HEADER HYDROLASE 29-JAN-15 5AG8 TITLE CRYSTAL STRUCTURE OF A MUTANT (665I6H) OF THE C-TERMINAL DOMAIN OF TITLE 2 RGPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: GINGIPAIN R2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IGSF AND CTD DOMAINS, RESIDUES 577-736; COMPND 5 SYNONYM: ARG-GINGIPAIN, GINGIPAIN 2, RGP-2, ARG-GINGIPAIN B; COMPND 6 EC: 3.4.22.37; COMPND 7 OTHER_DETAILS: HEXAHISTIDINE INSERTION AFTER SER 664 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83 KEYWDS HYDROLASE, TYPE IX SECRETION SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.DE DIEGO,M.KSIAZEK,D.MIZGALSKA,P.GOLIK,B.SZMIGIELSKI,M.NOWAK, AUTHOR 2 Z.NOWAKOWSKA,B.POTEMPA,L.KONERU,K.A.NGUYEN,J.ENGHILD,I.B.THOGERSEN, AUTHOR 3 G.DUBIN,F.X.GOMIS-RUTH,J.POTEMPA REVDAT 2 10-JAN-24 5AG8 1 REMARK REVDAT 1 06-APR-16 5AG8 0 JRNL AUTH I.DE DIEGO,M.KSIAZEK,D.MIZGALSKA,L.KONERU,P.GOLIK, JRNL AUTH 2 B.SZMIGIELSKI,M.NOWAK,Z.NOWAKOWSKA,B.POTEMPA,J.A.HOUSTON, JRNL AUTH 3 J.J.ENGHILD,I.B.THOGERSEN,J.GAO,A.H.KWAN,J.TREWHELLA, JRNL AUTH 4 G.DUBIN,F.X.GOMIS-RUTH,K.NGUYEN,J.POTEMPA JRNL TITL THE OUTER-MEMBRANE EXPORT SIGNAL OF PORPHYROMONAS GINGIVALIS JRNL TITL 2 TYPE IX SECRETION SYSTEM (T9SS) IS A CONSERVED C-TERMINAL JRNL TITL 3 BETA-SANDWICH DOMAIN. JRNL REF SCI.REP. V. 6 23123 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27005013 JRNL DOI 10.1038/SREP23123 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 23171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.574 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2258 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3060 ; 1.980 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.268 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;41.518 ;25.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;14.585 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.395 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1586 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 579 A 662 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9265 13.4708 -0.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.0050 REMARK 3 T33: 0.0220 T12: -0.0044 REMARK 3 T13: 0.0004 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.6645 L22: 1.4821 REMARK 3 L33: 3.1777 L12: 0.3287 REMARK 3 L13: 1.7913 L23: 1.0235 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.0478 S13: 0.0524 REMARK 3 S21: -0.0831 S22: -0.0219 S23: -0.0370 REMARK 3 S31: 0.0163 S32: -0.0306 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 672 A 736 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6019 1.6338 -19.5503 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0255 REMARK 3 T33: 0.0124 T12: 0.0073 REMARK 3 T13: 0.0045 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.8559 L22: 2.1984 REMARK 3 L33: 2.9125 L12: 0.1708 REMARK 3 L13: 0.3853 L23: 0.3536 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.0231 S13: 0.0612 REMARK 3 S21: 0.1018 S22: -0.0160 S23: 0.0621 REMARK 3 S31: 0.0244 S32: -0.1347 S33: 0.0391 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 579 B 662 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5301 3.4866 10.9766 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0031 REMARK 3 T33: 0.0172 T12: 0.0037 REMARK 3 T13: -0.0072 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.1843 L22: 1.6685 REMARK 3 L33: 1.0623 L12: 1.0371 REMARK 3 L13: 0.5234 L23: -0.0735 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.0533 S13: -0.0584 REMARK 3 S21: -0.1159 S22: -0.0264 S23: 0.0169 REMARK 3 S31: -0.0054 S32: -0.0131 S33: 0.0273 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 672 B 736 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7108 15.3333 13.2421 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0354 REMARK 3 T33: 0.0096 T12: 0.0095 REMARK 3 T13: -0.0040 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.1983 L22: 2.4217 REMARK 3 L33: 2.1018 L12: 0.3188 REMARK 3 L13: -0.8432 L23: 0.2612 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.1044 S13: -0.0254 REMARK 3 S21: 0.0999 S22: 0.0504 S23: 0.0294 REMARK 3 S31: 0.0134 S32: 0.0593 S33: -0.0613 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2127 REMARK 3 RESIDUE RANGE : B 2001 B 2107 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.1165 REMARK 3 T33: 0.1165 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. HYDROGENS HAVE BEEN USED IF REMARK 3 PRESENT IN THE INPUT. RESIDUES 663-671 ARE DISORDERED REMARK 4 REMARK 4 5AG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1290062859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23941 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1CVR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M (NH4)2SO4, 10% PEG REMARK 280 300 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.87000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 575 REMARK 465 PRO A 576 REMARK 465 THR A 577 REMARK 465 LEU A 578 REMARK 465 THR A 663 REMARK 465 SER A 664 REMARK 465 HIS A 664A REMARK 465 HIS A 664B REMARK 465 HIS A 664C REMARK 465 HIS A 664D REMARK 465 HIS A 664E REMARK 465 HIS A 664F REMARK 465 ILE A 665 REMARK 465 ALA A 666 REMARK 465 ASP A 667 REMARK 465 VAL A 668 REMARK 465 ALA A 669 REMARK 465 ASN A 670 REMARK 465 ASP A 671 REMARK 465 GLY B 575 REMARK 465 PRO B 576 REMARK 465 THR B 577 REMARK 465 LEU B 578 REMARK 465 THR B 663 REMARK 465 SER B 664 REMARK 465 HIS B 664A REMARK 465 HIS B 664B REMARK 465 HIS B 664C REMARK 465 HIS B 664D REMARK 465 HIS B 664E REMARK 465 HIS B 664F REMARK 465 ILE B 665 REMARK 465 ALA B 666 REMARK 465 ASP B 667 REMARK 465 VAL B 668 REMARK 465 ALA B 669 REMARK 465 ASN B 670 REMARK 465 ASP B 671 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2021 O HOH A 2056 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 700 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 616 100.08 -26.33 REMARK 500 PRO A 673 42.67 -92.19 REMARK 500 SER A 687 94.52 -162.79 REMARK 500 ASN A 707 -56.11 76.11 REMARK 500 PRO B 673 49.09 -84.86 REMARK 500 ASN B 707 -47.03 77.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1737 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1738 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1739 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1737 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1738 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1740 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1741 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AG9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MUTANT (665SXA) C-TERMINAL DOMAIN OF RGPB REMARK 900 RELATED ID: 5AGB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MUTATED (666I6H) C-TERMINAL DOMAIN OF RGPB REMARK 999 REMARK 999 SEQUENCE REMARK 999 HEXAHISTIDINE TAG INSERTED AFTER SER 664 FIRST TWO REMARK 999 RESIDUES ARE REMANENT OF THE ENGINEERED 3C PROTEASE SITE DBREF 5AG8 A 577 736 UNP P95493 CPG2_PORGI 577 736 DBREF 5AG8 B 577 736 UNP P95493 CPG2_PORGI 577 736 SEQADV 5AG8 GLY A 575 UNP P95493 EXPRESSION TAG SEQADV 5AG8 PRO A 576 UNP P95493 EXPRESSION TAG SEQADV 5AG8 HIS A 664A UNP P95493 INSERTION SEQADV 5AG8 HIS A 664B UNP P95493 INSERTION SEQADV 5AG8 HIS A 664C UNP P95493 INSERTION SEQADV 5AG8 HIS A 664D UNP P95493 INSERTION SEQADV 5AG8 HIS A 664E UNP P95493 INSERTION SEQADV 5AG8 HIS A 664F UNP P95493 INSERTION SEQADV 5AG8 GLY B 575 UNP P95493 EXPRESSION TAG SEQADV 5AG8 PRO B 576 UNP P95493 EXPRESSION TAG SEQADV 5AG8 HIS B 664A UNP P95493 INSERTION SEQADV 5AG8 HIS B 664B UNP P95493 INSERTION SEQADV 5AG8 HIS B 664C UNP P95493 INSERTION SEQADV 5AG8 HIS B 664D UNP P95493 INSERTION SEQADV 5AG8 HIS B 664E UNP P95493 INSERTION SEQADV 5AG8 HIS B 664F UNP P95493 INSERTION SEQRES 1 A 168 GLY PRO THR LEU VAL PRO THR LYS MET GLN VAL THR ALA SEQRES 2 A 168 PRO ALA ASN ILE SER ALA SER ALA GLN THR PHE GLU VAL SEQRES 3 A 168 ALA CYS ASP TYR ASN GLY ALA ILE ALA THR LEU SER ASP SEQRES 4 A 168 ASP GLY ASP MET VAL GLY THR ALA ILE VAL LYS ASP GLY SEQRES 5 A 168 LYS ALA ILE ILE LYS LEU ASN GLU SER ILE ALA ASP GLU SEQRES 6 A 168 THR ASN LEU THR LEU THR VAL VAL GLY TYR ASN LYS VAL SEQRES 7 A 168 THR VAL ILE LYS ASP VAL LYS VAL GLU GLY THR SER HIS SEQRES 8 A 168 HIS HIS HIS HIS HIS ILE ALA ASP VAL ALA ASN ASP LYS SEQRES 9 A 168 PRO TYR THR VAL ALA VAL SER GLY LYS THR ILE THR VAL SEQRES 10 A 168 GLU SER PRO ALA ALA GLY LEU THR ILE PHE ASP MET ASN SEQRES 11 A 168 GLY ARG ARG VAL ALA THR ALA LYS ASN ARG MET VAL PHE SEQRES 12 A 168 GLU ALA GLN ASN GLY VAL TYR ALA VAL ARG ILE ALA THR SEQRES 13 A 168 GLU GLY LYS THR TYR THR GLU LYS VAL ILE VAL LYS SEQRES 1 B 168 GLY PRO THR LEU VAL PRO THR LYS MET GLN VAL THR ALA SEQRES 2 B 168 PRO ALA ASN ILE SER ALA SER ALA GLN THR PHE GLU VAL SEQRES 3 B 168 ALA CYS ASP TYR ASN GLY ALA ILE ALA THR LEU SER ASP SEQRES 4 B 168 ASP GLY ASP MET VAL GLY THR ALA ILE VAL LYS ASP GLY SEQRES 5 B 168 LYS ALA ILE ILE LYS LEU ASN GLU SER ILE ALA ASP GLU SEQRES 6 B 168 THR ASN LEU THR LEU THR VAL VAL GLY TYR ASN LYS VAL SEQRES 7 B 168 THR VAL ILE LYS ASP VAL LYS VAL GLU GLY THR SER HIS SEQRES 8 B 168 HIS HIS HIS HIS HIS ILE ALA ASP VAL ALA ASN ASP LYS SEQRES 9 B 168 PRO TYR THR VAL ALA VAL SER GLY LYS THR ILE THR VAL SEQRES 10 B 168 GLU SER PRO ALA ALA GLY LEU THR ILE PHE ASP MET ASN SEQRES 11 B 168 GLY ARG ARG VAL ALA THR ALA LYS ASN ARG MET VAL PHE SEQRES 12 B 168 GLU ALA GLN ASN GLY VAL TYR ALA VAL ARG ILE ALA THR SEQRES 13 B 168 GLU GLY LYS THR TYR THR GLU LYS VAL ILE VAL LYS HET SO4 A1737 5 HET SO4 A1738 5 HET SO4 A1739 5 HET GOL A1740 6 HET GOL A1741 6 HET SO4 B1737 5 HET SO4 B1738 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 5(O4 S 2-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 10 HOH *234(H2 O) SHEET 1 AA 3 VAL A 585 THR A 586 0 SHEET 2 AA 3 THR A 597 CYS A 602 -1 O ALA A 601 N THR A 586 SHEET 3 AA 3 LYS A 627 LYS A 631 -1 O ALA A 628 N VAL A 600 SHEET 1 AB 5 ASN A 590 SER A 592 0 SHEET 2 AB 5 VAL A 654 GLU A 661 1 O LYS A 659 N ILE A 591 SHEET 3 AB 5 ASN A 641 VAL A 647 -1 O LEU A 642 N VAL A 658 SHEET 4 AB 5 ILE A 608 ASP A 613 -1 O ILE A 608 N VAL A 647 SHEET 5 AB 5 ASP A 616 ILE A 622 -1 O ASP A 616 N ASP A 613 SHEET 1 AC 2 THR A 675 SER A 679 0 SHEET 2 AC 2 THR A 682 PHE A 695 -1 O THR A 682 N SER A 679 SHEET 1 AD 2 ARG A 701 GLU A 712 0 SHEET 2 AD 2 THR A 682 PHE A 695 -1 O ILE A 683 N PHE A 711 SHEET 1 AE 4 LYS A 727 VAL A 735 0 SHEET 2 AE 4 GLY A 716 THR A 724 -1 O GLY A 716 N VAL A 735 SHEET 3 AE 4 THR A 682 PHE A 695 -1 O GLY A 691 N ALA A 723 SHEET 4 AE 4 ARG A 701 GLU A 712 -1 N VAL A 702 O ILE A 694 SHEET 1 AF 4 LYS A 727 VAL A 735 0 SHEET 2 AF 4 GLY A 716 THR A 724 -1 O GLY A 716 N VAL A 735 SHEET 3 AF 4 THR A 682 PHE A 695 -1 O GLY A 691 N ALA A 723 SHEET 4 AF 4 THR A 675 SER A 679 -1 O THR A 675 N GLU A 686 SHEET 1 BA 3 VAL B 585 THR B 586 0 SHEET 2 BA 3 THR B 597 CYS B 602 -1 O ALA B 601 N THR B 586 SHEET 3 BA 3 LYS B 627 LYS B 631 -1 O ALA B 628 N VAL B 600 SHEET 1 BB 5 ASN B 590 SER B 592 0 SHEET 2 BB 5 VAL B 654 GLU B 661 1 O LYS B 659 N ILE B 591 SHEET 3 BB 5 ASN B 641 VAL B 647 -1 O LEU B 642 N VAL B 658 SHEET 4 BB 5 ILE B 608 ASP B 613 -1 O ILE B 608 N VAL B 647 SHEET 5 BB 5 ASP B 616 ILE B 622 -1 O ASP B 616 N ASP B 613 SHEET 1 BC 2 THR B 675 SER B 679 0 SHEET 2 BC 2 THR B 682 PHE B 695 -1 O THR B 682 N SER B 679 SHEET 1 BD 2 ARG B 701 GLU B 712 0 SHEET 2 BD 2 THR B 682 PHE B 695 -1 O ILE B 683 N PHE B 711 SHEET 1 BE 4 LYS B 727 VAL B 735 0 SHEET 2 BE 4 GLY B 716 THR B 724 -1 O GLY B 716 N VAL B 735 SHEET 3 BE 4 THR B 682 PHE B 695 -1 O GLY B 691 N ALA B 723 SHEET 4 BE 4 ARG B 701 GLU B 712 -1 N VAL B 702 O ILE B 694 SHEET 1 BF 4 LYS B 727 VAL B 735 0 SHEET 2 BF 4 GLY B 716 THR B 724 -1 O GLY B 716 N VAL B 735 SHEET 3 BF 4 THR B 682 PHE B 695 -1 O GLY B 691 N ALA B 723 SHEET 4 BF 4 THR B 675 SER B 679 -1 O THR B 675 N GLU B 686 SITE 1 AC1 7 HOH A2099 HOH A2100 HOH A2101 HOH A2125 SITE 2 AC1 7 HOH A2126 ASN B 707 ARG B 708 SITE 1 AC2 7 ASN A 707 ARG A 708 HOH A2102 PRO B 580 SITE 2 AC2 7 LYS B 706 ASN B 707 HOH B2061 SITE 1 AC3 5 GLU A 661 GLY A 662 ARG A 721 THR A 728 SITE 2 AC3 5 HOH A2114 SITE 1 AC4 6 GLU B 661 GLY B 662 ARG B 721 ALA B 723 SITE 2 AC4 6 THR B 728 HOH B2100 SITE 1 AC5 4 PRO B 588 ALA B 589 ASN B 590 HOH B2107 SITE 1 AC6 5 PRO A 588 ALA A 589 ASN A 590 HOH A2011 SITE 2 AC6 5 HOH A2127 SITE 1 AC7 4 ASP A 696 ASN A 698 ARG A 700 ASN B 641 CRYST1 51.470 61.740 55.300 90.00 117.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019429 0.000000 0.010239 0.00000 SCALE2 0.000000 0.016197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020441 0.00000