H NA 1246 H HOH 2186 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc7 metalc ? ? F NA . NA ? ? ? 1_555 O HOH . O ? ? H NA 1247 H HOH 2202 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc8 metalc ? ? F NA . NA ? ? ? 1_555 O HOH . O ? ? H NA 1247 H HOH 2203 1_555 ? ? ? ? ? ? ? 2.662 ? ? metalc9 metalc ? ? F NA . NA ? ? ? 1_555 O HOH . O ? ? H NA 1247 H HOH 2211 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc10 metalc ? ? F NA . NA ? ? ? 1_555 O HOH . O ? ? H NA 1247 H HOH 2234 1_555 ? ? ? ? ? ? ? 2.372 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LYS 174 ? H LYS 169 ? 1_555 NA ? E NA . ? H NA 1246 ? 1_555 O ? A THR 177 ? H THR 172 ? 1_555 82.2 ? 2 O ? A LYS 174 ? H LYS 169 ? 1_555 NA ? E NA . ? H NA 1246 ? 1_555 O ? O HOH . ? H HOH 2185 ? 1_555 70.4 ? 3 O ? A THR 177 ? H THR 172 ? 1_555 NA ? E NA . ? H NA 1246 ? 1_555 O ? O HOH . ? H HOH 2185 ? 1_555 79.7 ? 4 O ? A LYS 174 ? H LYS 169 ? 1_555 NA ? E NA . ? H NA 1246 ? 1_555 O ? O HOH . ? H HOH 2186 ? 1_555 82.0 ? 5 O ? A THR 177 ? H THR 172 ? 1_555 NA ? E NA . ? H NA 1246 ? 1_555 O ? O HOH . ? H HOH 2186 ? 1_555 163.8 ? 6 O ? O HOH . ? H HOH 2185 ? 1_555 NA ? E NA . ? H NA 1246 ? 1_555 O ? O HOH . ? H HOH 2186 ? 1_555 98.2 ? 7 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? A LYS 236 ? H LYS 224 ? 1_555 94.6 ? 8 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2202 ? 1_555 161.0 ? 9 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2202 ? 1_555 70.0 ? 10 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2203 ? 1_555 86.5 ? 11 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2203 ? 1_555 91.0 ? 12 O ? O HOH . ? H HOH 2202 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2203 ? 1_555 82.7 ? 13 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2211 ? 1_555 98.0 ? 14 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2211 ? 1_555 84.6 ? 15 O ? O HOH . ? H HOH 2202 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2211 ? 1_555 91.8 ? 16 O ? O HOH . ? H HOH 2203 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2211 ? 1_555 173.9 ? 17 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2234 ? 1_555 105.8 ? 18 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2234 ? 1_555 158.2 ? 19 O ? O HOH . ? H HOH 2202 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2234 ? 1_555 88.4 ? 20 O ? O HOH . ? H HOH 2203 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2234 ? 1_555 83.0 ? 21 O ? O HOH . ? H HOH 2211 ? 1_555 NA ? F NA . ? H NA 1247 ? 1_555 O ? O HOH . ? H HOH 2234 ? 1_555 99.6 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.56 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details HA ? 7 ? HB ? 7 ? HC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense HA 1 2 ? anti-parallel HA 2 3 ? anti-parallel HA 3 4 ? anti-parallel HA 4 5 ? anti-parallel HA 5 6 ? anti-parallel HA 6 7 ? anti-parallel HB 1 2 ? anti-parallel HB 2 3 ? anti-parallel HB 3 4 ? anti-parallel HB 4 5 ? anti-parallel HB 5 6 ? anti-parallel HB 6 7 ? anti-parallel HC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id HA 1 SER A 5 ? ASP A 6 ? SER H 20 ASP H 21 HA 2 GLN A 161 ? PRO A 166 ? GLN H 156 PRO H 161 HA 3 LYS A 135 ? GLY A 140 ? LYS H 135 GLY H 140 HA 4 PRO A 208 ? LYS A 212 ? PRO H 198 LYS H 202 HA 5 TRP A 219 ? TRP A 227 ? TRP H 207 TRP H 215 HA 6 GLY A 238 ? HIS A 242 ? GLY H 226 HIS H 230 HA 7 MET A 185 ? ALA A 188 ? MET H 180 ALA H 183 HB 1 GLN A 15 ? ARG A 20 ? GLN H 30 ARG H 35 HB 2 GLU A 25 ? LEU A 32 ? GLU H 39 LEU H 46 HB 3 TRP A 37 ? THR A 40 ? TRP H 51 THR H 54 HB 4 ALA A 101 ? LEU A 105 ? ALA H 104 LEU H 108 HB 5 LYS A 77 ? ILE A 86 ? LYS H 81 ILE H 90 HB 6 LEU A 59 ? ILE A 63 ? LEU H 64 ILE H 68 HB 7 GLN A 15 ? ARG A 20 ? GLN H 30 ARG H 35 HC 1 LEU A 46 ? TYR A 47 A LEU H 60 TYR H 60 HC 2 LYS A 52 F ASN A 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id HA 1 2 N SER A 5 ? N SER H 20 O VAL A 162 ? O VAL H 157 HA 2 3 N LEU A 165 ? N LEU H 160 O GLY A 136 ? O GLY H 136 HA 3 4 N THR A 139 ? N THR H 139 O PRO A 208 ? O PRO H 198 HA 4 5 N MET A 211 ? N MET H 201 O TYR A 220 ? O TYR H 208 HA 5 6 N SER A 226 ? N SER H 214 O PHE A 239 ? O PHE H 227 HA 6 7 N TYR A 240 ? N TYR H 228 O PHE A 186 ? O PHE H 181 HB 1 2 N ARG A 20 ? N ARG H 35 O GLU A 25 ? O GLU H 39 HB 2 3 N SER A 31 ? N SER H 45 O LEU A 39 ? O LEU H 53 HB 3 4 N THR A 40 ? N THR H 54 O ALA A 101 ? O ALA H 104 HB 4 5 O LYS A 104 ? O LYS H 107 N GLU A 82 ? N GLU H 86 HB 5 6 N LEU A 81 ? N LEU H 85 O LEU A 59 ? O LEU H 64 HB 6 7 N ARG A 62 ? N ARG H 67 O MET A 17 ? O MET H 32 HC 1 2 N TYR A 47 A N TYR H 60 O LYS A 52 F O LYS H 60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR H 60 A ? -154.12 85.51 2 1 ASN H 60 G ? -158.22 78.97 3 1 HIS H 71 ? ? -131.34 -62.48 4 1 ILE H 79 ? ? -126.47 -63.14 5 1 GLU H 97 A ? -116.30 -70.06 6 1 PHE L 7 ? ? -129.33 -90.49 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 53 H ASN 60 G ASN 'GLYCOSYLATION SITE' 2 B TYS 10 I TYS 526 ? TYR O-SULFO-L-TYROSINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id H _pdbx_struct_special_symmetry.auth_comp_id ARG _pdbx_struct_special_symmetry.auth_seq_id 75 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id A _pdbx_struct_special_symmetry.label_comp_id ARG _pdbx_struct_special_symmetry.label_seq_id 70 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "HB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 5AF9 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;ASP 14L WAS NOT BUILD DUE TO LACK OF ELECTRON DESITY RESIDUES 148-149E AND 246 WERE NOT BUILD DUE TO LACK OF ELECTRON DESITY GLY 554 WAS NOT BUILD DUE TO LACK OF ELECTRON DESITY ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H TRP 147 A A TRP 148 2 1 Y 1 H THR 147 B A THR 149 3 1 Y 1 H ALA 147 C A ALA 150 4 1 Y 1 H ASN 147 D A ASN 151 5 1 Y 1 H VAL 147 E A VAL 152 6 1 Y 1 H GLY 148 ? A GLY 153 7 1 Y 1 H LYS 149 ? A LYS 154 8 1 Y 1 H GLY 246 ? A GLY 258 9 1 Y 1 I GLY 517 ? B GLY 1 10 1 Y 1 L ASP 15 ? C ASP 29 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DMS S S N N 88 DMS O O N N 89 DMS C1 C N N 90 DMS C2 C N N 91 DMS H11 H N N 92 DMS H12 H N N 93 DMS H13 H N N 94 DMS H21 H N N 95 DMS H22 H N N 96 DMS H23 H N N 97 EDO C1 C N N 98 EDO O1 O N N 99 EDO C2 C N N 100 EDO O2 O N N 101 EDO H11 H N N 102 EDO H12 H N N 103 EDO HO1 H N N 104 EDO H21 H N N 105 EDO H22 H N N 106 EDO HO2 H N N 107 GLN N N N N 108 GLN CA C N S 109 GLN C C N N 110 GLN O O N N 111 GLN CB C N N 112 GLN CG C N N 113 GLN CD C N N 114 GLN OE1 O N N 115 GLN NE2 N N N 116 GLN OXT O N N 117 GLN H H N N 118 GLN H2 H N N 119 GLN HA H N N 120 GLN HB2 H N N 121 GLN HB3 H N N 122 GLN HG2 H N N 123 GLN HG3 H N N 124 GLN HE21 H N N 125 GLN HE22 H N N 126 GLN HXT H N N 127 GLU N N N N 128 GLU CA C N S 129 GLU C C N N 130 GLU O O N N 131 GLU CB C N N 132 GLU CG C N N 133 GLU CD C N N 134 GLU OE1 O N N 135 GLU OE2 O N N 136 GLU OXT O N N 137 GLU H H N N 138 GLU H2 H N N 139 GLU HA H N N 140 GLU HB2 H N N 141 GLU HB3 H N N 142 GLU HG2 H N N 143 GLU HG3 H N N 144 GLU HE2 H N N 145 GLU HXT H N N 146 GLY N N N N 147 GLY CA C N N 148 GLY C C N N 149 GLY O O N N 150 GLY OXT O N N 151 GLY H H N N 152 GLY H2 H N N 153 GLY HA2 H N N 154 GLY HA3 H N N 155 GLY HXT H N N 156 GOL C1 C N N 157 GOL O1 O N N 158 GOL C2 C N N 159 GOL O2 O N N 160 GOL C3 C N N 161 GOL O3 O N N 162 GOL H11 H N N 163 GOL H12 H N N 164 GOL HO1 H N N 165 GOL H2 H N N 166 GOL HO2 H N N 167 GOL H31 H N N 168 GOL H32 H N N 169 GOL HO3 H N N 170 HIS N N N N 171 HIS CA C N S 172 HIS C C N N 173 HIS O O N N 174 HIS CB C N N 175 HIS CG C Y N 176 HIS ND1 N Y N 177 HIS CD2 C Y N 178 HIS CE1 C Y N 179 HIS NE2 N Y N 180 HIS OXT O N N 181 HIS H H N N 182 HIS H2 H N N 183 HIS HA H N N 184 HIS HB2 H N N 185 HIS HB3 H N N 186 HIS HD1 H N N 187 HIS HD2 H N N 188 HIS HE1 H N N 189 HIS HE2 H N N 190 HIS HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MET N N N N 264 MET CA C N S 265 MET C C N N 266 MET O O N N 267 MET CB C N N 268 MET CG C N N 269 MET SD S N N 270 MET CE C N N 271 MET OXT O N N 272 MET H H N N 273 MET H2 H N N 274 MET HA H N N 275 MET HB2 H N N 276 MET HB3 H N N 277 MET HG2 H N N 278 MET HG3 H N N 279 MET HE1 H N N 280 MET HE2 H N N 281 MET HE3 H N N 282 MET HXT H N N 283 NA NA NA N N 284 NAG C1 C N R 285 NAG C2 C N R 286 NAG C3 C N R 287 NAG C4 C N S 288 NAG C5 C N R 289 NAG C6 C N N 290 NAG C7 C N N 291 NAG C8 C N N 292 NAG N2 N N N 293 NAG O1 O N N 294 NAG O3 O N N 295 NAG O4 O N N 296 NAG O5 O N N 297 NAG O6 O N N 298 NAG O7 O N N 299 NAG H1 H N N 300 NAG H2 H N N 301 NAG H3 H N N 302 NAG H4 H N N 303 NAG H5 H N N 304 NAG H61 H N N 305 NAG H62 H N N 306 NAG H81 H N N 307 NAG H82 H N N 308 NAG H83 H N N 309 NAG HN2 H N N 310 NAG HO1 H N N 311 NAG HO3 H N N 312 NAG HO4 H N N 313 NAG HO6 H N N 314 PHE N N N N 315 PHE CA C N S 316 PHE C C N N 317 PHE O O N N 318 PHE CB C N N 319 PHE CG C Y N 320 PHE CD1 C Y N 321 PHE CD2 C Y N 322 PHE CE1 C Y N 323 PHE CE2 C Y N 324 PHE CZ C Y N 325 PHE OXT O N N 326 PHE H H N N 327 PHE H2 H N N 328 PHE HA H N N 329 PHE HB2 H N N 330 PHE HB3 H N N 331 PHE HD1 H N N 332 PHE HD2 H N N 333 PHE HE1 H N N 334 PHE HE2 H N N 335 PHE HZ H N N 336 PHE HXT H N N 337 PO4 P P N N 338 PO4 O1 O N N 339 PO4 O2 O N N 340 PO4 O3 O N N 341 PO4 O4 O N N 342 PRO N N N N 343 PRO CA C N S 344 PRO C C N N 345 PRO O O N N 346 PRO CB C N N 347 PRO CG C N N 348 PRO CD C N N 349 PRO OXT O N N 350 PRO H H N N 351 PRO HA H N N 352 PRO HB2 H N N 353 PRO HB3 H N N 354 PRO HG2 H N N 355 PRO HG3 H N N 356 PRO HD2 H N N 357 PRO HD3 H N N 358 PRO HXT H N N 359 SER N N N N 360 SER CA C N S 361 SER C C N N 362 SER O O N N 363 SER CB C N N 364 SER OG O N N 365 SER OXT O N N 366 SER H H N N 367 SER H2 H N N 368 SER HA H N N 369 SER HB2 H N N 370 SER HB3 H N N 371 SER HG H N N 372 SER HXT H N N 373 SJR C C N N 374 SJR N N N N 375 SJR O O N N 376 SJR C1 C Y N 377 SJR N1 N Y N 378 SJR O1 O N N 379 SJR C2 C Y N 380 SJR C3 C Y N 381 SJR C4 C Y N 382 SJR C5 C N N 383 SJR C6 C Y N 384 SJR C7 C Y N 385 SJR C8 C Y N 386 SJR C9 C Y N 387 SJR C10 C Y N 388 SJR C11 C Y N 389 SJR C12 C Y N 390 SJR H H N N 391 SJR HA H N N 392 SJR HB H N N 393 SJR HN H N N 394 SJR H2 H N N 395 SJR H3 H N N 396 SJR H7 H N N 397 SJR H8 H N N 398 SJR H9 H N N 399 SJR H10 H N N 400 SJR H11 H N N 401 SJR H12 H N N 402 THR N N N N 403 THR CA C N S 404 THR C C N N 405 THR O O N N 406 THR CB C N R 407 THR OG1 O N N 408 THR CG2 C N N 409 THR OXT O N N 410 THR H H N N 411 THR H2 H N N 412 THR HA H N N 413 THR HB H N N 414 THR HG1 H N N 415 THR HG21 H N N 416 THR HG22 H N N 417 THR HG23 H N N 418 THR HXT H N N 419 TRP N N N N 420 TRP CA C N S 421 TRP C C N N 422 TRP O O N N 423 TRP CB C N N 424 TRP CG C Y N 425 TRP CD1 C Y N 426 TRP CD2 C Y N 427 TRP NE1 N Y N 428 TRP CE2 C Y N 429 TRP CE3 C Y N 430 TRP CZ2 C Y N 431 TRP CZ3 C Y N 432 TRP CH2 C Y N 433 TRP OXT O N N 434 TRP H H N N 435 TRP H2 H N N 436 TRP HA H N N 437 TRP HB2 H N N 438 TRP HB3 H N N 439 TRP HD1 H N N 440 TRP HE1 H N N 441 TRP HE3 H N N 442 TRP HZ2 H N N 443 TRP HZ3 H N N 444 TRP HH2 H N N 445 TRP HXT H N N 446 TYR N N N N 447 TYR CA C N S 448 TYR C C N N 449 TYR O O N N 450 TYR CB C N N 451 TYR CG C Y N 452 TYR CD1 C Y N 453 TYR CD2 C Y N 454 TYR CE1 C Y N 455 TYR CE2 C Y N 456 TYR CZ C Y N 457 TYR OH O N N 458 TYR OXT O N N 459 TYR H H N N 460 TYR H2 H N N 461 TYR HA H N N 462 TYR HB2 H N N 463 TYR HB3 H N N 464 TYR HD1 H N N 465 TYR HD2 H N N 466 TYR HE1 H N N 467 TYR HE2 H N N 468 TYR HH H N N 469 TYR HXT H N N 470 TYS N N N N 471 TYS CA C N S 472 TYS CB C N N 473 TYS CG C Y N 474 TYS CD1 C Y N 475 TYS CD2 C Y N 476 TYS CE1 C Y N 477 TYS CE2 C Y N 478 TYS CZ C Y N 479 TYS OH O N N 480 TYS S S N N 481 TYS O1 O N N 482 TYS O2 O N N 483 TYS O3 O N N 484 TYS C C N N 485 TYS O O N N 486 TYS OXT O N N 487 TYS H H N N 488 TYS H2 H N N 489 TYS HA H N N 490 TYS HB2 H N N 491 TYS HB3 H N N 492 TYS HD1 H N N 493 TYS HD2 H N N 494 TYS HE1 H N N 495 TYS HE2 H N N 496 TYS HO3 H N N 497 TYS HXT H N N 498 VAL N N N N 499 VAL CA C N S 500 VAL C C N N 501 VAL O O N N 502 VAL CB C N N 503 VAL CG1 C N N 504 VAL CG2 C N N 505 VAL OXT O N N 506 VAL H H N N 507 VAL H2 H N N 508 VAL HA H N N 509 VAL HB H N N 510 VAL HG11 H N N 511 VAL HG12 H N N 512 VAL HG13 H N N 513 VAL HG21 H N N 514 VAL HG22 H N N 515 VAL HG23 H N N 516 VAL HXT H N N 517 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DMS S O doub N N 83 DMS S C1 sing N N 84 DMS S C2 sing N N 85 DMS C1 H11 sing N N 86 DMS C1 H12 sing N N 87 DMS C1 H13 sing N N 88 DMS C2 H21 sing N N 89 DMS C2 H22 sing N N 90 DMS C2 H23 sing N N 91 EDO C1 O1 sing N N 92 EDO C1 C2 sing N N 93 EDO C1 H11 sing N N 94 EDO C1 H12 sing N N 95 EDO O1 HO1 sing N N 96 EDO C2 O2 sing N N 97 EDO C2 H21 sing N N 98 EDO C2 H22 sing N N 99 EDO O2 HO2 sing N N 100 GLN N CA sing N N 101 GLN N H sing N N 102 GLN N H2 sing N N 103 GLN CA C sing N N 104 GLN CA CB sing N N 105 GLN CA HA sing N N 106 GLN C O doub N N 107 GLN C OXT sing N N 108 GLN CB CG sing N N 109 GLN CB HB2 sing N N 110 GLN CB HB3 sing N N 111 GLN CG CD sing N N 112 GLN CG HG2 sing N N 113 GLN CG HG3 sing N N 114 GLN CD OE1 doub N N 115 GLN CD NE2 sing N N 116 GLN NE2 HE21 sing N N 117 GLN NE2 HE22 sing N N 118 GLN OXT HXT sing N N 119 GLU N CA sing N N 120 GLU N H sing N N 121 GLU N H2 sing N N 122 GLU CA C sing N N 123 GLU CA CB sing N N 124 GLU CA HA sing N N 125 GLU C O doub N N 126 GLU C OXT sing N N 127 GLU CB CG sing N N 128 GLU CB HB2 sing N N 129 GLU CB HB3 sing N N 130 GLU CG CD sing N N 131 GLU CG HG2 sing N N 132 GLU CG HG3 sing N N 133 GLU CD OE1 doub N N 134 GLU CD OE2 sing N N 135 GLU OE2 HE2 sing N N 136 GLU OXT HXT sing N N 137 GLY N CA sing N N 138 GLY N H sing N N 139 GLY N H2 sing N N 140 GLY CA C sing N N 141 GLY CA HA2 sing N N 142 GLY CA HA3 sing N N 143 GLY C O doub N N 144 GLY C OXT sing N N 145 GLY OXT HXT sing N N 146 GOL C1 O1 sing N N 147 GOL C1 C2 sing N N 148 GOL C1 H11 sing N N 149 GOL C1 H12 sing N N 150 GOL O1 HO1 sing N N 151 GOL C2 O2 sing N N 152 GOL C2 C3 sing N N 153 GOL C2 H2 sing N N 154 GOL O2 HO2 sing N N 155 GOL C3 O3 sing N N 156 GOL C3 H31 sing N N 157 GOL C3 H32 sing N N 158 GOL O3 HO3 sing N N 159 HIS N CA sing N N 160 HIS N H sing N N 161 HIS N H2 sing N N 162 HIS CA C sing N N 163 HIS CA CB sing N N 164 HIS CA HA sing N N 165 HIS C O doub N N 166 HIS C OXT sing N N 167 HIS CB CG sing N N 168 HIS CB HB2 sing N N 169 HIS CB HB3 sing N N 170 HIS CG ND1 sing Y N 171 HIS CG CD2 doub Y N 172 HIS ND1 CE1 doub Y N 173 HIS ND1 HD1 sing N N 174 HIS CD2 NE2 sing Y N 175 HIS CD2 HD2 sing N N 176 HIS CE1 NE2 sing Y N 177 HIS CE1 HE1 sing N N 178 HIS NE2 HE2 sing N N 179 HIS OXT HXT sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 ILE N CA sing N N 183 ILE N H sing N N 184 ILE N H2 sing N N 185 ILE CA C sing N N 186 ILE CA CB sing N N 187 ILE CA HA sing N N 188 ILE C O doub N N 189 ILE C OXT sing N N 190 ILE CB CG1 sing N N 191 ILE CB CG2 sing N N 192 ILE CB HB sing N N 193 ILE CG1 CD1 sing N N 194 ILE CG1 HG12 sing N N 195 ILE CG1 HG13 sing N N 196 ILE CG2 HG21 sing N N 197 ILE CG2 HG22 sing N N 198 ILE CG2 HG23 sing N N 199 ILE CD1 HD11 sing N N 200 ILE CD1 HD12 sing N N 201 ILE CD1 HD13 sing N N 202 ILE OXT HXT sing N N 203 LEU N CA sing N N 204 LEU N H sing N N 205 LEU N H2 sing N N 206 LEU CA C sing N N 207 LEU CA CB sing N N 208 LEU CA HA sing N N 209 LEU C O doub N N 210 LEU C OXT sing N N 211 LEU CB CG sing N N 212 LEU CB HB2 sing N N 213 LEU CB HB3 sing N N 214 LEU CG CD1 sing N N 215 LEU CG CD2 sing N N 216 LEU CG HG sing N N 217 LEU CD1 HD11 sing N N 218 LEU CD1 HD12 sing N N 219 LEU CD1 HD13 sing N N 220 LEU CD2 HD21 sing N N 221 LEU CD2 HD22 sing N N 222 LEU CD2 HD23 sing N N 223 LEU OXT HXT sing N N 224 LYS N CA sing N N 225 LYS N H sing N N 226 LYS N H2 sing N N 227 LYS CA C sing N N 228 LYS CA CB sing N N 229 LYS CA HA sing N N 230 LYS C O doub N N 231 LYS C OXT sing N N 232 LYS CB CG sing N N 233 LYS CB HB2 sing N N 234 LYS CB HB3 sing N N 235 LYS CG CD sing N N 236 LYS CG HG2 sing N N 237 LYS CG HG3 sing N N 238 LYS CD CE sing N N 239 LYS CD HD2 sing N N 240 LYS CD HD3 sing N N 241 LYS CE NZ sing N N 242 LYS CE HE2 sing N N 243 LYS CE HE3 sing N N 244 LYS NZ HZ1 sing N N 245 LYS NZ HZ2 sing N N 246 LYS NZ HZ3 sing N N 247 LYS OXT HXT sing N N 248 MET N CA sing N N 249 MET N H sing N N 250 MET N H2 sing N N 251 MET CA C sing N N 252 MET CA CB sing N N 253 MET CA HA sing N N 254 MET C O doub N N 255 MET C OXT sing N N 256 MET CB CG sing N N 257 MET CB HB2 sing N N 258 MET CB HB3 sing N N 259 MET CG SD sing N N 260 MET CG HG2 sing N N 261 MET CG HG3 sing N N 262 MET SD CE sing N N 263 MET CE HE1 sing N N 264 MET CE HE2 sing N N 265 MET CE HE3 sing N N 266 MET OXT HXT sing N N 267 NAG C1 C2 sing N N 268 NAG C1 O1 sing N N 269 NAG C1 O5 sing N N 270 NAG C1 H1 sing N N 271 NAG C2 C3 sing N N 272 NAG C2 N2 sing N N 273 NAG C2 H2 sing N N 274 NAG C3 C4 sing N N 275 NAG C3 O3 sing N N 276 NAG C3 H3 sing N N 277 NAG C4 C5 sing N N 278 NAG C4 O4 sing N N 279 NAG C4 H4 sing N N 280 NAG C5 C6 sing N N 281 NAG C5 O5 sing N N 282 NAG C5 H5 sing N N 283 NAG C6 O6 sing N N 284 NAG C6 H61 sing N N 285 NAG C6 H62 sing N N 286 NAG C7 C8 sing N N 287 NAG C7 N2 sing N N 288 NAG C7 O7 doub N N 289 NAG C8 H81 sing N N 290 NAG C8 H82 sing N N 291 NAG C8 H83 sing N N 292 NAG N2 HN2 sing N N 293 NAG O1 HO1 sing N N 294 NAG O3 HO3 sing N N 295 NAG O4 HO4 sing N N 296 NAG O6 HO6 sing N N 297 PHE N CA sing N N 298 PHE N H sing N N 299 PHE N H2 sing N N 300 PHE CA C sing N N 301 PHE CA CB sing N N 302 PHE CA HA sing N N 303 PHE C O doub N N 304 PHE C OXT sing N N 305 PHE CB CG sing N N 306 PHE CB HB2 sing N N 307 PHE CB HB3 sing N N 308 PHE CG CD1 doub Y N 309 PHE CG CD2 sing Y N 310 PHE CD1 CE1 sing Y N 311 PHE CD1 HD1 sing N N 312 PHE CD2 CE2 doub Y N 313 PHE CD2 HD2 sing N N 314 PHE CE1 CZ doub Y N 315 PHE CE1 HE1 sing N N 316 PHE CE2 CZ sing Y N 317 PHE CE2 HE2 sing N N 318 PHE CZ HZ sing N N 319 PHE OXT HXT sing N N 320 PO4 P O1 doub N N 321 PO4 P O2 sing N N 322 PO4 P O3 sing N N 323 PO4 P O4 sing N N 324 PRO N CA sing N N 325 PRO N CD sing N N 326 PRO N H sing N N 327 PRO CA C sing N N 328 PRO CA CB sing N N 329 PRO CA HA sing N N 330 PRO C O doub N N 331 PRO C OXT sing N N 332 PRO CB CG sing N N 333 PRO CB HB2 sing N N 334 PRO CB HB3 sing N N 335 PRO CG CD sing N N 336 PRO CG HG2 sing N N 337 PRO CG HG3 sing N N 338 PRO CD HD2 sing N N 339 PRO CD HD3 sing N N 340 PRO OXT HXT sing N N 341 SER N CA sing N N 342 SER N H sing N N 343 SER N H2 sing N N 344 SER CA C sing N N 345 SER CA CB sing N N 346 SER CA HA sing N N 347 SER C O doub N N 348 SER C OXT sing N N 349 SER CB OG sing N N 350 SER CB HB2 sing N N 351 SER CB HB3 sing N N 352 SER OG HG sing N N 353 SER OXT HXT sing N N 354 SJR C O sing N N 355 SJR N C5 sing N N 356 SJR N C6 sing N N 357 SJR O C1 sing N N 358 SJR C1 C2 doub Y N 359 SJR C1 C12 sing Y N 360 SJR N1 C6 doub Y N 361 SJR N1 C10 sing Y N 362 SJR O1 C5 doub N N 363 SJR C2 C3 sing Y N 364 SJR C3 C4 doub Y N 365 SJR C4 C5 sing N N 366 SJR C4 C11 sing Y N 367 SJR C6 C7 sing Y N 368 SJR C7 C8 doub Y N 369 SJR C8 C9 sing Y N 370 SJR C9 C10 doub Y N 371 SJR C11 C12 doub Y N 372 SJR C H sing N N 373 SJR C HA sing N N 374 SJR C HB sing N N 375 SJR N HN sing N N 376 SJR C2 H2 sing N N 377 SJR C3 H3 sing N N 378 SJR C7 H7 sing N N 379 SJR C8 H8 sing N N 380 SJR C9 H9 sing N N 381 SJR C10 H10 sing N N 382 SJR C11 H11 sing N N 383 SJR C12 H12 sing N N 384 THR N CA sing N N 385 THR N H sing N N 386 THR N H2 sing N N 387 THR CA C sing N N 388 THR CA CB sing N N 389 THR CA HA sing N N 390 THR C O doub N N 391 THR C OXT sing N N 392 THR CB OG1 sing N N 393 THR CB CG2 sing N N 394 THR CB HB sing N N 395 THR OG1 HG1 sing N N 396 THR CG2 HG21 sing N N 397 THR CG2 HG22 sing N N 398 THR CG2 HG23 sing N N 399 THR OXT HXT sing N N 400 TRP N CA sing N N 401 TRP N H sing N N 402 TRP N H2 sing N N 403 TRP CA C sing N N 404 TRP CA CB sing N N 405 TRP CA HA sing N N 406 TRP C O doub N N 407 TRP C OXT sing N N 408 TRP CB CG sing N N 409 TRP CB HB2 sing N N 410 TRP CB HB3 sing N N 411 TRP CG CD1 doub Y N 412 TRP CG CD2 sing Y N 413 TRP CD1 NE1 sing Y N 414 TRP CD1 HD1 sing N N 415 TRP CD2 CE2 doub Y N 416 TRP CD2 CE3 sing Y N 417 TRP NE1 CE2 sing Y N 418 TRP NE1 HE1 sing N N 419 TRP CE2 CZ2 sing Y N 420 TRP CE3 CZ3 doub Y N 421 TRP CE3 HE3 sing N N 422 TRP CZ2 CH2 doub Y N 423 TRP CZ2 HZ2 sing N N 424 TRP CZ3 CH2 sing Y N 425 TRP CZ3 HZ3 sing N N 426 TRP CH2 HH2 sing N N 427 TRP OXT HXT sing N N 428 TYR N CA sing N N 429 TYR N H sing N N 430 TYR N H2 sing N N 431 TYR CA C sing N N 432 TYR CA CB sing N N 433 TYR CA HA sing N N 434 TYR C O doub N N 435 TYR C OXT sing N N 436 TYR CB CG sing N N 437 TYR CB HB2 sing N N 438 TYR CB HB3 sing N N 439 TYR CG CD1 doub Y N 440 TYR CG CD2 sing Y N 441 TYR CD1 CE1 sing Y N 442 TYR CD1 HD1 sing N N 443 TYR CD2 CE2 doub Y N 444 TYR CD2 HD2 sing N N 445 TYR CE1 CZ doub Y N 446 TYR CE1 HE1 sing N N 447 TYR CE2 CZ sing Y N 448 TYR CE2 HE2 sing N N 449 TYR CZ OH sing N N 450 TYR OH HH sing N N 451 TYR OXT HXT sing N N 452 TYS N CA sing N N 453 TYS N H sing N N 454 TYS N H2 sing N N 455 TYS CA CB sing N N 456 TYS CA C sing N N 457 TYS CA HA sing N N 458 TYS CB CG sing N N 459 TYS CB HB2 sing N N 460 TYS CB HB3 sing N N 461 TYS CG CD1 doub Y N 462 TYS CG CD2 sing Y N 463 TYS CD1 CE1 sing Y N 464 TYS CD1 HD1 sing N N 465 TYS CD2 CE2 doub Y N 466 TYS CD2 HD2 sing N N 467 TYS CE1 CZ doub Y N 468 TYS CE1 HE1 sing N N 469 TYS CE2 CZ sing Y N 470 TYS CE2 HE2 sing N N 471 TYS CZ OH sing N N 472 TYS OH S sing N N 473 TYS S O1 doub N N 474 TYS S O2 doub N N 475 TYS S O3 sing N N 476 TYS O3 HO3 sing N N 477 TYS C O doub N N 478 TYS C OXT sing N N 479 TYS OXT HXT sing N N 480 VAL N CA sing N N 481 VAL N H sing N N 482 VAL N H2 sing N N 483 VAL CA C sing N N 484 VAL CA CB sing N N 485 VAL CA HA sing N N 486 VAL C O doub N N 487 VAL C OXT sing N N 488 VAL CB CG1 sing N N 489 VAL CB CG2 sing N N 490 VAL CB HB sing N N 491 VAL CG1 HG11 sing N N 492 VAL CG1 HG12 sing N N 493 VAL CG1 HG13 sing N N 494 VAL CG2 HG21 sing N N 495 VAL CG2 HG22 sing N N 496 VAL CG2 HG23 sing N N 497 VAL OXT HXT sing N N 498 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1H8D _pdbx_initial_refinement_model.details 'PDB ENTRY 1H8D' # _atom_sites.entry_id 5AF9 _atom_sites.fract_transf_matrix[1][1] 0.014279 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002615 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014036 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014093 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O P S # loop_