HEADER TRANSFERASE 29-JAN-15 5AGA TITLE CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF HUMAN DNA TITLE 2 POLYMERASE THETA IN COMPLEX WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE THETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICASE DOMAIN, RESIDUES 67-894; COMPND 5 SYNONYM: DNA POLYMERASE ETA; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE, POLQ, DNA REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,C.D.O.COOPER,H.AITKENHEAD,D.M.PINKAS,K.KUPINSKA, AUTHOR 2 N.BURGESS-BROWN,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA, AUTHOR 3 O.GILEADI REVDAT 2 16-DEC-15 5AGA 1 JRNL REVDAT 1 25-FEB-15 5AGA 0 JRNL AUTH J.A.NEWMAN,C.D.O.COOPER,H.AITKENHEAD,O.GILEADI JRNL TITL STRUCTURE OF THE HELICASE DOMAIN OF DNA POLYMERASE THETA JRNL TITL 2 REVEALS A POSSIBLE ROLE IN THE MICROHOMOLOGY-MEDIATED END- JRNL TITL 3 JOINING PATHWAY. JRNL REF STRUCTURE V. 23 2319 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26636256 JRNL DOI 10.1016/J.STR.2015.10.014 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.900 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.632 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.34 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.93 REMARK 3 NUMBER OF REFLECTIONS : 26876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2198 REMARK 3 R VALUE (WORKING SET) : 0.2174 REMARK 3 FREE R VALUE : 0.2644 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6384 - 6.2436 0.97 2639 149 0.1964 0.2175 REMARK 3 2 6.2436 - 4.9576 0.99 2599 138 0.2275 0.2600 REMARK 3 3 4.9576 - 4.3314 0.99 2575 134 0.1785 0.2434 REMARK 3 4 4.3314 - 3.9356 0.98 2515 132 0.1946 0.2664 REMARK 3 5 3.9356 - 3.6536 1.00 2578 124 0.2205 0.2960 REMARK 3 6 3.6536 - 3.4383 1.00 2525 154 0.2284 0.2989 REMARK 3 7 3.4383 - 3.2661 1.00 2522 143 0.2529 0.3231 REMARK 3 8 3.2661 - 3.1240 1.00 2565 146 0.2930 0.3401 REMARK 3 9 3.1240 - 3.0038 1.00 2532 126 0.3145 0.3583 REMARK 3 10 3.0038 - 2.9001 0.96 2467 113 0.3453 0.4004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.40 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.09 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6244 REMARK 3 ANGLE : 0.533 8457 REMARK 3 CHIRALITY : 0.021 990 REMARK 3 PLANARITY : 0.002 1062 REMARK 3 DIHEDRAL : 12.485 2272 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-15. REMARK 100 THE PDBE ID CODE IS EBI-62891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 2M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.90 REMARK 200 RESOLUTION RANGE LOW (A) : 46.63 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.6 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.3 REMARK 200 R MERGE FOR SHELL (I) : 1.09 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.2M POTASSIUM REMARK 280 CITRATE TRIBASIC REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.35500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.21500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.35500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.21500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.35500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.21500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.35500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.21500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 132.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 132.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 65 REMARK 465 MET A 66 REMARK 465 LEU A 251 REMARK 465 ALA A 252 REMARK 465 SER A 253 REMARK 465 SER A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 369 REMARK 465 GLY A 370 REMARK 465 LEU A 371 REMARK 465 VAL A 372 REMARK 465 LYS A 373 REMARK 465 PRO A 374 REMARK 465 ARG A 522 REMARK 465 GLU A 523 REMARK 465 LYS A 564 REMARK 465 GLU A 565 REMARK 465 GLY A 566 REMARK 465 LYS A 567 REMARK 465 GLN A 568 REMARK 465 GLY A 569 REMARK 465 ILE A 570 REMARK 465 GLN A 571 REMARK 465 ARG A 572 REMARK 465 ASN A 573 REMARK 465 GLN A 574 REMARK 465 GLU A 575 REMARK 465 SER A 576 REMARK 465 VAL A 577 REMARK 465 GLN A 578 REMARK 465 LEU A 579 REMARK 465 ALA A 600 REMARK 465 SER A 601 REMARK 465 ASP A 602 REMARK 465 GLY A 603 REMARK 465 THR A 604 REMARK 465 ALA A 845 REMARK 465 VAL A 846 REMARK 465 ASP A 847 REMARK 465 GLU A 848 REMARK 465 GLU A 849 REMARK 465 GLU A 850 REMARK 465 VAL A 892 REMARK 465 GLU A 893 REMARK 465 MET A 894 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 LYS A 78 CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 MET A 136 CG SD CE REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 LYS A 167 CD CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 ASP A 322 CG OD1 OD2 REMARK 470 LYS A 348 CE NZ REMARK 470 GLN A 367 CG CD OE1 NE2 REMARK 470 ARG A 467 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 484 CG CD CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 ARG A 516 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 583 CG CD OE1 OE2 REMARK 470 GLU A 599 CG CD OE1 OE2 REMARK 470 LYS A 701 CG CD CE NZ REMARK 470 ARG A 705 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 840 CG CD CE NZ REMARK 470 LYS A 844 CG CD CE NZ REMARK 470 GLU A 854 CG CD OE1 OE2 REMARK 470 GLU A 855 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 169 -169.99 -123.63 REMARK 500 ASP A 185 -46.77 -131.53 REMARK 500 LYS A 206 43.68 -94.12 REMARK 500 GLU A 217 72.64 55.46 REMARK 500 GLN A 248 71.48 58.01 REMARK 500 ALA A 258 -122.36 58.14 REMARK 500 SER A 265 -164.57 -161.37 REMARK 500 THR A 267 102.98 -59.77 REMARK 500 LEU A 293 75.96 -101.95 REMARK 500 ARG A 311 131.58 -170.06 REMARK 500 GLU A 323 77.48 51.22 REMARK 500 ASP A 324 41.53 -88.92 REMARK 500 GLU A 376 -166.69 -104.10 REMARK 500 ILE A 381 -152.93 -129.65 REMARK 500 ARG A 396 42.68 -84.62 REMARK 500 HIS A 416 112.20 -161.08 REMARK 500 THR A 443 -168.89 -106.26 REMARK 500 VAL A 486 -56.64 -124.67 REMARK 500 LYS A 607 80.34 60.27 REMARK 500 ALA A 704 -109.38 51.43 REMARK 500 ARG A 705 17.31 56.53 REMARK 500 HIS A 710 49.23 -88.37 REMARK 500 ASN A 803 -162.01 -100.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1894 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 802 O REMARK 620 2 VAL A 797 O 81.6 REMARK 620 3 VAL A 799 O 77.8 64.0 REMARK 620 4 SER A 800 O 99.0 136.4 73.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A1892 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A1893 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A1894 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1895 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST TWO RESIDUES REMAIN AFTER CLEAVAGE OF PURIFICATION REMARK 999 TAG DBREF 5AGA A 67 894 UNP O75417 DPOLQ_HUMAN 67 894 SEQADV 5AGA SER A 65 UNP O75417 EXPRESSION TAG SEQADV 5AGA MET A 66 UNP O75417 EXPRESSION TAG SEQRES 1 A 830 SER MET ASP LYS LEU LEU LEU ALA ASN TRP GLY LEU PRO SEQRES 2 A 830 LYS ALA VAL LEU GLU LYS TYR HIS SER PHE GLY VAL LYS SEQRES 3 A 830 LYS MET PHE GLU TRP GLN ALA GLU CYS LEU LEU LEU GLY SEQRES 4 A 830 GLN VAL LEU GLU GLY LYS ASN LEU VAL TYR SER ALA PRO SEQRES 5 A 830 THR SER ALA GLY LYS THR LEU VAL ALA GLU LEU LEU ILE SEQRES 6 A 830 LEU LYS ARG VAL LEU GLU MET ARG LYS LYS ALA LEU PHE SEQRES 7 A 830 ILE LEU PRO PHE VAL SER VAL ALA LYS GLU LYS LYS TYR SEQRES 8 A 830 TYR LEU GLN SER LEU PHE GLN GLU VAL GLY ILE LYS VAL SEQRES 9 A 830 ASP GLY TYR MET GLY SER THR SER PRO SER ARG HIS PHE SEQRES 10 A 830 SER SER LEU ASP ILE ALA VAL CYS THR ILE GLU ARG ALA SEQRES 11 A 830 ASN GLY LEU ILE ASN ARG LEU ILE GLU GLU ASN LYS MET SEQRES 12 A 830 ASP LEU LEU GLY MET VAL VAL VAL ASP GLU LEU HIS MET SEQRES 13 A 830 LEU GLY ASP SER HIS ARG GLY TYR LEU LEU GLU LEU LEU SEQRES 14 A 830 LEU THR LYS ILE CYS TYR ILE THR ARG LYS SER ALA SER SEQRES 15 A 830 CYS GLN ALA ASP LEU ALA SER SER LEU SER ASN ALA VAL SEQRES 16 A 830 GLN ILE VAL GLY MET SER ALA THR LEU PRO ASN LEU GLU SEQRES 17 A 830 LEU VAL ALA SER TRP LEU ASN ALA GLU LEU TYR HIS THR SEQRES 18 A 830 ASP PHE ARG PRO VAL PRO LEU LEU GLU SER VAL LYS VAL SEQRES 19 A 830 GLY ASN SER ILE TYR ASP SER SER MET LYS LEU VAL ARG SEQRES 20 A 830 GLU PHE GLU PRO MET LEU GLN VAL LYS GLY ASP GLU ASP SEQRES 21 A 830 HIS VAL VAL SER LEU CYS TYR GLU THR ILE CYS ASP ASN SEQRES 22 A 830 HIS SER VAL LEU LEU PHE CYS PRO SER LYS LYS TRP CYS SEQRES 23 A 830 GLU LYS LEU ALA ASP ILE ILE ALA ARG GLU PHE TYR ASN SEQRES 24 A 830 LEU HIS HIS GLN ALA GLU GLY LEU VAL LYS PRO SER GLU SEQRES 25 A 830 CYS PRO PRO VAL ILE LEU GLU GLN LYS GLU LEU LEU GLU SEQRES 26 A 830 VAL MET ASP GLN LEU ARG ARG LEU PRO SER GLY LEU ASP SEQRES 27 A 830 SER VAL LEU GLN LYS THR VAL PRO TRP GLY VAL ALA PHE SEQRES 28 A 830 HIS HIS ALA GLY LEU THR PHE GLU GLU ARG ASP ILE ILE SEQRES 29 A 830 GLU GLY ALA PHE ARG GLN GLY LEU ILE ARG VAL LEU ALA SEQRES 30 A 830 ALA THR SER THR LEU SER SER GLY VAL ASN LEU PRO ALA SEQRES 31 A 830 ARG ARG VAL ILE ILE ARG THR PRO ILE PHE GLY GLY ARG SEQRES 32 A 830 PRO LEU ASP ILE LEU THR TYR LYS GLN MET VAL GLY ARG SEQRES 33 A 830 ALA GLY ARG LYS GLY VAL ASP THR VAL GLY GLU SER ILE SEQRES 34 A 830 LEU ILE CYS LYS ASN SER GLU LYS SER LYS GLY ILE ALA SEQRES 35 A 830 LEU LEU GLN GLY SER LEU LYS PRO VAL ARG SER CYS LEU SEQRES 36 A 830 GLN ARG ARG GLU GLY GLU GLU VAL THR GLY SER MET ILE SEQRES 37 A 830 ARG ALA ILE LEU GLU ILE ILE VAL GLY GLY VAL ALA SER SEQRES 38 A 830 THR SER GLN ASP MET HIS THR TYR ALA ALA CYS THR PHE SEQRES 39 A 830 LEU ALA ALA SER MET LYS GLU GLY LYS GLN GLY ILE GLN SEQRES 40 A 830 ARG ASN GLN GLU SER VAL GLN LEU GLY ALA ILE GLU ALA SEQRES 41 A 830 CYS VAL MET TRP LEU LEU GLU ASN GLU PHE ILE GLN SER SEQRES 42 A 830 THR GLU ALA SER ASP GLY THR GLU GLY LYS VAL TYR HIS SEQRES 43 A 830 PRO THR HIS LEU GLY SER ALA THR LEU SER SER SER LEU SEQRES 44 A 830 SER PRO ALA ASP THR LEU ASP ILE PHE ALA ASP LEU GLN SEQRES 45 A 830 ARG ALA MET LYS GLY PHE VAL LEU GLU ASN ASP LEU HIS SEQRES 46 A 830 ILE LEU TYR LEU VAL THR PRO MET PHE GLU ASP TRP THR SEQRES 47 A 830 THR ILE ASP TRP TYR ARG PHE PHE CYS LEU TRP GLU LYS SEQRES 48 A 830 LEU PRO THR SER MET LYS ARG VAL ALA GLU LEU VAL GLY SEQRES 49 A 830 VAL GLU GLU GLY PHE LEU ALA ARG CYS VAL LYS GLY LYS SEQRES 50 A 830 VAL VAL ALA ARG THR GLU ARG GLN HIS ARG GLN MET ALA SEQRES 51 A 830 ILE HIS LYS ARG PHE PHE THR SER LEU VAL LEU LEU ASP SEQRES 52 A 830 LEU ILE SER GLU VAL PRO LEU ARG GLU ILE ASN GLN LYS SEQRES 53 A 830 TYR GLY CYS ASN ARG GLY GLN ILE GLN SER LEU GLN GLN SEQRES 54 A 830 SER ALA ALA VAL TYR ALA GLY MET ILE THR VAL PHE SER SEQRES 55 A 830 ASN ARG LEU GLY TRP HIS ASN MET GLU LEU LEU LEU SER SEQRES 56 A 830 GLN PHE GLN LYS ARG LEU THR PHE GLY ILE GLN ARG GLU SEQRES 57 A 830 LEU CYS ASP LEU VAL ARG VAL SER LEU LEU ASN ALA GLN SEQRES 58 A 830 ARG ALA ARG VAL LEU TYR ALA SER GLY PHE HIS THR VAL SEQRES 59 A 830 ALA ASP LEU ALA ARG ALA ASN ILE VAL GLU VAL GLU VAL SEQRES 60 A 830 ILE LEU LYS ASN ALA VAL PRO PHE LYS SER ALA ARG LYS SEQRES 61 A 830 ALA VAL ASP GLU GLU GLU GLU ALA VAL GLU GLU ARG ARG SEQRES 62 A 830 ASN MET ARG THR ILE TRP VAL THR GLY ARG LYS GLY LEU SEQRES 63 A 830 THR GLU ARG GLU ALA ALA ALA LEU ILE VAL GLU GLU ALA SEQRES 64 A 830 ARG MET ILE LEU GLN GLN ASP LEU VAL GLU MET HET ANP A1892 31 HET FLC A1893 13 HET K A1894 1 HET MG A1895 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM FLC CITRATE ANION HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 FLC C6 H5 O7 3- FORMUL 4 K K 1+ FORMUL 5 MG MG 2+ FORMUL 6 HOH *39(H2 O) HELIX 1 1 LEU A 71 TRP A 74 5 4 HELIX 2 2 PRO A 77 SER A 86 1 10 HELIX 3 3 PHE A 93 LEU A 102 1 10 HELIX 4 4 GLY A 120 MET A 136 1 17 HELIX 5 5 PHE A 146 GLN A 162 1 17 HELIX 6 6 GLU A 163 GLY A 165 5 3 HELIX 7 7 HIS A 180 LEU A 184 5 5 HELIX 8 8 ILE A 191 GLU A 204 1 14 HELIX 9 9 LYS A 206 ASP A 208 5 3 HELIX 10 10 GLU A 217 GLY A 222 5 6 HELIX 11 11 TYR A 228 SER A 244 1 17 HELIX 12 12 ALA A 245 GLN A 248 5 4 HELIX 13 13 ASN A 270 LEU A 278 1 9 HELIX 14 14 HIS A 325 ASP A 336 1 12 HELIX 15 15 SER A 346 GLN A 367 1 22 HELIX 16 16 GLU A 383 ARG A 396 1 14 HELIX 17 17 ASP A 402 VAL A 409 1 8 HELIX 18 18 THR A 421 GLN A 434 1 14 HELIX 19 19 THR A 443 SER A 448 1 6 HELIX 20 20 ASP A 470 GLY A 479 1 10 HELIX 21 21 GLU A 500 GLY A 510 1 11 HELIX 22 22 THR A 528 GLY A 541 1 14 HELIX 23 23 THR A 546 THR A 557 1 12 HELIX 24 24 GLY A 580 ASN A 592 1 13 HELIX 25 25 THR A 612 SER A 621 1 10 HELIX 26 26 SER A 624 MET A 639 1 16 HELIX 27 27 ASP A 647 VAL A 654 1 8 HELIX 28 28 ASP A 665 LYS A 675 1 11 HELIX 29 29 PRO A 677 GLY A 688 1 12 HELIX 30 30 GLU A 690 LYS A 699 1 10 HELIX 31 31 ARG A 711 ILE A 729 1 19 HELIX 32 32 PRO A 733 GLY A 742 1 10 HELIX 33 33 ASN A 744 LEU A 769 1 26 HELIX 34 34 TRP A 771 SER A 779 1 9 HELIX 35 35 GLN A 780 GLY A 788 1 9 HELIX 36 36 GLN A 790 ASP A 795 5 6 HELIX 37 37 ASP A 795 VAL A 799 5 5 HELIX 38 38 ASN A 803 ALA A 812 1 10 HELIX 39 39 THR A 817 ARG A 823 1 7 HELIX 40 40 ASN A 825 ASN A 835 1 11 HELIX 41 41 THR A 871 ASP A 890 1 20 SHEET 1 AA 7 VAL A 168 TYR A 171 0 SHEET 2 AA 7 ILE A 186 THR A 190 1 O ILE A 186 N ASP A 169 SHEET 3 AA 7 LYS A 139 LEU A 144 1 O ALA A 140 N ALA A 187 SHEET 4 AA 7 LEU A 210 VAL A 215 1 N GLY A 211 O LYS A 139 SHEET 5 AA 7 GLN A 260 SER A 265 1 O GLN A 260 N VAL A 213 SHEET 6 AA 7 LEU A 111 SER A 114 1 O LEU A 111 N GLY A 263 SHEET 7 AA 7 GLU A 281 HIS A 284 1 O GLU A 281 N VAL A 112 SHEET 1 AB 8 LEU A 309 GLU A 312 0 SHEET 2 AB 8 SER A 301 TYR A 303 -1 O ILE A 302 N VAL A 310 SHEET 3 AB 8 LEU A 292 VAL A 298 -1 O VAL A 296 N TYR A 303 SHEET 4 AB 8 GLY A 490 CYS A 496 1 O GLY A 490 N LEU A 293 SHEET 5 AB 8 ARG A 456 ILE A 459 1 O VAL A 457 N ILE A 493 SHEET 6 AB 8 VAL A 340 PHE A 343 1 O LEU A 341 N ILE A 458 SHEET 7 AB 8 VAL A 439 ALA A 442 1 O LEU A 440 N LEU A 342 SHEET 8 AB 8 VAL A 413 HIS A 416 1 O ALA A 414 N ALA A 441 SHEET 1 AC 2 ILE A 463 PHE A 464 0 SHEET 2 AC 2 ARG A 467 PRO A 468 -1 O ARG A 467 N PHE A 464 SHEET 1 AD 2 ILE A 595 THR A 598 0 SHEET 2 AD 2 VAL A 608 PRO A 611 -1 O VAL A 608 N THR A 598 SSBOND 1 CYS A 247 CYS A 377 1555 7555 2.03 LINK O2G ANP A1892 MG MG A1895 1555 1555 2.88 LINK K K A1894 O SER A 800 1555 1555 2.93 LINK K K A1894 O VAL A 797 1555 1555 3.28 LINK K K A1894 O VAL A 799 1555 1555 2.84 LINK K K A1894 O LEU A 802 1555 1555 2.89 SITE 1 AC1 11 VAL A 89 LYS A 91 GLN A 96 THR A 117 SITE 2 AC1 11 SER A 118 ALA A 119 GLY A 120 LYS A 121 SITE 3 AC1 11 THR A 122 LEU A 123 MG A1895 SITE 1 AC2 3 PRO A 410 TRP A 411 GLY A 412 SITE 1 AC3 5 PHE A 787 VAL A 797 VAL A 799 SER A 800 SITE 2 AC3 5 LEU A 802 SITE 1 AC4 3 LYS A 121 ASP A 216 ANP A1892 CRYST1 116.170 132.710 156.430 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008608 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006393 0.00000