data_5AFZ # _entry.id 5AFZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.384 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5AFZ pdb_00005afz 10.2210/pdb5afz/pdb PDBE EBI-62849 ? ? WWPDB D_1290062849 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-26 2 'Structure model' 1 1 2015-09-23 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 2 0 2022-12-07 5 'Structure model' 2 1 2024-01-31 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' Other 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' Advisory 7 4 'Structure model' 'Atomic model' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Polymer sequence' 12 4 'Structure model' 'Source and taxonomy' 13 4 'Structure model' 'Structure summary' 14 5 'Structure model' 'Data collection' 15 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site 9 3 'Structure model' struct_site_gen 10 4 'Structure model' atom_site 11 4 'Structure model' atom_site_anisotrop 12 4 'Structure model' chem_comp 13 4 'Structure model' database_2 14 4 'Structure model' entity 15 4 'Structure model' entity_name_com 16 4 'Structure model' entity_poly 17 4 'Structure model' entity_poly_seq 18 4 'Structure model' entity_src_nat 19 4 'Structure model' pdbx_entity_nonpoly 20 4 'Structure model' pdbx_entity_src_syn 21 4 'Structure model' pdbx_nonpoly_scheme 22 4 'Structure model' pdbx_poly_seq_scheme 23 4 'Structure model' pdbx_struct_assembly_gen 24 4 'Structure model' pdbx_struct_conn_angle 25 4 'Structure model' pdbx_struct_mod_residue 26 4 'Structure model' pdbx_struct_special_symmetry 27 4 'Structure model' pdbx_unobs_or_zero_occ_residues 28 4 'Structure model' struct_asym 29 4 'Structure model' struct_conn 30 4 'Structure model' struct_ref 31 4 'Structure model' struct_ref_seq 32 5 'Structure model' chem_comp_atom 33 5 'Structure model' chem_comp_bond 34 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_database_status.status_code_sf' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_PDB_ins_code' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.value' 20 3 'Structure model' '_struct_conn.conn_type_id' 21 3 'Structure model' '_struct_conn.id' 22 3 'Structure model' '_struct_conn.pdbx_dist_value' 23 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 3 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 25 3 'Structure model' '_struct_conn.pdbx_ptnr2_PDB_ins_code' 26 3 'Structure model' '_struct_conn.pdbx_role' 27 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 4 'Structure model' '_atom_site.B_iso_or_equiv' 42 4 'Structure model' '_atom_site.Cartn_x' 43 4 'Structure model' '_atom_site.Cartn_y' 44 4 'Structure model' '_atom_site.Cartn_z' 45 4 'Structure model' '_atom_site.auth_asym_id' 46 4 'Structure model' '_atom_site.auth_atom_id' 47 4 'Structure model' '_atom_site.auth_comp_id' 48 4 'Structure model' '_atom_site.auth_seq_id' 49 4 'Structure model' '_atom_site.group_PDB' 50 4 'Structure model' '_atom_site.label_alt_id' 51 4 'Structure model' '_atom_site.label_asym_id' 52 4 'Structure model' '_atom_site.label_atom_id' 53 4 'Structure model' '_atom_site.label_comp_id' 54 4 'Structure model' '_atom_site.label_entity_id' 55 4 'Structure model' '_atom_site.label_seq_id' 56 4 'Structure model' '_atom_site.occupancy' 57 4 'Structure model' '_atom_site.pdbx_PDB_ins_code' 58 4 'Structure model' '_atom_site.type_symbol' 59 4 'Structure model' '_atom_site_anisotrop.U[1][1]' 60 4 'Structure model' '_atom_site_anisotrop.U[1][2]' 61 4 'Structure model' '_atom_site_anisotrop.U[1][3]' 62 4 'Structure model' '_atom_site_anisotrop.U[2][2]' 63 4 'Structure model' '_atom_site_anisotrop.U[2][3]' 64 4 'Structure model' '_atom_site_anisotrop.U[3][3]' 65 4 'Structure model' '_atom_site_anisotrop.pdbx_PDB_ins_code' 66 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 67 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 68 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 69 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 70 4 'Structure model' '_atom_site_anisotrop.pdbx_label_alt_id' 71 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 72 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 73 4 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 74 4 'Structure model' '_atom_site_anisotrop.pdbx_label_seq_id' 75 4 'Structure model' '_atom_site_anisotrop.type_symbol' 76 4 'Structure model' '_chem_comp.pdbx_synonyms' 77 4 'Structure model' '_database_2.pdbx_DOI' 78 4 'Structure model' '_database_2.pdbx_database_accession' 79 4 'Structure model' '_entity_poly.nstd_monomer' 80 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 81 4 'Structure model' '_entity_poly_seq.mon_id' 82 4 'Structure model' '_entity_src_nat.common_name' 83 4 'Structure model' '_entity_src_nat.pdbx_beg_seq_num' 84 4 'Structure model' '_entity_src_nat.pdbx_end_seq_num' 85 4 'Structure model' '_entity_src_nat.pdbx_organism_scientific' 86 4 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 87 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 88 4 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 89 4 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 90 4 'Structure model' '_pdbx_poly_seq_scheme.auth_mon_id' 91 4 'Structure model' '_pdbx_poly_seq_scheme.auth_seq_num' 92 4 'Structure model' '_pdbx_poly_seq_scheme.mon_id' 93 4 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 94 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 95 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 96 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 97 4 'Structure model' '_pdbx_struct_mod_residue.PDB_ins_code' 98 4 'Structure model' '_pdbx_struct_mod_residue.auth_asym_id' 99 4 'Structure model' '_pdbx_struct_mod_residue.auth_comp_id' 100 4 'Structure model' '_pdbx_struct_mod_residue.auth_seq_id' 101 4 'Structure model' '_pdbx_struct_mod_residue.details' 102 4 'Structure model' '_pdbx_struct_mod_residue.label_asym_id' 103 4 'Structure model' '_pdbx_struct_mod_residue.label_comp_id' 104 4 'Structure model' '_pdbx_struct_mod_residue.label_seq_id' 105 4 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id' 106 4 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 107 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 108 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 109 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 110 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 111 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 112 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 113 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 114 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 115 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 116 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 117 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 118 4 'Structure model' '_struct_ref.db_code' 119 4 'Structure model' '_struct_ref.pdbx_align_begin' 120 4 'Structure model' '_struct_ref.pdbx_db_accession' 121 4 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 122 4 'Structure model' '_struct_ref_seq.pdbx_db_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AFZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-01-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5AF9 unspecified 'THROMBIN IN COMPLEX WITH 4-METHOXY-N-(2-PYRIDINYL) BENZAMIDE' PDB 5AFY unspecified 'THROMBIN IN COMPLEX WITH 3-CHLORO-BENZAMIDE' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ruehmann, E.' 1 'Heine, A.' 2 'Klebe, G.' 3 # _citation.id primary _citation.title 'Fragments Can Bind Either More Enthalpy or Entropy-Driven: Crystal Structures and Residual Hydration Pattern Suggest Why.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 58 _citation.page_first 6960 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26270568 _citation.pdbx_database_id_DOI 10.1021/ACS.JMEDCHEM.5B00812 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ruehmann, E.' 1 ? primary 'Betz, M.' 2 ? primary 'Heine, A.' 3 ? primary 'Klebe, G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Prothrombin 29651.105 1 3.4.21.5 ? 'RESIDUES 364-621' ? 2 polymer syn Hirudin-2 1548.580 1 ? ? ? 'HIRUDIN (54-65) (SULFATED)' 3 polymer nat Prothrombin 3432.829 1 3.4.21.5 ? 'RESIDUES 333-361' ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn 'N-(BENZYLSULFONYL)-D-PHENYLALANYL-N-(4-CARBAMIMIDOYLBENZYL)GLYCINAMIDE' 507.605 1 ? ? ? ? 6 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 7 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 8 water nat water 18.015 219 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Coagulation factor II' 2 'Hirudin II' 3 'Coagulation factor II' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; H ? 2 'polypeptide(L)' no yes 'GDFEEIPEE(TYS)LQ' GDFEEIPEEYLQ I ? 3 'polypeptide(L)' no no EADCGLRPLFEKKSLEDKTERELLESYID EADCGLRPLFEKKSLEDKTERELLESYID L ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SODIUM ION' NA 5 'N-(BENZYLSULFONYL)-D-PHENYLALANYL-N-(4-CARBAMIMIDOYLBENZYL)GLYCINAMIDE' UET 6 'PHOSPHATE ION' PO4 7 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 ALA n 1 8 GLU n 1 9 ILE n 1 10 GLY n 1 11 MET n 1 12 SER n 1 13 PRO n 1 14 TRP n 1 15 GLN n 1 16 VAL n 1 17 MET n 1 18 LEU n 1 19 PHE n 1 20 ARG n 1 21 LYS n 1 22 SER n 1 23 PRO n 1 24 GLN n 1 25 GLU n 1 26 LEU n 1 27 LEU n 1 28 CYS n 1 29 GLY n 1 30 ALA n 1 31 SER n 1 32 LEU n 1 33 ILE n 1 34 SER n 1 35 ASP n 1 36 ARG n 1 37 TRP n 1 38 VAL n 1 39 LEU n 1 40 THR n 1 41 ALA n 1 42 ALA n 1 43 HIS n 1 44 CYS n 1 45 LEU n 1 46 LEU n 1 47 TYR n 1 48 PRO n 1 49 PRO n 1 50 TRP n 1 51 ASP n 1 52 LYS n 1 53 ASN n 1 54 PHE n 1 55 THR n 1 56 GLU n 1 57 ASN n 1 58 ASP n 1 59 LEU n 1 60 LEU n 1 61 VAL n 1 62 ARG n 1 63 ILE n 1 64 GLY n 1 65 LYS n 1 66 HIS n 1 67 SER n 1 68 ARG n 1 69 THR n 1 70 ARG n 1 71 TYR n 1 72 GLU n 1 73 ARG n 1 74 ASN n 1 75 ILE n 1 76 GLU n 1 77 LYS n 1 78 ILE n 1 79 SER n 1 80 MET n 1 81 LEU n 1 82 GLU n 1 83 LYS n 1 84 ILE n 1 85 TYR n 1 86 ILE n 1 87 HIS n 1 88 PRO n 1 89 ARG n 1 90 TYR n 1 91 ASN n 1 92 TRP n 1 93 ARG n 1 94 GLU n 1 95 ASN n 1 96 LEU n 1 97 ASP n 1 98 ARG n 1 99 ASP n 1 100 ILE n 1 101 ALA n 1 102 LEU n 1 103 MET n 1 104 LYS n 1 105 LEU n 1 106 LYS n 1 107 LYS n 1 108 PRO n 1 109 VAL n 1 110 ALA n 1 111 PHE n 1 112 SER n 1 113 ASP n 1 114 TYR n 1 115 ILE n 1 116 HIS n 1 117 PRO n 1 118 VAL n 1 119 CYS n 1 120 LEU n 1 121 PRO n 1 122 ASP n 1 123 ARG n 1 124 GLU n 1 125 THR n 1 126 ALA n 1 127 ALA n 1 128 SER n 1 129 LEU n 1 130 LEU n 1 131 GLN n 1 132 ALA n 1 133 GLY n 1 134 TYR n 1 135 LYS n 1 136 GLY n 1 137 ARG n 1 138 VAL n 1 139 THR n 1 140 GLY n 1 141 TRP n 1 142 GLY n 1 143 ASN n 1 144 LEU n 1 145 LYS n 1 146 GLU n 1 147 THR n 1 148 TRP n 1 149 THR n 1 150 ALA n 1 151 ASN n 1 152 VAL n 1 153 GLY n 1 154 LYS n 1 155 GLY n 1 156 GLN n 1 157 PRO n 1 158 SER n 1 159 VAL n 1 160 LEU n 1 161 GLN n 1 162 VAL n 1 163 VAL n 1 164 ASN n 1 165 LEU n 1 166 PRO n 1 167 ILE n 1 168 VAL n 1 169 GLU n 1 170 ARG n 1 171 PRO n 1 172 VAL n 1 173 CYS n 1 174 LYS n 1 175 ASP n 1 176 SER n 1 177 THR n 1 178 ARG n 1 179 ILE n 1 180 ARG n 1 181 ILE n 1 182 THR n 1 183 ASP n 1 184 ASN n 1 185 MET n 1 186 PHE n 1 187 CYS n 1 188 ALA n 1 189 GLY n 1 190 TYR n 1 191 LYS n 1 192 PRO n 1 193 ASP n 1 194 GLU n 1 195 GLY n 1 196 LYS n 1 197 ARG n 1 198 GLY n 1 199 ASP n 1 200 ALA n 1 201 CYS n 1 202 GLU n 1 203 GLY n 1 204 ASP n 1 205 SER n 1 206 GLY n 1 207 GLY n 1 208 PRO n 1 209 PHE n 1 210 VAL n 1 211 MET n 1 212 LYS n 1 213 SER n 1 214 PRO n 1 215 PHE n 1 216 ASN n 1 217 ASN n 1 218 ARG n 1 219 TRP n 1 220 TYR n 1 221 GLN n 1 222 MET n 1 223 GLY n 1 224 ILE n 1 225 VAL n 1 226 SER n 1 227 TRP n 1 228 GLY n 1 229 GLU n 1 230 GLY n 1 231 CYS n 1 232 ASP n 1 233 ARG n 1 234 ASP n 1 235 GLY n 1 236 LYS n 1 237 TYR n 1 238 GLY n 1 239 PHE n 1 240 TYR n 1 241 THR n 1 242 HIS n 1 243 VAL n 1 244 PHE n 1 245 ARG n 1 246 LEU n 1 247 LYS n 1 248 LYS n 1 249 TRP n 1 250 ILE n 1 251 GLN n 1 252 LYS n 1 253 VAL n 1 254 ILE n 1 255 ASP n 1 256 GLN n 1 257 PHE n 1 258 GLY n 2 1 GLY n 2 2 ASP n 2 3 PHE n 2 4 GLU n 2 5 GLU n 2 6 ILE n 2 7 PRO n 2 8 GLU n 2 9 GLU n 2 10 TYS n 2 11 LEU n 2 12 GLN n 3 1 GLU n 3 2 ALA n 3 3 ASP n 3 4 CYS n 3 5 GLY n 3 6 LEU n 3 7 ARG n 3 8 PRO n 3 9 LEU n 3 10 PHE n 3 11 GLU n 3 12 LYS n 3 13 LYS n 3 14 SER n 3 15 LEU n 3 16 GLU n 3 17 ASP n 3 18 LYS n 3 19 THR n 3 20 GLU n 3 21 ARG n 3 22 GLU n 3 23 LEU n 3 24 LEU n 3 25 GLU n 3 26 SER n 3 27 TYR n 3 28 ILE n 3 29 ASP n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 258 human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'PURIFIED FROM HUMAN BLOOD PLASMA' 3 1 sample 1 29 human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'PURIFIED FROM HUMAN BLOOD PLASMA' # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Hirudo medicinalis' _pdbx_entity_src_syn.organism_common_name 'medicinal leech' _pdbx_entity_src_syn.ncbi_taxonomy_id 6421 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252 UET non-polymer . 'N-(BENZYLSULFONYL)-D-PHENYLALANYL-N-(4-CARBAMIMIDOYLBENZYL)GLYCINAMIDE' ? 'C26 H29 N5 O4 S' 507.605 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE H . n A 1 2 VAL 2 17 17 VAL VAL H . n A 1 3 GLU 3 18 18 GLU GLU H . n A 1 4 GLY 4 19 19 GLY GLY H . n A 1 5 SER 5 20 20 SER SER H . n A 1 6 ASP 6 21 21 ASP ASP H . n A 1 7 ALA 7 22 22 ALA ALA H . n A 1 8 GLU 8 23 23 GLU GLU H . n A 1 9 ILE 9 24 24 ILE ILE H . n A 1 10 GLY 10 25 25 GLY GLY H . n A 1 11 MET 11 26 26 MET MET H . n A 1 12 SER 12 27 27 SER SER H . n A 1 13 PRO 13 28 28 PRO PRO H . n A 1 14 TRP 14 29 29 TRP TRP H . n A 1 15 GLN 15 30 30 GLN GLN H . n A 1 16 VAL 16 31 31 VAL VAL H . n A 1 17 MET 17 32 32 MET MET H . n A 1 18 LEU 18 33 33 LEU LEU H . n A 1 19 PHE 19 34 34 PHE PHE H . n A 1 20 ARG 20 35 35 ARG ARG H . n A 1 21 LYS 21 36 36 LYS LYS H . n A 1 22 SER 22 36 36 SER SER H A n A 1 23 PRO 23 37 37 PRO PRO H . n A 1 24 GLN 24 38 38 GLN GLN H . n A 1 25 GLU 25 39 39 GLU GLU H . n A 1 26 LEU 26 40 40 LEU LEU H . n A 1 27 LEU 27 41 41 LEU LEU H . n A 1 28 CYS 28 42 42 CYS CYS H . n A 1 29 GLY 29 43 43 GLY GLY H . n A 1 30 ALA 30 44 44 ALA ALA H . n A 1 31 SER 31 45 45 SER SER H . n A 1 32 LEU 32 46 46 LEU LEU H . n A 1 33 ILE 33 47 47 ILE ILE H . n A 1 34 SER 34 48 48 SER SER H . n A 1 35 ASP 35 49 49 ASP ASP H . n A 1 36 ARG 36 50 50 ARG ARG H . n A 1 37 TRP 37 51 51 TRP TRP H . n A 1 38 VAL 38 52 52 VAL VAL H . n A 1 39 LEU 39 53 53 LEU LEU H . n A 1 40 THR 40 54 54 THR THR H . n A 1 41 ALA 41 55 55 ALA ALA H . n A 1 42 ALA 42 56 56 ALA ALA H . n A 1 43 HIS 43 57 57 HIS HIS H . n A 1 44 CYS 44 58 58 CYS CYS H . n A 1 45 LEU 45 59 59 LEU LEU H . n A 1 46 LEU 46 60 60 LEU LEU H . n A 1 47 TYR 47 60 60 TYR TYR H A n A 1 48 PRO 48 60 60 PRO PRO H B n A 1 49 PRO 49 60 60 PRO PRO H C n A 1 50 TRP 50 60 60 TRP TRP H D n A 1 51 ASP 51 60 60 ASP ASP H E n A 1 52 LYS 52 60 60 LYS LYS H F n A 1 53 ASN 53 60 60 ASN ASN H G n A 1 54 PHE 54 60 60 PHE PHE H H n A 1 55 THR 55 60 60 THR THR H I n A 1 56 GLU 56 61 61 GLU GLU H . n A 1 57 ASN 57 62 62 ASN ASN H . n A 1 58 ASP 58 63 63 ASP ASP H . n A 1 59 LEU 59 64 64 LEU LEU H . n A 1 60 LEU 60 65 65 LEU LEU H . n A 1 61 VAL 61 66 66 VAL VAL H . n A 1 62 ARG 62 67 67 ARG ARG H . n A 1 63 ILE 63 68 68 ILE ILE H . n A 1 64 GLY 64 69 69 GLY GLY H . n A 1 65 LYS 65 70 70 LYS LYS H . n A 1 66 HIS 66 71 71 HIS HIS H . n A 1 67 SER 67 72 72 SER SER H . n A 1 68 ARG 68 73 73 ARG ARG H . n A 1 69 THR 69 74 74 THR THR H . n A 1 70 ARG 70 75 75 ARG ARG H . n A 1 71 TYR 71 76 76 TYR TYR H . n A 1 72 GLU 72 77 77 GLU GLU H . n A 1 73 ARG 73 77 77 ARG ARG H A n A 1 74 ASN 74 78 78 ASN ASN H . n A 1 75 ILE 75 79 79 ILE ILE H . n A 1 76 GLU 76 80 80 GLU GLU H . n A 1 77 LYS 77 81 81 LYS LYS H . n A 1 78 ILE 78 82 82 ILE ILE H . n A 1 79 SER 79 83 83 SER SER H . n A 1 80 MET 80 84 84 MET MET H . n A 1 81 LEU 81 85 85 LEU LEU H . n A 1 82 GLU 82 86 86 GLU GLU H . n A 1 83 LYS 83 87 87 LYS LYS H . n A 1 84 ILE 84 88 88 ILE ILE H . n A 1 85 TYR 85 89 89 TYR TYR H . n A 1 86 ILE 86 90 90 ILE ILE H . n A 1 87 HIS 87 91 91 HIS HIS H . n A 1 88 PRO 88 92 92 PRO PRO H . n A 1 89 ARG 89 93 93 ARG ARG H . n A 1 90 TYR 90 94 94 TYR TYR H . n A 1 91 ASN 91 95 95 ASN ASN H . n A 1 92 TRP 92 96 96 TRP TRP H . n A 1 93 ARG 93 97 97 ARG ARG H . n A 1 94 GLU 94 97 97 GLU GLU H A n A 1 95 ASN 95 98 98 ASN ASN H . n A 1 96 LEU 96 99 99 LEU LEU H . n A 1 97 ASP 97 100 100 ASP ASP H . n A 1 98 ARG 98 101 101 ARG ARG H . n A 1 99 ASP 99 102 102 ASP ASP H . n A 1 100 ILE 100 103 103 ILE ILE H . n A 1 101 ALA 101 104 104 ALA ALA H . n A 1 102 LEU 102 105 105 LEU LEU H . n A 1 103 MET 103 106 106 MET MET H . n A 1 104 LYS 104 107 107 LYS LYS H . n A 1 105 LEU 105 108 108 LEU LEU H . n A 1 106 LYS 106 109 109 LYS LYS H . n A 1 107 LYS 107 110 110 LYS LYS H . n A 1 108 PRO 108 111 111 PRO PRO H . n A 1 109 VAL 109 112 112 VAL VAL H . n A 1 110 ALA 110 113 113 ALA ALA H . n A 1 111 PHE 111 114 114 PHE PHE H . n A 1 112 SER 112 115 115 SER SER H . n A 1 113 ASP 113 116 116 ASP ASP H . n A 1 114 TYR 114 117 117 TYR TYR H . n A 1 115 ILE 115 118 118 ILE ILE H . n A 1 116 HIS 116 119 119 HIS HIS H . n A 1 117 PRO 117 120 120 PRO PRO H . n A 1 118 VAL 118 121 121 VAL VAL H . n A 1 119 CYS 119 122 122 CYS CYS H . n A 1 120 LEU 120 123 123 LEU LEU H . n A 1 121 PRO 121 124 124 PRO PRO H . n A 1 122 ASP 122 125 125 ASP ASP H . n A 1 123 ARG 123 126 126 ARG ARG H . n A 1 124 GLU 124 127 127 GLU GLU H . n A 1 125 THR 125 128 128 THR THR H . n A 1 126 ALA 126 129 129 ALA ALA H . n A 1 127 ALA 127 129 129 ALA ALA H A n A 1 128 SER 128 129 129 SER SER H B n A 1 129 LEU 129 129 129 LEU LEU H C n A 1 130 LEU 130 130 130 LEU LEU H . n A 1 131 GLN 131 131 131 GLN GLN H . n A 1 132 ALA 132 132 132 ALA ALA H . n A 1 133 GLY 133 133 133 GLY GLY H . n A 1 134 TYR 134 134 134 TYR TYR H . n A 1 135 LYS 135 135 135 LYS LYS H . n A 1 136 GLY 136 136 136 GLY GLY H . n A 1 137 ARG 137 137 137 ARG ARG H . n A 1 138 VAL 138 138 138 VAL VAL H . n A 1 139 THR 139 139 139 THR THR H . n A 1 140 GLY 140 140 140 GLY GLY H . n A 1 141 TRP 141 141 141 TRP TRP H . n A 1 142 GLY 142 142 142 GLY GLY H . n A 1 143 ASN 143 143 143 ASN ASN H . n A 1 144 LEU 144 144 144 LEU LEU H . n A 1 145 LYS 145 145 145 LYS LYS H . n A 1 146 GLU 146 146 146 GLU GLU H . n A 1 147 THR 147 147 147 THR THR H . n A 1 148 TRP 148 147 ? ? ? H A n A 1 149 THR 149 147 ? ? ? H B n A 1 150 ALA 150 147 ? ? ? H C n A 1 151 ASN 151 147 ? ? ? H D n A 1 152 VAL 152 147 ? ? ? H E n A 1 153 GLY 153 147 ? ? ? H F n A 1 154 LYS 154 147 ? ? ? H G n A 1 155 GLY 155 150 150 GLY GLY H . n A 1 156 GLN 156 151 151 GLN GLN H . n A 1 157 PRO 157 152 152 PRO PRO H . n A 1 158 SER 158 153 153 SER SER H . n A 1 159 VAL 159 154 154 VAL VAL H . n A 1 160 LEU 160 155 155 LEU LEU H . n A 1 161 GLN 161 156 156 GLN GLN H . n A 1 162 VAL 162 157 157 VAL VAL H . n A 1 163 VAL 163 158 158 VAL VAL H . n A 1 164 ASN 164 159 159 ASN ASN H . n A 1 165 LEU 165 160 160 LEU LEU H . n A 1 166 PRO 166 161 161 PRO PRO H . n A 1 167 ILE 167 162 162 ILE ILE H . n A 1 168 VAL 168 163 163 VAL VAL H . n A 1 169 GLU 169 164 164 GLU GLU H . n A 1 170 ARG 170 165 165 ARG ARG H . n A 1 171 PRO 171 166 166 PRO PRO H . n A 1 172 VAL 172 167 167 VAL VAL H . n A 1 173 CYS 173 168 168 CYS CYS H . n A 1 174 LYS 174 169 169 LYS LYS H . n A 1 175 ASP 175 170 170 ASP ASP H . n A 1 176 SER 176 171 171 SER SER H . n A 1 177 THR 177 172 172 THR THR H . n A 1 178 ARG 178 173 173 ARG ARG H . n A 1 179 ILE 179 174 174 ILE ILE H . n A 1 180 ARG 180 175 175 ARG ARG H . n A 1 181 ILE 181 176 176 ILE ILE H . n A 1 182 THR 182 177 177 THR THR H . n A 1 183 ASP 183 178 178 ASP ASP H . n A 1 184 ASN 184 179 179 ASN ASN H . n A 1 185 MET 185 180 180 MET MET H . n A 1 186 PHE 186 181 181 PHE PHE H . n A 1 187 CYS 187 182 182 CYS CYS H . n A 1 188 ALA 188 183 183 ALA ALA H . n A 1 189 GLY 189 184 184 GLY GLY H . n A 1 190 TYR 190 184 184 TYR TYR H A n A 1 191 LYS 191 185 185 LYS LYS H . n A 1 192 PRO 192 186 186 PRO PRO H . n A 1 193 ASP 193 186 186 ASP ASP H A n A 1 194 GLU 194 186 186 GLU GLU H B n A 1 195 GLY 195 186 186 GLY GLY H C n A 1 196 LYS 196 186 186 LYS LYS H D n A 1 197 ARG 197 187 187 ARG ARG H . n A 1 198 GLY 198 188 188 GLY GLY H . n A 1 199 ASP 199 189 189 ASP ASP H . n A 1 200 ALA 200 190 190 ALA ALA H . n A 1 201 CYS 201 191 191 CYS CYS H . n A 1 202 GLU 202 192 192 GLU GLU H . n A 1 203 GLY 203 193 193 GLY GLY H . n A 1 204 ASP 204 194 194 ASP ASP H . n A 1 205 SER 205 195 195 SER SER H . n A 1 206 GLY 206 196 196 GLY GLY H . n A 1 207 GLY 207 197 197 GLY GLY H . n A 1 208 PRO 208 198 198 PRO PRO H . n A 1 209 PHE 209 199 199 PHE PHE H . n A 1 210 VAL 210 200 200 VAL VAL H . n A 1 211 MET 211 201 201 MET MET H . n A 1 212 LYS 212 202 202 LYS LYS H . n A 1 213 SER 213 203 203 SER SER H . n A 1 214 PRO 214 204 204 PRO PRO H . n A 1 215 PHE 215 204 204 PHE PHE H A n A 1 216 ASN 216 204 204 ASN ASN H B n A 1 217 ASN 217 205 205 ASN ASN H . n A 1 218 ARG 218 206 206 ARG ARG H . n A 1 219 TRP 219 207 207 TRP TRP H . n A 1 220 TYR 220 208 208 TYR TYR H . n A 1 221 GLN 221 209 209 GLN GLN H . n A 1 222 MET 222 210 210 MET MET H . n A 1 223 GLY 223 211 211 GLY GLY H . n A 1 224 ILE 224 212 212 ILE ILE H . n A 1 225 VAL 225 213 213 VAL VAL H . n A 1 226 SER 226 214 214 SER SER H . n A 1 227 TRP 227 215 215 TRP TRP H . n A 1 228 GLY 228 216 216 GLY GLY H . n A 1 229 GLU 229 217 217 GLU GLU H . n A 1 230 GLY 230 219 219 GLY GLY H . n A 1 231 CYS 231 220 220 CYS CYS H . n A 1 232 ASP 232 221 221 ASP ASP H . n A 1 233 ARG 233 221 221 ARG ARG H A n A 1 234 ASP 234 222 222 ASP ASP H . n A 1 235 GLY 235 223 223 GLY GLY H . n A 1 236 LYS 236 224 224 LYS LYS H . n A 1 237 TYR 237 225 225 TYR TYR H . n A 1 238 GLY 238 226 226 GLY GLY H . n A 1 239 PHE 239 227 227 PHE PHE H . n A 1 240 TYR 240 228 228 TYR TYR H . n A 1 241 THR 241 229 229 THR THR H . n A 1 242 HIS 242 230 230 HIS HIS H . n A 1 243 VAL 243 231 231 VAL VAL H . n A 1 244 PHE 244 232 232 PHE PHE H . n A 1 245 ARG 245 233 233 ARG ARG H . n A 1 246 LEU 246 234 234 LEU LEU H . n A 1 247 LYS 247 235 235 LYS LYS H . n A 1 248 LYS 248 236 236 LYS LYS H . n A 1 249 TRP 249 237 237 TRP TRP H . n A 1 250 ILE 250 238 238 ILE ILE H . n A 1 251 GLN 251 239 239 GLN GLN H . n A 1 252 LYS 252 240 240 LYS LYS H . n A 1 253 VAL 253 241 241 VAL VAL H . n A 1 254 ILE 254 242 242 ILE ILE H . n A 1 255 ASP 255 243 243 ASP ASP H . n A 1 256 GLN 256 244 244 GLN GLN H . n A 1 257 PHE 257 245 245 PHE PHE H . n A 1 258 GLY 258 246 246 GLY GLY H . n B 2 1 GLY 1 554 ? ? ? I . n B 2 2 ASP 2 555 ? ? ? I . n B 2 3 PHE 3 556 556 PHE PHE I . n B 2 4 GLU 4 557 557 GLU GLU I . n B 2 5 GLU 5 558 558 GLU GLU I . n B 2 6 ILE 6 559 559 ILE ILE I . n B 2 7 PRO 7 560 560 PRO PRO I . n B 2 8 GLU 8 561 561 GLU GLU I . n B 2 9 GLU 9 562 562 GLU GLU I . n B 2 10 TYS 10 563 1565 TYS TYS I . n B 2 11 LEU 11 564 564 LEU LEU I . n B 2 12 GLN 12 565 ? ? ? I . n C 3 1 GLU 1 1 1 GLU GLU L C n C 3 2 ALA 2 1 1 ALA ALA L B n C 3 3 ASP 3 1 1 ASP ASP L A n C 3 4 CYS 4 1 1 CYS CYS L . n C 3 5 GLY 5 2 2 GLY GLY L . n C 3 6 LEU 6 3 3 LEU LEU L . n C 3 7 ARG 7 4 4 ARG ARG L . n C 3 8 PRO 8 5 5 PRO PRO L . n C 3 9 LEU 9 6 6 LEU LEU L . n C 3 10 PHE 10 7 7 PHE PHE L . n C 3 11 GLU 11 8 8 GLU GLU L . n C 3 12 LYS 12 9 9 LYS LYS L . n C 3 13 LYS 13 10 10 LYS LYS L . n C 3 14 SER 14 11 11 SER SER L . n C 3 15 LEU 15 12 12 LEU LEU L . n C 3 16 GLU 16 13 13 GLU GLU L . n C 3 17 ASP 17 14 14 ASP ASP L . n C 3 18 LYS 18 14 14 LYS LYS L A n C 3 19 THR 19 14 14 THR THR L B n C 3 20 GLU 20 14 14 GLU GLU L C n C 3 21 ARG 21 14 14 ARG ARG L D n C 3 22 GLU 22 14 14 GLU GLU L E n C 3 23 LEU 23 14 14 LEU LEU L F n C 3 24 LEU 24 14 14 LEU LEU L G n C 3 25 GLU 25 14 14 GLU GLU L H n C 3 26 SER 26 14 14 SER SER L I n C 3 27 TYR 27 14 14 TYR TYR L J n C 3 28 ILE 28 14 14 ILE ILE L K n C 3 29 ASP 29 15 ? ? ? L . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA 1 1246 1246 NA NA H . E 4 NA 1 1247 1247 NA NA H . F 5 UET 1 1248 1248 UET UET H . G 6 PO4 1 1249 1249 PO4 PO4 H . H 7 NAG 1 1250 1250 NAG NAG H . I 8 HOH 1 2001 2001 HOH HOH H . I 8 HOH 2 2002 2002 HOH HOH H . I 8 HOH 3 2003 2003 HOH HOH H . I 8 HOH 4 2004 2004 HOH HOH H . I 8 HOH 5 2005 2005 HOH HOH H . I 8 HOH 6 2006 2006 HOH HOH H . I 8 HOH 7 2007 2007 HOH HOH H . I 8 HOH 8 2008 2008 HOH HOH H . I 8 HOH 9 2009 2009 HOH HOH H . I 8 HOH 10 2010 2010 HOH HOH H . I 8 HOH 11 2011 2011 HOH HOH H . I 8 HOH 12 2012 2012 HOH HOH H . I 8 HOH 13 2013 2013 HOH HOH H . I 8 HOH 14 2014 2014 HOH HOH H . I 8 HOH 15 2015 2015 HOH HOH H . I 8 HOH 16 2016 2016 HOH HOH H . I 8 HOH 17 2017 2017 HOH HOH H . I 8 HOH 18 2018 2018 HOH HOH H . I 8 HOH 19 2019 2019 HOH HOH H . I 8 HOH 20 2020 2020 HOH HOH H . I 8 HOH 21 2021 2021 HOH HOH H . I 8 HOH 22 2022 2022 HOH HOH H . I 8 HOH 23 2023 2023 HOH HOH H . I 8 HOH 24 2024 2024 HOH HOH H . I 8 HOH 25 2025 2025 HOH HOH H . I 8 HOH 26 2026 2026 HOH HOH H . I 8 HOH 27 2027 2027 HOH HOH H . I 8 HOH 28 2028 2028 HOH HOH H . I 8 HOH 29 2029 2029 HOH HOH H . I 8 HOH 30 2030 2030 HOH HOH H . I 8 HOH 31 2031 2031 HOH HOH H . I 8 HOH 32 2032 2032 HOH HOH H . I 8 HOH 33 2033 2033 HOH HOH H . I 8 HOH 34 2034 2034 HOH HOH H . I 8 HOH 35 2035 2035 HOH HOH H . I 8 HOH 36 2036 2036 HOH HOH H . I 8 HOH 37 2037 2037 HOH HOH H . I 8 HOH 38 2038 2038 HOH HOH H . I 8 HOH 39 2039 2039 HOH HOH H . I 8 HOH 40 2040 2040 HOH HOH H . I 8 HOH 41 2041 2041 HOH HOH H . I 8 HOH 42 2042 2042 HOH HOH H . I 8 HOH 43 2043 2043 HOH HOH H . I 8 HOH 44 2044 2044 HOH HOH H . I 8 HOH 45 2045 2045 HOH HOH H . I 8 HOH 46 2046 2046 HOH HOH H . I 8 HOH 47 2047 2047 HOH HOH H . I 8 HOH 48 2048 2048 HOH HOH H . I 8 HOH 49 2049 2049 HOH HOH H . I 8 HOH 50 2050 2050 HOH HOH H . I 8 HOH 51 2051 2051 HOH HOH H . I 8 HOH 52 2052 2052 HOH HOH H . I 8 HOH 53 2053 2053 HOH HOH H . I 8 HOH 54 2054 2054 HOH HOH H . I 8 HOH 55 2055 2055 HOH HOH H . I 8 HOH 56 2056 2056 HOH HOH H . I 8 HOH 57 2057 2057 HOH HOH H . I 8 HOH 58 2058 2058 HOH HOH H . I 8 HOH 59 2059 2059 HOH HOH H . I 8 HOH 60 2060 2060 HOH HOH H . I 8 HOH 61 2061 2061 HOH HOH H . I 8 HOH 62 2062 2062 HOH HOH H . I 8 HOH 63 2063 2063 HOH HOH H . I 8 HOH 64 2064 2064 HOH HOH H . I 8 HOH 65 2065 2065 HOH HOH H . I 8 HOH 66 2066 2066 HOH HOH H . I 8 HOH 67 2067 2067 HOH HOH H . I 8 HOH 68 2068 2068 HOH HOH H . I 8 HOH 69 2069 2069 HOH HOH H . I 8 HOH 70 2070 2070 HOH HOH H . I 8 HOH 71 2071 2071 HOH HOH H . I 8 HOH 72 2072 2072 HOH HOH H . I 8 HOH 73 2073 2073 HOH HOH H . I 8 HOH 74 2074 2074 HOH HOH H . I 8 HOH 75 2075 2075 HOH HOH H . I 8 HOH 76 2076 2076 HOH HOH H . I 8 HOH 77 2077 2077 HOH HOH H . I 8 HOH 78 2078 2078 HOH HOH H . I 8 HOH 79 2079 2079 HOH HOH H . I 8 HOH 80 2080 2080 HOH HOH H . I 8 HOH 81 2081 2081 HOH HOH H . I 8 HOH 82 2082 2082 HOH HOH H . I 8 HOH 83 2083 2083 HOH HOH H . I 8 HOH 84 2084 2084 HOH HOH H . I 8 HOH 85 2085 2085 HOH HOH H . I 8 HOH 86 2086 2086 HOH HOH H . I 8 HOH 87 2087 2087 HOH HOH H . I 8 HOH 88 2088 2088 HOH HOH H . I 8 HOH 89 2089 2089 HOH HOH H . I 8 HOH 90 2090 2090 HOH HOH H . I 8 HOH 91 2091 2091 HOH HOH H . I 8 HOH 92 2092 2092 HOH HOH H . I 8 HOH 93 2093 2093 HOH HOH H . I 8 HOH 94 2094 2094 HOH HOH H . I 8 HOH 95 2095 2095 HOH HOH H . I 8 HOH 96 2096 2096 HOH HOH H . I 8 HOH 97 2097 2097 HOH HOH H . I 8 HOH 98 2098 2098 HOH HOH H . I 8 HOH 99 2099 2099 HOH HOH H . I 8 HOH 100 2100 2100 HOH HOH H . I 8 HOH 101 2101 2101 HOH HOH H . I 8 HOH 102 2102 2102 HOH HOH H . I 8 HOH 103 2103 2103 HOH HOH H . I 8 HOH 104 2104 2104 HOH HOH H . I 8 HOH 105 2105 2105 HOH HOH H . I 8 HOH 106 2106 2106 HOH HOH H . I 8 HOH 107 2107 2107 HOH HOH H . I 8 HOH 108 2108 2108 HOH HOH H . I 8 HOH 109 2109 2109 HOH HOH H . I 8 HOH 110 2110 2110 HOH HOH H . I 8 HOH 111 2111 2111 HOH HOH H . I 8 HOH 112 2112 2112 HOH HOH H . I 8 HOH 113 2113 2113 HOH HOH H . I 8 HOH 114 2114 2114 HOH HOH H . I 8 HOH 115 2115 2115 HOH HOH H . I 8 HOH 116 2116 2116 HOH HOH H . I 8 HOH 117 2117 2117 HOH HOH H . I 8 HOH 118 2118 2118 HOH HOH H . I 8 HOH 119 2119 2119 HOH HOH H . I 8 HOH 120 2120 2120 HOH HOH H . I 8 HOH 121 2121 2121 HOH HOH H . I 8 HOH 122 2122 2122 HOH HOH H . I 8 HOH 123 2123 2123 HOH HOH H . I 8 HOH 124 2124 2124 HOH HOH H . I 8 HOH 125 2125 2125 HOH HOH H . I 8 HOH 126 2126 2126 HOH HOH H . I 8 HOH 127 2127 2127 HOH HOH H . I 8 HOH 128 2128 2128 HOH HOH H . I 8 HOH 129 2129 2129 HOH HOH H . I 8 HOH 130 2130 2130 HOH HOH H . I 8 HOH 131 2131 2131 HOH HOH H . I 8 HOH 132 2132 2132 HOH HOH H . I 8 HOH 133 2133 2133 HOH HOH H . I 8 HOH 134 2134 2134 HOH HOH H . I 8 HOH 135 2135 2135 HOH HOH H . I 8 HOH 136 2136 2136 HOH HOH H . I 8 HOH 137 2137 2137 HOH HOH H . I 8 HOH 138 2138 2138 HOH HOH H . I 8 HOH 139 2139 2139 HOH HOH H . I 8 HOH 140 2140 2140 HOH HOH H . I 8 HOH 141 2141 2141 HOH HOH H . I 8 HOH 142 2142 2142 HOH HOH H . I 8 HOH 143 2143 2143 HOH HOH H . I 8 HOH 144 2144 2144 HOH HOH H . I 8 HOH 145 2145 2145 HOH HOH H . I 8 HOH 146 2146 2146 HOH HOH H . I 8 HOH 147 2147 2147 HOH HOH H . I 8 HOH 148 2148 2148 HOH HOH H . I 8 HOH 149 2149 2149 HOH HOH H . I 8 HOH 150 2150 2150 HOH HOH H . I 8 HOH 151 2151 2151 HOH HOH H . I 8 HOH 152 2152 2152 HOH HOH H . I 8 HOH 153 2153 2153 HOH HOH H . I 8 HOH 154 2154 2154 HOH HOH H . I 8 HOH 155 2155 2155 HOH HOH H . I 8 HOH 156 2156 2156 HOH HOH H . I 8 HOH 157 2157 2157 HOH HOH H . I 8 HOH 158 2158 2158 HOH HOH H . I 8 HOH 159 2159 2159 HOH HOH H . I 8 HOH 160 2160 2160 HOH HOH H . I 8 HOH 161 2161 2161 HOH HOH H . I 8 HOH 162 2162 2162 HOH HOH H . I 8 HOH 163 2163 2163 HOH HOH H . I 8 HOH 164 2164 2164 HOH HOH H . I 8 HOH 165 2165 2165 HOH HOH H . I 8 HOH 166 2166 2166 HOH HOH H . I 8 HOH 167 2167 2167 HOH HOH H . I 8 HOH 168 2168 2168 HOH HOH H . I 8 HOH 169 2169 2169 HOH HOH H . I 8 HOH 170 2170 2170 HOH HOH H . I 8 HOH 171 2171 2171 HOH HOH H . I 8 HOH 172 2172 2172 HOH HOH H . I 8 HOH 173 2173 2173 HOH HOH H . I 8 HOH 174 2174 2174 HOH HOH H . I 8 HOH 175 2175 2175 HOH HOH H . I 8 HOH 176 2176 2176 HOH HOH H . I 8 HOH 177 2177 2177 HOH HOH H . I 8 HOH 178 2178 2178 HOH HOH H . I 8 HOH 179 2179 2179 HOH HOH H . I 8 HOH 180 2180 2180 HOH HOH H . I 8 HOH 181 2181 2181 HOH HOH H . I 8 HOH 182 2182 2182 HOH HOH H . I 8 HOH 183 2183 2183 HOH HOH H . I 8 HOH 184 2184 2184 HOH HOH H . I 8 HOH 185 2185 2185 HOH HOH H . J 8 HOH 1 2001 2001 HOH HOH I . J 8 HOH 2 2002 2002 HOH HOH I . J 8 HOH 3 2003 2003 HOH HOH I . K 8 HOH 1 2001 2001 HOH HOH L . K 8 HOH 2 2002 2002 HOH HOH L . K 8 HOH 3 2003 2003 HOH HOH L . K 8 HOH 4 2004 2004 HOH HOH L . K 8 HOH 5 2005 2005 HOH HOH L . K 8 HOH 6 2006 2006 HOH HOH L . K 8 HOH 7 2007 2007 HOH HOH L . K 8 HOH 8 2008 2008 HOH HOH L . K 8 HOH 9 2009 2009 HOH HOH L . K 8 HOH 10 2010 2010 HOH HOH L . K 8 HOH 11 2011 2011 HOH HOH L . K 8 HOH 12 2012 2012 HOH HOH L . K 8 HOH 13 2013 2013 HOH HOH L . K 8 HOH 14 2014 2014 HOH HOH L . K 8 HOH 15 2015 2015 HOH HOH L . K 8 HOH 16 2016 2016 HOH HOH L . K 8 HOH 17 2017 2017 HOH HOH L . K 8 HOH 18 2018 2018 HOH HOH L . K 8 HOH 19 2019 2019 HOH HOH L . K 8 HOH 20 2020 2020 HOH HOH L . K 8 HOH 21 2021 2021 HOH HOH L . K 8 HOH 22 2022 2022 HOH HOH L . K 8 HOH 23 2023 2023 HOH HOH L . K 8 HOH 24 2024 2024 HOH HOH L . K 8 HOH 25 2025 2025 HOH HOH L . K 8 HOH 26 2026 2026 HOH HOH L . K 8 HOH 27 2027 2027 HOH HOH L . K 8 HOH 28 2028 2028 HOH HOH L . K 8 HOH 29 2029 2029 HOH HOH L . K 8 HOH 30 2030 2030 HOH HOH L . K 8 HOH 31 2031 2031 HOH HOH L . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H SER 36 A OG ? A SER 22 OG 2 1 Y 1 H ASN 62 ? OD1 ? A ASN 57 OD1 3 1 Y 1 H ASN 62 ? ND2 ? A ASN 57 ND2 4 1 Y 1 H LYS 87 ? CE ? A LYS 83 CE 5 1 Y 1 H LYS 87 ? NZ ? A LYS 83 NZ 6 1 Y 1 H LYS 110 ? CG ? A LYS 107 CG 7 1 Y 1 H LYS 110 ? CD ? A LYS 107 CD 8 1 Y 1 H LYS 110 ? CE ? A LYS 107 CE 9 1 Y 1 H LYS 110 ? NZ ? A LYS 107 NZ 10 1 Y 1 H THR 147 ? OG1 ? A THR 147 OG1 11 1 Y 1 H THR 147 ? CG2 ? A THR 147 CG2 12 1 Y 1 H GLN 151 ? CG ? A GLN 156 CG 13 1 Y 1 H GLN 151 ? CD ? A GLN 156 CD 14 1 Y 1 H GLN 151 ? OE1 ? A GLN 156 OE1 15 1 Y 1 H GLN 151 ? NE2 ? A GLN 156 NE2 16 1 Y 1 H LYS 169 ? CE ? A LYS 174 CE 17 1 Y 1 H LYS 169 ? NZ ? A LYS 174 NZ 18 1 Y 1 H ASP 186 A CG ? A ASP 193 CG 19 1 Y 1 H ASP 186 A OD1 ? A ASP 193 OD1 20 1 Y 1 H ASP 186 A OD2 ? A ASP 193 OD2 21 1 Y 1 H GLU 192 ? CD ? A GLU 202 CD 22 1 Y 1 H GLU 192 ? OE1 ? A GLU 202 OE1 23 1 Y 1 H GLU 192 ? OE2 ? A GLU 202 OE2 24 1 Y 1 H LYS 236 ? CG ? A LYS 248 CG 25 1 Y 1 H LYS 236 ? CD ? A LYS 248 CD 26 1 Y 1 H LYS 236 ? CE ? A LYS 248 CE 27 1 Y 1 H LYS 236 ? NZ ? A LYS 248 NZ 28 1 Y 1 H LYS 240 ? CD ? A LYS 252 CD 29 1 Y 1 H LYS 240 ? CE ? A LYS 252 CE 30 1 Y 1 H LYS 240 ? NZ ? A LYS 252 NZ 31 1 Y 1 H GLY 246 ? CA ? A GLY 258 CA 32 1 Y 1 H GLY 246 ? C ? A GLY 258 C 33 1 Y 1 H GLY 246 ? O ? A GLY 258 O 34 1 Y 1 I GLU 558 ? CG ? B GLU 5 CG 35 1 Y 1 I GLU 558 ? CD ? B GLU 5 CD 36 1 Y 1 I GLU 558 ? OE1 ? B GLU 5 OE1 37 1 Y 1 I GLU 558 ? OE2 ? B GLU 5 OE2 38 1 Y 1 I GLU 561 ? CG ? B GLU 8 CG 39 1 Y 1 I GLU 561 ? CD ? B GLU 8 CD 40 1 Y 1 I GLU 561 ? OE1 ? B GLU 8 OE1 41 1 Y 1 I GLU 561 ? OE2 ? B GLU 8 OE2 42 1 Y 1 L GLU 1 C CG ? C GLU 1 CG 43 1 Y 1 L GLU 1 C CD ? C GLU 1 CD 44 1 Y 1 L GLU 1 C OE1 ? C GLU 1 OE1 45 1 Y 1 L GLU 1 C OE2 ? C GLU 1 OE2 46 1 Y 1 L LYS 9 ? NZ ? C LYS 12 NZ 47 1 Y 1 L LYS 14 A CE ? C LYS 18 CE 48 1 Y 1 L LYS 14 A NZ ? C LYS 18 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE)' ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XDS 'data scaling' . ? 3 ? ? ? ? PHASER phasing . ? 4 ? ? ? ? # _cell.entry_id 5AFZ _cell.length_a 70.308 _cell.length_b 71.643 _cell.length_c 72.354 _cell.angle_alpha 90.00 _cell.angle_beta 100.53 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AFZ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 5AFZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.6 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'SEE MATERIALS AND METHODS SECTION OF PUBLICATION, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2014-12-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.896 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.3' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.3 _diffrn_source.pdbx_wavelength 0.896 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AFZ _reflns.observed_criterion_sigma_I 2.8 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 21.47 _reflns.d_resolution_high 1.53 _reflns.number_obs 53119 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.70 _reflns.B_iso_Wilson_estimate 16.99 _reflns.pdbx_redundancy 3.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.53 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.53 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.80 _reflns_shell.pdbx_redundancy 3.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AFZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 53073 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 21.468 _refine.ls_d_res_high 1.530 _refine.ls_percent_reflns_obs 99.70 _refine.ls_R_factor_obs 0.1464 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1450 _refine.ls_R_factor_R_free 0.1741 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2653 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.00 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 4UE7 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.12 _refine.pdbx_overall_phase_error 16.06 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2282 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 73 _refine_hist.number_atoms_solvent 219 _refine_hist.number_atoms_total 2574 _refine_hist.d_res_high 1.530 _refine_hist.d_res_low 21.468 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 2494 'X-RAY DIFFRACTION' ? f_angle_d 1.037 ? ? 3383 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.963 ? ? 987 'X-RAY DIFFRACTION' ? f_chiral_restr 0.042 ? ? 353 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 456 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.5296 1.5575 2595 0.1740 99.00 0.1977 . . 136 . . 'X-RAY DIFFRACTION' . 1.5575 1.5874 2659 0.1764 100.00 0.1902 . . 140 . . 'X-RAY DIFFRACTION' . 1.5874 1.6198 2663 0.1660 100.00 0.2018 . . 140 . . 'X-RAY DIFFRACTION' . 1.6198 1.6550 2619 0.1465 100.00 0.2162 . . 138 . . 'X-RAY DIFFRACTION' . 1.6550 1.6935 2647 0.1421 100.00 0.2051 . . 140 . . 'X-RAY DIFFRACTION' . 1.6935 1.7358 2660 0.1360 100.00 0.1551 . . 139 . . 'X-RAY DIFFRACTION' . 1.7358 1.7827 2631 0.1325 100.00 0.1610 . . 139 . . 'X-RAY DIFFRACTION' . 1.7827 1.8352 2658 0.1265 100.00 0.1667 . . 140 . . 'X-RAY DIFFRACTION' . 1.8352 1.8944 2647 0.1270 100.00 0.1635 . . 139 . . 'X-RAY DIFFRACTION' . 1.8944 1.9620 2671 0.1277 100.00 0.1865 . . 141 . . 'X-RAY DIFFRACTION' . 1.9620 2.0405 2632 0.1298 100.00 0.1566 . . 138 . . 'X-RAY DIFFRACTION' . 2.0405 2.1333 2661 0.1302 100.00 0.1631 . . 140 . . 'X-RAY DIFFRACTION' . 2.1333 2.2457 2647 0.1354 100.00 0.1573 . . 140 . . 'X-RAY DIFFRACTION' . 2.2457 2.3862 2691 0.1399 100.00 0.1992 . . 141 . . 'X-RAY DIFFRACTION' . 2.3862 2.5702 2637 0.1518 100.00 0.1964 . . 139 . . 'X-RAY DIFFRACTION' . 2.5702 2.8283 2671 0.1671 100.00 0.1702 . . 141 . . 'X-RAY DIFFRACTION' . 2.8283 3.2363 2663 0.1685 100.00 0.1796 . . 140 . . 'X-RAY DIFFRACTION' . 3.2363 4.0729 2690 0.1413 100.00 0.1583 . . 141 . . 'X-RAY DIFFRACTION' . 4.0729 21.4697 2678 0.1417 98.00 0.1731 . . 141 . . # _database_PDB_matrix.entry_id 5AFZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5AFZ _struct.title 'Thrombin in complex with (2R)-2-(benzylsulfonylamino)-N-(2-((4- carbamimidoylphenyl)methylamino)-2-oxo-propyl)-3-phenyl-propanamide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AFZ _struct_keywords.pdbx_keywords 'BLOOD CLOTTING' _struct_keywords.text ;HYDROLASE, HYDROLASE INHIBITOR COMPLEX, SERINE PROTEASE, BLOOD COAGULATION, BLOOD CLOTTING, CONVERTION OF FIBRINOGEN TO FIBRIN, BLOOD CLOTTING INHIBITOR, THROMBIN INHIBITOR, FRAGMENT, GLYCOSYLATION, BLOOD ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 7 ? I N N 8 ? J N N 8 ? K N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP THRB_HUMAN P00734 ? 1 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; 364 2 UNP HIR2_HIRME P28504 ? 2 GDFEEIPEEYLQ 54 3 UNP THRB_HUMAN P00734 ? 3 EADCGLRPLFEKKSLEDKTERELLESYID 333 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5AFZ H 1 ? 258 ? P00734 364 ? 621 ? 16 246 2 2 5AFZ I 1 ? 12 ? P28504 54 ? 65 ? 554 565 3 3 5AFZ L 1 C 29 ? P00734 333 ? 361 ? 1 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5010 ? 1 MORE -40.5 ? 1 'SSA (A^2)' 12370 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 41 ? CYS A 44 ? ALA H 55 CYS H 58 5 ? 4 HELX_P HELX_P2 2 PRO A 48 B ASP A 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P3 3 THR A 55 I ASN A 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P4 4 ASP A 122 ? LEU A 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P5 5 GLU A 169 ? SER A 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P6 6 LYS A 191 ? GLY A 195 C LYS H 185 GLY H 186 5 ? 5 HELX_P HELX_P7 7 LEU A 246 ? PHE A 257 ? LEU H 234 PHE H 245 1 ? 12 HELX_P HELX_P8 8 PHE C 10 ? SER C 14 ? PHE L 7 SER L 11 5 ? 5 HELX_P HELX_P9 9 THR C 19 B TYR C 27 J THR L 14 TYR L 14 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? A CYS 119 SG ? ? ? 1_555 C CYS 4 SG ? ? H CYS 122 L CYS 1 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf3 disulf ? ? A CYS 173 SG ? ? ? 1_555 A CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf4 disulf ? ? A CYS 201 SG ? ? ? 1_555 A CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale one ? A ASN 53 ND2 ? G ? 1_555 H NAG . C1 ? ? H ASN 60 H NAG 1250 1_555 ? ? ? ? ? ? ? 1.425 ? N-Glycosylation covale2 covale both ? B GLU 9 C ? ? ? 1_555 B TYS 10 N ? ? I GLU 562 I TYS 563 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? B TYS 10 C ? ? ? 1_555 B LEU 11 N ? ? I TYS 563 I LEU 564 1_555 ? ? ? ? ? ? ? 1.327 ? ? metalc1 metalc ? ? A LYS 174 O ? ? ? 1_555 E NA . NA ? ? H LYS 169 H NA 1247 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc2 metalc ? ? A THR 177 O ? ? ? 1_555 E NA . NA ? ? H THR 172 H NA 1247 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc3 metalc ? ? A ARG 233 O ? A ? 1_555 D NA . NA ? ? H ARG 221 H NA 1246 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc4 metalc ? ? A LYS 236 O ? ? ? 1_555 D NA . NA ? ? H LYS 224 H NA 1246 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? H NA 1246 H HOH 2147 1_555 ? ? ? ? ? ? ? 2.536 ? ? metalc6 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? H NA 1246 H HOH 2148 1_555 ? ? ? ? ? ? ? 2.636 ? ? metalc7 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? H NA 1246 H HOH 2158 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc8 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? H NA 1246 H HOH 2176 1_555 ? ? ? ? ? ? ? 2.404 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LYS 174 ? H LYS 169 ? 1_555 NA ? E NA . ? H NA 1247 ? 1_555 O ? A THR 177 ? H THR 172 ? 1_555 82.1 ? 2 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? A LYS 236 ? H LYS 224 ? 1_555 94.0 ? 3 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2147 ? 1_555 160.6 ? 4 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2147 ? 1_555 69.0 ? 5 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2148 ? 1_555 90.3 ? 6 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2148 ? 1_555 93.7 ? 7 O ? I HOH . ? H HOH 2147 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2148 ? 1_555 81.9 ? 8 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2158 ? 1_555 97.8 ? 9 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2158 ? 1_555 82.3 ? 10 O ? I HOH . ? H HOH 2147 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2158 ? 1_555 89.3 ? 11 O ? I HOH . ? H HOH 2148 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2158 ? 1_555 171.2 ? 12 O ? A ARG 233 ? H ARG 221 A 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2176 ? 1_555 107.8 ? 13 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2176 ? 1_555 158.1 ? 14 O ? I HOH . ? H HOH 2147 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2176 ? 1_555 89.2 ? 15 O ? I HOH . ? H HOH 2148 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2176 ? 1_555 84.7 ? 16 O ? I HOH . ? H HOH 2158 ? 1_555 NA ? D NA . ? H NA 1246 ? 1_555 O ? I HOH . ? H HOH 2176 ? 1_555 96.0 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details HA ? 7 ? HB ? 7 ? HC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense HA 1 2 ? anti-parallel HA 2 3 ? anti-parallel HA 3 4 ? anti-parallel HA 4 5 ? anti-parallel HA 5 6 ? anti-parallel HA 6 7 ? anti-parallel HB 1 2 ? anti-parallel HB 2 3 ? anti-parallel HB 3 4 ? anti-parallel HB 4 5 ? anti-parallel HB 5 6 ? anti-parallel HB 6 7 ? anti-parallel HC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id HA 1 SER A 5 ? ASP A 6 ? SER H 20 ASP H 21 HA 2 GLN A 161 ? PRO A 166 ? GLN H 156 PRO H 161 HA 3 LYS A 135 ? GLY A 140 ? LYS H 135 GLY H 140 HA 4 PRO A 208 ? LYS A 212 ? PRO H 198 LYS H 202 HA 5 TRP A 219 ? TRP A 227 ? TRP H 207 TRP H 215 HA 6 GLY A 238 ? HIS A 242 ? GLY H 226 HIS H 230 HA 7 MET A 185 ? ALA A 188 ? MET H 180 ALA H 183 HB 1 GLN A 15 ? ARG A 20 ? GLN H 30 ARG H 35 HB 2 GLU A 25 ? LEU A 32 ? GLU H 39 LEU H 46 HB 3 TRP A 37 ? THR A 40 ? TRP H 51 THR H 54 HB 4 ALA A 101 ? LEU A 105 ? ALA H 104 LEU H 108 HB 5 LYS A 77 ? ILE A 86 ? LYS H 81 ILE H 90 HB 6 LEU A 59 ? ILE A 63 ? LEU H 64 ILE H 68 HB 7 GLN A 15 ? ARG A 20 ? GLN H 30 ARG H 35 HC 1 LEU A 46 ? TYR A 47 A LEU H 60 TYR H 60 HC 2 LYS A 52 F ASN A 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id HA 1 2 N SER A 5 ? N SER H 20 O VAL A 162 ? O VAL H 157 HA 2 3 N LEU A 165 ? N LEU H 160 O GLY A 136 ? O GLY H 136 HA 3 4 N THR A 139 ? N THR H 139 O PRO A 208 ? O PRO H 198 HA 4 5 N MET A 211 ? N MET H 201 O TYR A 220 ? O TYR H 208 HA 5 6 N SER A 226 ? N SER H 214 O PHE A 239 ? O PHE H 227 HA 6 7 N TYR A 240 ? N TYR H 228 O PHE A 186 ? O PHE H 181 HB 1 2 N ARG A 20 ? N ARG H 35 O GLU A 25 ? O GLU H 39 HB 2 3 N SER A 31 ? N SER H 45 O LEU A 39 ? O LEU H 53 HB 3 4 N THR A 40 ? N THR H 54 O ALA A 101 ? O ALA H 104 HB 4 5 O LYS A 104 ? O LYS H 107 N GLU A 82 ? N GLU H 86 HB 5 6 N LEU A 81 ? N LEU H 85 O LEU A 59 ? O LEU H 64 HB 6 7 N ARG A 62 ? N ARG H 67 O MET A 17 ? O MET H 32 HC 1 2 N TYR A 47 A N TYR H 60 O LYS A 52 F O LYS H 60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR H 60 A ? -153.89 84.75 2 1 ASN H 60 G ? -156.74 81.85 3 1 HIS H 71 ? ? -128.56 -61.98 4 1 ILE H 79 ? ? -126.78 -60.73 5 1 GLU H 97 A ? -115.99 -72.00 6 1 GLU H 97 A ? -114.71 -72.00 7 1 SER H 214 ? ? -121.17 -60.62 8 1 PHE L 7 ? ? -130.63 -86.25 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id TYS _pdbx_struct_mod_residue.label_seq_id 10 _pdbx_struct_mod_residue.auth_asym_id I _pdbx_struct_mod_residue.auth_comp_id TYS _pdbx_struct_mod_residue.auth_seq_id 563 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details 'modified residue' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 H ARG 75 ? A ARG 70 2 1 H HOH 2059 ? I HOH . # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "HB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 5AFZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;ASP 14L WAS NOT BUILD DUE TO LACK OF ELECTRON DESITY RESIDUES 148-149E AND 246 WERE NOT BUILD DUE TO LACK OF ELECTRON DESITY RESIDUES G554-D555 AND Q565 WERE NOT BUILD DUE TO LACK OF ELECTRON DESITY ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id H _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2037 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.81 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H TRP 147 A A TRP 148 2 1 Y 1 H THR 147 B A THR 149 3 1 Y 1 H ALA 147 C A ALA 150 4 1 Y 1 H ASN 147 D A ASN 151 5 1 Y 1 H VAL 147 E A VAL 152 6 1 Y 1 H GLY 147 F A GLY 153 7 1 Y 1 H LYS 147 G A LYS 154 8 1 Y 1 I GLY 554 ? B GLY 1 9 1 Y 1 I ASP 555 ? B ASP 2 10 1 Y 1 I GLN 565 ? B GLN 12 11 1 Y 1 L ASP 15 ? C ASP 29 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NA NA NA N N 250 NAG C1 C N R 251 NAG C2 C N R 252 NAG C3 C N R 253 NAG C4 C N S 254 NAG C5 C N R 255 NAG C6 C N N 256 NAG C7 C N N 257 NAG C8 C N N 258 NAG N2 N N N 259 NAG O1 O N N 260 NAG O3 O N N 261 NAG O4 O N N 262 NAG O5 O N N 263 NAG O6 O N N 264 NAG O7 O N N 265 NAG H1 H N N 266 NAG H2 H N N 267 NAG H3 H N N 268 NAG H4 H N N 269 NAG H5 H N N 270 NAG H61 H N N 271 NAG H62 H N N 272 NAG H81 H N N 273 NAG H82 H N N 274 NAG H83 H N N 275 NAG HN2 H N N 276 NAG HO1 H N N 277 NAG HO3 H N N 278 NAG HO4 H N N 279 NAG HO6 H N N 280 PHE N N N N 281 PHE CA C N S 282 PHE C C N N 283 PHE O O N N 284 PHE CB C N N 285 PHE CG C Y N 286 PHE CD1 C Y N 287 PHE CD2 C Y N 288 PHE CE1 C Y N 289 PHE CE2 C Y N 290 PHE CZ C Y N 291 PHE OXT O N N 292 PHE H H N N 293 PHE H2 H N N 294 PHE HA H N N 295 PHE HB2 H N N 296 PHE HB3 H N N 297 PHE HD1 H N N 298 PHE HD2 H N N 299 PHE HE1 H N N 300 PHE HE2 H N N 301 PHE HZ H N N 302 PHE HXT H N N 303 PO4 P P N N 304 PO4 O1 O N N 305 PO4 O2 O N N 306 PO4 O3 O N N 307 PO4 O4 O N N 308 PRO N N N N 309 PRO CA C N S 310 PRO C C N N 311 PRO O O N N 312 PRO CB C N N 313 PRO CG C N N 314 PRO CD C N N 315 PRO OXT O N N 316 PRO H H N N 317 PRO HA H N N 318 PRO HB2 H N N 319 PRO HB3 H N N 320 PRO HG2 H N N 321 PRO HG3 H N N 322 PRO HD2 H N N 323 PRO HD3 H N N 324 PRO HXT H N N 325 SER N N N N 326 SER CA C N S 327 SER C C N N 328 SER O O N N 329 SER CB C N N 330 SER OG O N N 331 SER OXT O N N 332 SER H H N N 333 SER H2 H N N 334 SER HA H N N 335 SER HB2 H N N 336 SER HB3 H N N 337 SER HG H N N 338 SER HXT H N N 339 THR N N N N 340 THR CA C N S 341 THR C C N N 342 THR O O N N 343 THR CB C N R 344 THR OG1 O N N 345 THR CG2 C N N 346 THR OXT O N N 347 THR H H N N 348 THR H2 H N N 349 THR HA H N N 350 THR HB H N N 351 THR HG1 H N N 352 THR HG21 H N N 353 THR HG22 H N N 354 THR HG23 H N N 355 THR HXT H N N 356 TRP N N N N 357 TRP CA C N S 358 TRP C C N N 359 TRP O O N N 360 TRP CB C N N 361 TRP CG C Y N 362 TRP CD1 C Y N 363 TRP CD2 C Y N 364 TRP NE1 N Y N 365 TRP CE2 C Y N 366 TRP CE3 C Y N 367 TRP CZ2 C Y N 368 TRP CZ3 C Y N 369 TRP CH2 C Y N 370 TRP OXT O N N 371 TRP H H N N 372 TRP H2 H N N 373 TRP HA H N N 374 TRP HB2 H N N 375 TRP HB3 H N N 376 TRP HD1 H N N 377 TRP HE1 H N N 378 TRP HE3 H N N 379 TRP HZ2 H N N 380 TRP HZ3 H N N 381 TRP HH2 H N N 382 TRP HXT H N N 383 TYR N N N N 384 TYR CA C N S 385 TYR C C N N 386 TYR O O N N 387 TYR CB C N N 388 TYR CG C Y N 389 TYR CD1 C Y N 390 TYR CD2 C Y N 391 TYR CE1 C Y N 392 TYR CE2 C Y N 393 TYR CZ C Y N 394 TYR OH O N N 395 TYR OXT O N N 396 TYR H H N N 397 TYR H2 H N N 398 TYR HA H N N 399 TYR HB2 H N N 400 TYR HB3 H N N 401 TYR HD1 H N N 402 TYR HD2 H N N 403 TYR HE1 H N N 404 TYR HE2 H N N 405 TYR HH H N N 406 TYR HXT H N N 407 TYS N N N N 408 TYS CA C N S 409 TYS CB C N N 410 TYS CG C Y N 411 TYS CD1 C Y N 412 TYS CD2 C Y N 413 TYS CE1 C Y N 414 TYS CE2 C Y N 415 TYS CZ C Y N 416 TYS OH O N N 417 TYS S S N N 418 TYS O1 O N N 419 TYS O2 O N N 420 TYS O3 O N N 421 TYS C C N N 422 TYS O O N N 423 TYS OXT O N N 424 TYS H H N N 425 TYS H2 H N N 426 TYS HA H N N 427 TYS HB2 H N N 428 TYS HB3 H N N 429 TYS HD1 H N N 430 TYS HD2 H N N 431 TYS HE1 H N N 432 TYS HE2 H N N 433 TYS HO3 H N N 434 TYS HXT H N N 435 UET O3 O N N 436 UET S S N N 437 UET O2 O N N 438 UET C17 C N N 439 UET C18 C Y N 440 UET C23 C Y N 441 UET C22 C Y N 442 UET C21 C Y N 443 UET C20 C Y N 444 UET C19 C Y N 445 UET N4 N N N 446 UET C9 C N R 447 UET C10 C N N 448 UET C11 C Y N 449 UET C16 C Y N 450 UET C15 C Y N 451 UET C14 C Y N 452 UET C13 C Y N 453 UET C12 C Y N 454 UET C8 C N N 455 UET O1 O N N 456 UET N3 N N N 457 UET C7 C N N 458 UET C6 C N N 459 UET O O N N 460 UET N2 N N N 461 UET C5 C N N 462 UET C4 C Y N 463 UET C3 C Y N 464 UET C2 C Y N 465 UET C24 C Y N 466 UET C25 C Y N 467 UET C1 C Y N 468 UET C C N N 469 UET N1 N N N 470 UET N N N N 471 UET H171 H N N 472 UET H172 H N N 473 UET H4 H N N 474 UET H23 H N N 475 UET H19 H N N 476 UET H22 H N N 477 UET H21 H N N 478 UET H20 H N N 479 UET H9 H N N 480 UET H101 H N N 481 UET H102 H N N 482 UET H16 H N N 483 UET H12 H N N 484 UET H15 H N N 485 UET H14 H N N 486 UET H13 H N N 487 UET H3 H N N 488 UET H71C H N N 489 UET H72C H N N 490 UET H2 H N N 491 UET H51C H N N 492 UET H52C H N N 493 UET HA H N N 494 UET H24 H N N 495 UET HB H N N 496 UET H25 H N N 497 UET H11N H N N 498 UET H12N H N N 499 UET H H N N 500 VAL N N N N 501 VAL CA C N S 502 VAL C C N N 503 VAL O O N N 504 VAL CB C N N 505 VAL CG1 C N N 506 VAL CG2 C N N 507 VAL OXT O N N 508 VAL H H N N 509 VAL H2 H N N 510 VAL HA H N N 511 VAL HB H N N 512 VAL HG11 H N N 513 VAL HG12 H N N 514 VAL HG13 H N N 515 VAL HG21 H N N 516 VAL HG22 H N N 517 VAL HG23 H N N 518 VAL HXT H N N 519 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NAG C1 C2 sing N N 237 NAG C1 O1 sing N N 238 NAG C1 O5 sing N N 239 NAG C1 H1 sing N N 240 NAG C2 C3 sing N N 241 NAG C2 N2 sing N N 242 NAG C2 H2 sing N N 243 NAG C3 C4 sing N N 244 NAG C3 O3 sing N N 245 NAG C3 H3 sing N N 246 NAG C4 C5 sing N N 247 NAG C4 O4 sing N N 248 NAG C4 H4 sing N N 249 NAG C5 C6 sing N N 250 NAG C5 O5 sing N N 251 NAG C5 H5 sing N N 252 NAG C6 O6 sing N N 253 NAG C6 H61 sing N N 254 NAG C6 H62 sing N N 255 NAG C7 C8 sing N N 256 NAG C7 N2 sing N N 257 NAG C7 O7 doub N N 258 NAG C8 H81 sing N N 259 NAG C8 H82 sing N N 260 NAG C8 H83 sing N N 261 NAG N2 HN2 sing N N 262 NAG O1 HO1 sing N N 263 NAG O3 HO3 sing N N 264 NAG O4 HO4 sing N N 265 NAG O6 HO6 sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PO4 P O1 doub N N 290 PO4 P O2 sing N N 291 PO4 P O3 sing N N 292 PO4 P O4 sing N N 293 PRO N CA sing N N 294 PRO N CD sing N N 295 PRO N H sing N N 296 PRO CA C sing N N 297 PRO CA CB sing N N 298 PRO CA HA sing N N 299 PRO C O doub N N 300 PRO C OXT sing N N 301 PRO CB CG sing N N 302 PRO CB HB2 sing N N 303 PRO CB HB3 sing N N 304 PRO CG CD sing N N 305 PRO CG HG2 sing N N 306 PRO CG HG3 sing N N 307 PRO CD HD2 sing N N 308 PRO CD HD3 sing N N 309 PRO OXT HXT sing N N 310 SER N CA sing N N 311 SER N H sing N N 312 SER N H2 sing N N 313 SER CA C sing N N 314 SER CA CB sing N N 315 SER CA HA sing N N 316 SER C O doub N N 317 SER C OXT sing N N 318 SER CB OG sing N N 319 SER CB HB2 sing N N 320 SER CB HB3 sing N N 321 SER OG HG sing N N 322 SER OXT HXT sing N N 323 THR N CA sing N N 324 THR N H sing N N 325 THR N H2 sing N N 326 THR CA C sing N N 327 THR CA CB sing N N 328 THR CA HA sing N N 329 THR C O doub N N 330 THR C OXT sing N N 331 THR CB OG1 sing N N 332 THR CB CG2 sing N N 333 THR CB HB sing N N 334 THR OG1 HG1 sing N N 335 THR CG2 HG21 sing N N 336 THR CG2 HG22 sing N N 337 THR CG2 HG23 sing N N 338 THR OXT HXT sing N N 339 TRP N CA sing N N 340 TRP N H sing N N 341 TRP N H2 sing N N 342 TRP CA C sing N N 343 TRP CA CB sing N N 344 TRP CA HA sing N N 345 TRP C O doub N N 346 TRP C OXT sing N N 347 TRP CB CG sing N N 348 TRP CB HB2 sing N N 349 TRP CB HB3 sing N N 350 TRP CG CD1 doub Y N 351 TRP CG CD2 sing Y N 352 TRP CD1 NE1 sing Y N 353 TRP CD1 HD1 sing N N 354 TRP CD2 CE2 doub Y N 355 TRP CD2 CE3 sing Y N 356 TRP NE1 CE2 sing Y N 357 TRP NE1 HE1 sing N N 358 TRP CE2 CZ2 sing Y N 359 TRP CE3 CZ3 doub Y N 360 TRP CE3 HE3 sing N N 361 TRP CZ2 CH2 doub Y N 362 TRP CZ2 HZ2 sing N N 363 TRP CZ3 CH2 sing Y N 364 TRP CZ3 HZ3 sing N N 365 TRP CH2 HH2 sing N N 366 TRP OXT HXT sing N N 367 TYR N CA sing N N 368 TYR N H sing N N 369 TYR N H2 sing N N 370 TYR CA C sing N N 371 TYR CA CB sing N N 372 TYR CA HA sing N N 373 TYR C O doub N N 374 TYR C OXT sing N N 375 TYR CB CG sing N N 376 TYR CB HB2 sing N N 377 TYR CB HB3 sing N N 378 TYR CG CD1 doub Y N 379 TYR CG CD2 sing Y N 380 TYR CD1 CE1 sing Y N 381 TYR CD1 HD1 sing N N 382 TYR CD2 CE2 doub Y N 383 TYR CD2 HD2 sing N N 384 TYR CE1 CZ doub Y N 385 TYR CE1 HE1 sing N N 386 TYR CE2 CZ sing Y N 387 TYR CE2 HE2 sing N N 388 TYR CZ OH sing N N 389 TYR OH HH sing N N 390 TYR OXT HXT sing N N 391 TYS N CA sing N N 392 TYS N H sing N N 393 TYS N H2 sing N N 394 TYS CA CB sing N N 395 TYS CA C sing N N 396 TYS CA HA sing N N 397 TYS CB CG sing N N 398 TYS CB HB2 sing N N 399 TYS CB HB3 sing N N 400 TYS CG CD1 doub Y N 401 TYS CG CD2 sing Y N 402 TYS CD1 CE1 sing Y N 403 TYS CD1 HD1 sing N N 404 TYS CD2 CE2 doub Y N 405 TYS CD2 HD2 sing N N 406 TYS CE1 CZ doub Y N 407 TYS CE1 HE1 sing N N 408 TYS CE2 CZ sing Y N 409 TYS CE2 HE2 sing N N 410 TYS CZ OH sing N N 411 TYS OH S sing N N 412 TYS S O1 doub N N 413 TYS S O2 doub N N 414 TYS S O3 sing N N 415 TYS O3 HO3 sing N N 416 TYS C O doub N N 417 TYS C OXT sing N N 418 TYS OXT HXT sing N N 419 UET O3 S doub N N 420 UET S O2 doub N N 421 UET S C17 sing N N 422 UET S N4 sing N N 423 UET C17 C18 sing N N 424 UET C18 C23 sing Y N 425 UET C18 C19 doub Y N 426 UET C23 C22 doub Y N 427 UET C22 C21 sing Y N 428 UET C21 C20 doub Y N 429 UET C20 C19 sing Y N 430 UET N4 C9 sing N N 431 UET C9 C10 sing N N 432 UET C9 C8 sing N N 433 UET C10 C11 sing N N 434 UET C11 C16 sing Y N 435 UET C11 C12 doub Y N 436 UET C16 C15 doub Y N 437 UET C15 C14 sing Y N 438 UET C14 C13 doub Y N 439 UET C13 C12 sing Y N 440 UET C8 O1 doub N N 441 UET C8 N3 sing N N 442 UET N3 C7 sing N N 443 UET C7 C6 sing N N 444 UET C6 O doub N N 445 UET C6 N2 sing N N 446 UET N2 C5 sing N N 447 UET C5 C4 sing N N 448 UET C4 C3 sing Y N 449 UET C4 C24 doub Y N 450 UET C3 C2 doub Y N 451 UET C2 C1 sing Y N 452 UET C24 C25 sing Y N 453 UET C25 C1 doub Y N 454 UET C1 C sing N N 455 UET C N1 sing N N 456 UET C N doub N N 457 UET C17 H171 sing N N 458 UET C17 H172 sing N N 459 UET N4 H4 sing N N 460 UET C23 H23 sing N N 461 UET C19 H19 sing N N 462 UET C22 H22 sing N N 463 UET C21 H21 sing N N 464 UET C20 H20 sing N N 465 UET C9 H9 sing N N 466 UET C10 H101 sing N N 467 UET C10 H102 sing N N 468 UET C16 H16 sing N N 469 UET C12 H12 sing N N 470 UET C15 H15 sing N N 471 UET C14 H14 sing N N 472 UET C13 H13 sing N N 473 UET N3 H3 sing N N 474 UET C7 H71C sing N N 475 UET C7 H72C sing N N 476 UET N2 H2 sing N N 477 UET C5 H51C sing N N 478 UET C5 H52C sing N N 479 UET C3 HA sing N N 480 UET C24 H24 sing N N 481 UET C2 HB sing N N 482 UET C25 H25 sing N N 483 UET N1 H11N sing N N 484 UET N1 H12N sing N N 485 UET N H sing N N 486 VAL N CA sing N N 487 VAL N H sing N N 488 VAL N H2 sing N N 489 VAL CA C sing N N 490 VAL CA CB sing N N 491 VAL CA HA sing N N 492 VAL C O doub N N 493 VAL C OXT sing N N 494 VAL CB CG1 sing N N 495 VAL CB CG2 sing N N 496 VAL CB HB sing N N 497 VAL CG1 HG11 sing N N 498 VAL CG1 HG12 sing N N 499 VAL CG1 HG13 sing N N 500 VAL CG2 HG21 sing N N 501 VAL CG2 HG22 sing N N 502 VAL CG2 HG23 sing N N 503 VAL OXT HXT sing N N 504 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4UE7 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5AFZ _atom_sites.fract_transf_matrix[1][1] 0.014223 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002644 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013958 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014058 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_