HEADER TRANSFERASE 26-JAN-15 5AFV TITLE PHARMACOPHORE-BASED VIRTUAL SCREENING TO DISCOVER NEW ACTIVE COMPOUNDS TITLE 2 FOR HUMAN CHOLINE KINASE ALPHA1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE KINASE ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 80-457; COMPND 5 SYNONYM: CK, CHETK-ALPHA, ETHANOLAMINE KINASE, EK; COMPND 6 EC: 2.7.1.32, 2.7.1.82; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMALC2X KEYWDS TRANSFERASE, VIRTUAL SCREENING, PHARMACOPHORE EXPDTA X-RAY DIFFRACTION AUTHOR L.SERRAN-AGUILERA,R.NUTI,L.C.LOPEZ-CARA,M.A.GALLO MEZO,A.MACCHIARULO, AUTHOR 2 A.ENTRENA,R.HURTADO-GUERRERO REVDAT 4 10-JAN-24 5AFV 1 JRNL REMARK REVDAT 3 13-SEP-17 5AFV 1 REMARK REVDAT 2 17-AUG-16 5AFV 1 JRNL REVDAT 1 18-MAR-15 5AFV 0 JRNL AUTH L.SERRAN-AGUILERA,R.NUTI,L.C.LOPEZ-CARA,M.A.GALLO MEZO, JRNL AUTH 2 A.MACCHIARULO,A.ENTRENA,R.HURTADO-GUERRERO JRNL TITL PHARMACOPHORE-BASED VIRTUAL SCREENING TO DISCOVER NEW ACTIVE JRNL TITL 2 COMPOUNDS FOR HUMAN CHOLINE KINASE ALPHA1 JRNL REF MOL INFORM V. 34 458 2015 JRNL REFN ISSN 1868-1743 JRNL PMID 27490389 JRNL DOI 10.1002/MINF.201400140 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 132.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 41895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1236 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.56000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.312 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6161 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5843 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8282 ; 1.544 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13461 ; 1.114 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 712 ; 5.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 307 ;32.897 ;23.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1113 ;17.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;20.572 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 844 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6837 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1512 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2845 ; 2.321 ; 3.098 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2844 ; 2.322 ; 3.098 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3555 ; 3.661 ; 4.631 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3316 ; 2.727 ; 3.492 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3841 -6.9254 -4.5920 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.1469 REMARK 3 T33: 0.0087 T12: 0.0455 REMARK 3 T13: 0.0124 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.0455 L22: 0.4550 REMARK 3 L33: 1.0008 L12: 0.1377 REMARK 3 L13: -0.0903 L23: -0.2098 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: 0.0158 S13: -0.0097 REMARK 3 S21: 0.0312 S22: -0.0046 S23: -0.0446 REMARK 3 S31: -0.0529 S32: -0.0893 S33: -0.0247 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 457 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7062 24.4744 -25.6624 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.1237 REMARK 3 T33: 0.0419 T12: 0.0101 REMARK 3 T13: -0.0217 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.4399 L22: 0.6789 REMARK 3 L33: 0.7320 L12: -0.5207 REMARK 3 L13: 0.0013 L23: -0.2005 REMARK 3 S TENSOR REMARK 3 S11: -0.1108 S12: -0.0721 S13: 0.0074 REMARK 3 S21: 0.0895 S22: 0.1062 S23: 0.0002 REMARK 3 S31: 0.0674 S32: -0.0207 S33: 0.0047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5AFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1290062778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0507 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.20 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3G15 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.06450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.19650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.19650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.06450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 151 REMARK 465 LEU A 152 REMARK 465 GLN A 153 REMARK 465 MET A 154 REMARK 465 ARG A 155 REMARK 465 SER A 156 REMARK 465 CYS A 157 REMARK 465 ASN A 158 REMARK 465 LYS A 159 REMARK 465 GLU A 160 REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 GLU A 163 REMARK 465 GLN A 164 REMARK 465 ALA A 165 REMARK 465 GLN A 166 REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 ASN A 169 REMARK 465 GLU A 170 REMARK 465 PHE A 171 REMARK 465 GLN A 172 REMARK 465 GLY A 173 REMARK 465 ALA A 174 REMARK 465 ILE B 151 REMARK 465 LEU B 152 REMARK 465 GLN B 153 REMARK 465 MET B 154 REMARK 465 ARG B 155 REMARK 465 SER B 156 REMARK 465 CYS B 157 REMARK 465 ASN B 158 REMARK 465 LYS B 159 REMARK 465 GLU B 160 REMARK 465 GLY B 161 REMARK 465 SER B 162 REMARK 465 GLU B 163 REMARK 465 GLN B 164 REMARK 465 ALA B 165 REMARK 465 GLN B 166 REMARK 465 LYS B 167 REMARK 465 GLU B 168 REMARK 465 ASN B 169 REMARK 465 GLU B 170 REMARK 465 PHE B 171 REMARK 465 GLN B 172 REMARK 465 GLY B 173 REMARK 465 ALA B 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2027 O HOH B 2072 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2075 O HOH A 2100 4445 1.79 REMARK 500 O HOH A 2129 O HOH B 2018 2555 1.93 REMARK 500 O HOH A 2067 O HOH B 2121 3544 1.99 REMARK 500 O HOH A 2119 O HOH B 2118 3544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 81 133.48 -177.97 REMARK 500 SER A 211 178.78 179.23 REMARK 500 PRO A 241 46.73 -82.96 REMARK 500 ASN A 281 75.80 55.48 REMARK 500 SER A 295 30.99 -97.69 REMARK 500 ASP A 306 42.64 -162.29 REMARK 500 ASP A 330 70.94 74.22 REMARK 500 PHE A 331 36.68 -97.35 REMARK 500 ASN A 388 -26.41 94.05 REMARK 500 SER B 211 -178.89 -177.71 REMARK 500 PRO B 241 44.64 -78.09 REMARK 500 ASN B 281 72.86 58.04 REMARK 500 ASP B 306 42.20 -158.69 REMARK 500 ASP B 330 74.37 72.98 REMARK 500 ASN B 388 -26.00 93.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2063 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2122 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B2123 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B2124 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH B2125 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B2126 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B2128 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B2129 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B2131 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH B2134 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B2135 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B2137 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B2138 DISTANCE = 6.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1459 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JH5 A 1463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JH5 B 1459 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JH5 B 1460 DBREF 5AFV A 80 457 UNP P35790 CHKA_HUMAN 80 457 DBREF 5AFV B 80 457 UNP P35790 CHKA_HUMAN 80 457 SEQRES 1 A 378 ASP GLU GLN PRO GLU PRO ARG THR ARG ARG ARG ALA TYR SEQRES 2 A 378 LEU TRP CYS LYS GLU PHE LEU PRO GLY ALA TRP ARG GLY SEQRES 3 A 378 LEU ARG GLU ASP GLU PHE HIS ILE SER VAL ILE ARG GLY SEQRES 4 A 378 GLY LEU SER ASN MET LEU PHE GLN CYS SER LEU PRO ASP SEQRES 5 A 378 THR THR ALA THR LEU GLY ASP GLU PRO ARG LYS VAL LEU SEQRES 6 A 378 LEU ARG LEU TYR GLY ALA ILE LEU GLN MET ARG SER CYS SEQRES 7 A 378 ASN LYS GLU GLY SER GLU GLN ALA GLN LYS GLU ASN GLU SEQRES 8 A 378 PHE GLN GLY ALA GLU ALA MET VAL LEU GLU SER VAL MET SEQRES 9 A 378 PHE ALA ILE LEU ALA GLU ARG SER LEU GLY PRO LYS LEU SEQRES 10 A 378 TYR GLY ILE PHE PRO GLN GLY ARG LEU GLU GLN PHE ILE SEQRES 11 A 378 PRO SER ARG ARG LEU ASP THR GLU GLU LEU SER LEU PRO SEQRES 12 A 378 ASP ILE SER ALA GLU ILE ALA GLU LYS MET ALA THR PHE SEQRES 13 A 378 HIS GLY MET LYS MET PRO PHE ASN LYS GLU PRO LYS TRP SEQRES 14 A 378 LEU PHE GLY THR MET GLU LYS TYR LEU LYS GLU VAL LEU SEQRES 15 A 378 ARG ILE LYS PHE THR GLU GLU SER ARG ILE LYS LYS LEU SEQRES 16 A 378 HIS LYS LEU LEU SER TYR ASN LEU PRO LEU GLU LEU GLU SEQRES 17 A 378 ASN LEU ARG SER LEU LEU GLU SER THR PRO SER PRO VAL SEQRES 18 A 378 VAL PHE CYS HIS ASN ASP CYS GLN GLU GLY ASN ILE LEU SEQRES 19 A 378 LEU LEU GLU GLY ARG GLU ASN SER GLU LYS GLN LYS LEU SEQRES 20 A 378 MET LEU ILE ASP PHE GLU TYR SER SER TYR ASN TYR ARG SEQRES 21 A 378 GLY PHE ASP ILE GLY ASN HIS PHE CYS GLU TRP MET TYR SEQRES 22 A 378 ASP TYR SER TYR GLU LYS TYR PRO PHE PHE ARG ALA ASN SEQRES 23 A 378 ILE ARG LYS TYR PRO THR LYS LYS GLN GLN LEU HIS PHE SEQRES 24 A 378 ILE SER SER TYR LEU PRO ALA PHE GLN ASN ASP PHE GLU SEQRES 25 A 378 ASN LEU SER THR GLU GLU LYS SER ILE ILE LYS GLU GLU SEQRES 26 A 378 MET LEU LEU GLU VAL ASN ARG PHE ALA LEU ALA SER HIS SEQRES 27 A 378 PHE LEU TRP GLY LEU TRP SER ILE VAL GLN ALA LYS ILE SEQRES 28 A 378 SER SER ILE GLU PHE GLY TYR MET ASP TYR ALA GLN ALA SEQRES 29 A 378 ARG PHE ASP ALA TYR PHE HIS GLN LYS ARG LYS LEU GLY SEQRES 30 A 378 VAL SEQRES 1 B 378 ASP GLU GLN PRO GLU PRO ARG THR ARG ARG ARG ALA TYR SEQRES 2 B 378 LEU TRP CYS LYS GLU PHE LEU PRO GLY ALA TRP ARG GLY SEQRES 3 B 378 LEU ARG GLU ASP GLU PHE HIS ILE SER VAL ILE ARG GLY SEQRES 4 B 378 GLY LEU SER ASN MET LEU PHE GLN CYS SER LEU PRO ASP SEQRES 5 B 378 THR THR ALA THR LEU GLY ASP GLU PRO ARG LYS VAL LEU SEQRES 6 B 378 LEU ARG LEU TYR GLY ALA ILE LEU GLN MET ARG SER CYS SEQRES 7 B 378 ASN LYS GLU GLY SER GLU GLN ALA GLN LYS GLU ASN GLU SEQRES 8 B 378 PHE GLN GLY ALA GLU ALA MET VAL LEU GLU SER VAL MET SEQRES 9 B 378 PHE ALA ILE LEU ALA GLU ARG SER LEU GLY PRO LYS LEU SEQRES 10 B 378 TYR GLY ILE PHE PRO GLN GLY ARG LEU GLU GLN PHE ILE SEQRES 11 B 378 PRO SER ARG ARG LEU ASP THR GLU GLU LEU SER LEU PRO SEQRES 12 B 378 ASP ILE SER ALA GLU ILE ALA GLU LYS MET ALA THR PHE SEQRES 13 B 378 HIS GLY MET LYS MET PRO PHE ASN LYS GLU PRO LYS TRP SEQRES 14 B 378 LEU PHE GLY THR MET GLU LYS TYR LEU LYS GLU VAL LEU SEQRES 15 B 378 ARG ILE LYS PHE THR GLU GLU SER ARG ILE LYS LYS LEU SEQRES 16 B 378 HIS LYS LEU LEU SER TYR ASN LEU PRO LEU GLU LEU GLU SEQRES 17 B 378 ASN LEU ARG SER LEU LEU GLU SER THR PRO SER PRO VAL SEQRES 18 B 378 VAL PHE CYS HIS ASN ASP CYS GLN GLU GLY ASN ILE LEU SEQRES 19 B 378 LEU LEU GLU GLY ARG GLU ASN SER GLU LYS GLN LYS LEU SEQRES 20 B 378 MET LEU ILE ASP PHE GLU TYR SER SER TYR ASN TYR ARG SEQRES 21 B 378 GLY PHE ASP ILE GLY ASN HIS PHE CYS GLU TRP MET TYR SEQRES 22 B 378 ASP TYR SER TYR GLU LYS TYR PRO PHE PHE ARG ALA ASN SEQRES 23 B 378 ILE ARG LYS TYR PRO THR LYS LYS GLN GLN LEU HIS PHE SEQRES 24 B 378 ILE SER SER TYR LEU PRO ALA PHE GLN ASN ASP PHE GLU SEQRES 25 B 378 ASN LEU SER THR GLU GLU LYS SER ILE ILE LYS GLU GLU SEQRES 26 B 378 MET LEU LEU GLU VAL ASN ARG PHE ALA LEU ALA SER HIS SEQRES 27 B 378 PHE LEU TRP GLY LEU TRP SER ILE VAL GLN ALA LYS ILE SEQRES 28 B 378 SER SER ILE GLU PHE GLY TYR MET ASP TYR ALA GLN ALA SEQRES 29 B 378 ARG PHE ASP ALA TYR PHE HIS GLN LYS ARG LYS LEU GLY SEQRES 30 B 378 VAL HET EDO A1458 4 HET EDO A1459 4 HET EDO A1460 4 HET EDO A1461 4 HET EDO A1462 4 HET JH5 A1463 20 HET EDO B1458 4 HET JH5 B1459 20 HET JH5 B1460 20 HETNAM EDO 1,2-ETHANEDIOL HETNAM JH5 1-BENZYL-4-(BENZYLAMINO)-1H-1,2,4-TRIAZOL-4-IUM HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 8 JH5 3(C16 H17 N4 1+) FORMUL 12 HOH *269(H2 O) HELIX 1 1 GLU A 84 LEU A 99 1 16 HELIX 2 2 PRO A 100 LEU A 106 5 7 HELIX 3 3 ARG A 107 PHE A 111 5 5 HELIX 4 4 GLU A 175 ARG A 190 1 16 HELIX 5 5 ASP A 215 SER A 220 5 6 HELIX 6 6 LEU A 221 GLY A 237 1 17 HELIX 7 7 LYS A 247 ILE A 263 1 17 HELIX 8 8 GLU A 267 SER A 279 1 13 HELIX 9 9 ASN A 281 SER A 295 1 15 HELIX 10 10 GLN A 308 GLY A 310 5 3 HELIX 11 11 ARG A 339 GLU A 349 1 11 HELIX 12 12 ILE A 366 TYR A 369 5 4 HELIX 13 13 THR A 371 GLN A 387 1 17 HELIX 14 14 SER A 394 SER A 431 1 38 HELIX 15 15 GLY A 436 GLY A 456 1 21 HELIX 16 16 GLU B 84 LEU B 99 1 16 HELIX 17 17 PRO B 100 ARG B 104 5 5 HELIX 18 18 ARG B 107 PHE B 111 5 5 HELIX 19 19 GLU B 175 ARG B 190 1 16 HELIX 20 20 ASP B 215 SER B 220 5 6 HELIX 21 21 LEU B 221 GLY B 237 1 17 HELIX 22 22 LYS B 247 ILE B 263 1 17 HELIX 23 23 GLU B 267 SER B 279 1 13 HELIX 24 24 ASN B 281 SER B 295 1 15 HELIX 25 25 GLN B 308 GLY B 310 5 3 HELIX 26 26 ARG B 339 GLU B 349 1 11 HELIX 27 27 ILE B 366 TYR B 369 5 4 HELIX 28 28 THR B 371 GLN B 387 1 17 HELIX 29 29 SER B 394 SER B 431 1 38 HELIX 30 30 GLY B 436 GLY B 456 1 21 SHEET 1 AA 5 HIS A 112 ARG A 117 0 SHEET 2 AA 5 MET A 123 SER A 128 -1 O LEU A 124 N ILE A 116 SHEET 3 AA 5 LYS A 142 LEU A 147 -1 O VAL A 143 N CYS A 127 SHEET 4 AA 5 GLY A 203 GLN A 207 -1 O ARG A 204 N ARG A 146 SHEET 5 AA 5 LEU A 196 PHE A 200 -1 N TYR A 197 O LEU A 205 SHEET 1 AB 3 SER A 211 ARG A 213 0 SHEET 2 AB 3 ILE A 312 LEU A 315 -1 O LEU A 314 N ARG A 212 SHEET 3 AB 3 LEU A 326 LEU A 328 -1 O MET A 327 N LEU A 313 SHEET 1 AC 2 VAL A 300 CYS A 303 0 SHEET 2 AC 2 SER A 335 TYR A 338 -1 O SER A 335 N CYS A 303 SHEET 1 AD 2 TYR A 352 ASP A 353 0 SHEET 2 AD 2 ARG A 363 ALA A 364 -1 O ARG A 363 N ASP A 353 SHEET 1 BA 5 HIS B 112 ARG B 117 0 SHEET 2 BA 5 MET B 123 SER B 128 -1 O LEU B 124 N ILE B 116 SHEET 3 BA 5 LYS B 142 LEU B 147 -1 O VAL B 143 N CYS B 127 SHEET 4 BA 5 GLY B 203 GLN B 207 -1 O ARG B 204 N ARG B 146 SHEET 5 BA 5 LEU B 196 PHE B 200 -1 N TYR B 197 O LEU B 205 SHEET 1 BB 3 SER B 211 ARG B 213 0 SHEET 2 BB 3 ILE B 312 LEU B 315 -1 O LEU B 314 N ARG B 212 SHEET 3 BB 3 LEU B 326 LEU B 328 -1 O MET B 327 N LEU B 313 SHEET 1 BC 2 VAL B 300 CYS B 303 0 SHEET 2 BC 2 SER B 335 TYR B 338 -1 O SER B 335 N CYS B 303 SHEET 1 BD 2 TYR B 352 ASP B 353 0 SHEET 2 BD 2 ARG B 363 ALA B 364 -1 O ARG B 363 N ASP B 353 CISPEP 1 TYR A 359 PRO A 360 0 9.75 CISPEP 2 TYR B 359 PRO B 360 0 8.35 SITE 1 AC1 2 ILE A 209 SER A 211 SITE 1 AC2 6 ARG A 190 LYS A 239 MET A 240 PRO A 241 SITE 2 AC2 6 LEU B 196 TYR B 197 SITE 1 AC3 2 LYS A 264 LYS A 429 SITE 1 AC4 5 ILE A 401 GLU A 404 MET A 405 GLU A 408 SITE 2 AC4 5 HOH A2112 SITE 1 AC5 6 TYR A 92 LYS A 96 LEU A 106 GLU A 403 SITE 2 AC5 6 GLU A 404 HOH A2007 SITE 1 AC6 4 TYR B 352 ILE B 366 ALA B 443 ALA B 447 SITE 1 AC7 9 ASP A 306 GLN A 308 TYR A 333 TYR A 354 SITE 2 AC7 9 TRP A 420 TRP A 423 PHE A 435 TYR A 440 SITE 3 AC7 9 HOH A2131 SITE 1 AC8 6 ARG B 117 ASN B 122 GLY B 310 ASN B 311 SITE 2 AC8 6 ASP B 330 GLU B 332 SITE 1 AC9 9 ASP B 306 GLN B 308 TYR B 333 GLU B 349 SITE 2 AC9 9 TYR B 354 TRP B 420 TRP B 423 PHE B 435 SITE 3 AC9 9 TYR B 440 CRYST1 56.129 120.180 132.393 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017816 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007553 0.00000 MTRIX1 1 0.263300 0.855900 0.445100 3.29600 1 MTRIX2 1 0.856300 -0.419800 0.300800 12.53000 1 MTRIX3 1 0.444300 0.301900 -0.843000 -32.87000 1