HEADER LIGASE 02-FEB-15 5AGH TITLE CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS TITLE 2 MUTANT K510A COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTENTIAL CYTOSOLIC LEUCYL TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EDITING DOMAIN (CP1), UNP RESIDUES 280-530; COMPND 5 EC: 6.1.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS; SOURCE 3 ORGANISM_TAXID: 237561; SOURCE 4 STRAIN: SC5314; SOURCE 5 ATCC: MYA-2876; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DH10B; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21D KEYWDS LIGASE, AMINOACYL-TRNA SYNTHETASE, AMINOACYLATION, PROTEIN SYNTHESIS, KEYWDS 2 PROOF-READING MECHANISMS, ANTIFUNGAL TARGET EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHAO,A.PALENCIA,E.SEIRADAKE,Z.GHAEMI,Z.LUTHEY-SCHULTEN,S.CUSACK, AUTHOR 2 S.A.MARTINIS REVDAT 4 10-JAN-24 5AGH 1 REMARK SHEET REVDAT 3 28-OCT-15 5AGH 1 JRNL REVDAT 2 29-JUL-15 5AGH 1 JRNL REVDAT 1 01-JUL-15 5AGH 0 JRNL AUTH H.ZHAO,A.PALENCIA,E.SEIRADAKE,Z.GHAEMI,S.CUSACK, JRNL AUTH 2 Z.LUTHEY-SCHULTEN,S.MARTINIS JRNL TITL ANALYSIS OF THE RESISTANCE MECHANISM OF A BENZOXABOROLE JRNL TITL 2 INHIBITOR REVEALS INSIGHT INTO THE LEUCYL-TRNA SYNTHETASE JRNL TITL 3 EDITING MECHANISM. JRNL REF ACS CHEM.BIOL. V. 10 2277 2015 JRNL REFN ISSN 1554-8929 JRNL PMID 26172575 JRNL DOI 10.1021/ACSCHEMBIO.5B00291 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 18676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 747 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1993 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1906 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2701 ; 1.441 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4412 ; 0.757 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 5.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;40.789 ;25.281 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;14.649 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;11.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2246 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 423 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 986 ; 1.981 ; 2.443 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 983 ; 1.979 ; 2.438 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1228 ; 3.226 ; 3.638 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1006 ; 2.619 ; 2.887 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 529 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1860 -8.6920 -48.1720 REMARK 3 T TENSOR REMARK 3 T11: 0.0936 T22: 0.1454 REMARK 3 T33: 0.2440 T12: -0.0666 REMARK 3 T13: 0.0234 T23: -0.1046 REMARK 3 L TENSOR REMARK 3 L11: 0.0886 L22: 1.6452 REMARK 3 L33: 5.9620 L12: -0.1693 REMARK 3 L13: -0.6552 L23: 0.1690 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0779 S13: 0.0933 REMARK 3 S21: -0.3173 S22: 0.3875 S23: -0.3730 REMARK 3 S31: 0.2067 S32: 0.3655 S33: -0.3940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 5AGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290059068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : DENZO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 64.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WFG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.0, 24% PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.67450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.55200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.67450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.55200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 278 REMARK 465 ASN A 361 REMARK 465 LEU A 362 REMARK 465 THR A 363 REMARK 465 PRO A 364 REMARK 465 GLU A 365 REMARK 465 GLU A 530 REMARK 465 LEU A 531 REMARK 465 GLU A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 529 CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 315 O HOH A 2025 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 327 -172.73 176.43 REMARK 500 TYR A 389 -4.61 71.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1530 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AGI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS REMARK 900 MUTANT K510A IN COMPLEX WITH THE ADDUCT FORMED BY AN2690-AMP REMARK 900 RELATED ID: 5AGJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS REMARK 900 IN COMPLEX WITH THE ADDUCT AN2690-AMP REMARK 900 RELATED ID: 5AH5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF AGROBACTERIUM REMARK 900 RADIOBACTER K84 AGNB2 LEURS-TRNA-LEUAMS DBREF 5AGH A 280 530 UNP Q5A9A4 Q5A9A4_CANAL 280 530 SEQADV 5AGH MET A 278 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH GLY A 279 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH LEU A 531 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH GLU A 532 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH HIS A 533 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH HIS A 534 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH HIS A 535 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH HIS A 536 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH HIS A 537 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH HIS A 538 UNP Q5A9A4 EXPRESSION TAG SEQADV 5AGH GLU A 360 UNP Q5A9A4 GLN 360 CONFLICT SEQADV 5AGH ALA A 510 UNP Q5A9A4 LYS 510 ENGINEERED MUTATION SEQRES 1 A 261 MET GLY TYR VAL GLY ILE LYS ILE ARG LEU THR ASP VAL SEQRES 2 A 261 ALA PRO GLN ALA GLN GLU LEU PHE LYS LYS GLU SER LEU SEQRES 3 A 261 ASP VAL LYS GLU ASN LYS VAL TYR LEU VAL ALA ALA THR SEQRES 4 A 261 LEU ARG PRO GLU THR MET TYR GLY GLN THR CYS CYS PHE SEQRES 5 A 261 VAL SER PRO LYS ILE ASP TYR GLY VAL PHE ASP ALA GLY SEQRES 6 A 261 ASN GLY ASP TYR PHE ILE THR THR GLU ARG ALA PHE LYS SEQRES 7 A 261 ASN MET SER PHE GLU ASN LEU THR PRO GLU ARG GLY TYR SEQRES 8 A 261 TYR LYS PRO LEU PHE THR ILE ASN GLY LYS THR LEU ILE SEQRES 9 A 261 GLY SER ARG ILE ASP ALA PRO TYR ALA VAL ASN LYS ASN SEQRES 10 A 261 LEU ARG VAL LEU PRO MET GLU THR VAL LEU ALA THR LYS SEQRES 11 A 261 GLY THR GLY VAL VAL THR CYS VAL PRO SER ASP SER PRO SEQRES 12 A 261 ASP ASP PHE VAL THR THR ARG ASP LEU ALA ASN LYS PRO SEQRES 13 A 261 GLU TYR TYR GLY ILE GLU LYS ASP TRP VAL GLN THR ASP SEQRES 14 A 261 ILE VAL PRO ILE VAL HIS THR GLU LYS TYR GLY ASP LYS SEQRES 15 A 261 CYS ALA GLU PHE LEU VAL ASN ASP LEU LYS ILE GLN SER SEQRES 16 A 261 PRO LYS ASP SER VAL GLN LEU ALA ASN ALA LYS GLU LEU SEQRES 17 A 261 ALA TYR LYS GLU GLY PHE TYR ASN GLY THR MET LEU ILE SEQRES 18 A 261 GLY LYS TYR LYS GLY ASP LYS VAL GLU ASP ALA ALA PRO SEQRES 19 A 261 LYS VAL LYS GLN ASP LEU ILE ASP GLU GLY LEU ALA PHE SEQRES 20 A 261 VAL TYR ASN GLU PRO GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 21 A 261 HIS HET ACT A1529 4 HET ACT A1530 4 HETNAM ACT ACETATE ION FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 HOH *147(H2 O) HELIX 1 1 ALA A 291 GLU A 301 1 11 HELIX 2 2 ARG A 318 GLN A 325 5 8 HELIX 3 3 THR A 350 GLU A 360 1 11 HELIX 4 4 GLY A 377 ILE A 381 1 5 HELIX 5 5 SER A 419 LYS A 432 1 14 HELIX 6 6 LYS A 432 GLY A 437 1 6 HELIX 7 7 GLU A 439 VAL A 443 5 5 HELIX 8 8 LYS A 459 LEU A 468 1 10 HELIX 9 9 ASP A 475 GLY A 494 1 20 HELIX 10 10 LYS A 505 GLU A 520 1 16 SHEET 1 AA 5 PHE A 373 ASN A 376 0 SHEET 2 AA 5 ASP A 335 GLY A 342 -1 O TYR A 336 N ILE A 375 SHEET 3 AA 5 ASP A 345 THR A 349 -1 O ASP A 345 N ALA A 341 SHEET 4 AA 5 LYS A 309 THR A 316 1 O LYS A 309 N TYR A 346 SHEET 5 AA 5 TYR A 280 ASP A 289 -1 O VAL A 281 N THR A 316 SHEET 1 AB 2 PHE A 373 ASN A 376 0 SHEET 2 AB 2 LYS A 309 THR A 316 1 O LYS A 309 N TYR A 346 SHEET 1 AC 2 VAL A 451 HIS A 452 0 SHEET 2 AC 2 THR A 495 MET A 496 -1 O THR A 495 N HIS A 452 SITE 1 AC1 6 THR A 316 THR A 321 THR A 413 ASP A 422 SITE 2 AC1 6 HOH A2026 HOH A2147 SITE 1 AC2 4 ASP A 386 LYS A 500 TYR A 501 ASP A 516 CRYST1 89.349 41.104 67.264 90.00 106.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011192 0.000000 0.003360 0.00000 SCALE2 0.000000 0.024329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015522 0.00000