data_5AGQ # _entry.id 5AGQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5AGQ pdb_00005agq 10.2210/pdb5agq/pdb PDBE EBI-62809 ? ? WWPDB D_1290062809 ? ? BMRB 26517 ? ? # _pdbx_database_related.db_id 26517 _pdbx_database_related.details . _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AGQ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-02-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Anosova, I.' 1 'Melnik, S.' 2 'Tripsianes, K.' 3 'Kateb, F.' 4 'Grummt, I.' 5 'Sattler, M.' 6 # _citation.id primary _citation.title 'A Novel RNA Binding Surface of the Tam Domain of Tip5/Baz2A Mediates Epigenetic Regulation of Rrna Genes.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 43 _citation.page_first 5208 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25916849 _citation.pdbx_database_id_DOI 10.1093/NAR/GKV365 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Anosova, I.' 1 ? primary 'Melnik, S.' 2 ? primary 'Tripsianes, K.' 3 ? primary 'Kateb, F.' 4 ? primary 'Grummt, I.' 5 ? primary 'Sattler, M.' 6 ? # _cell.entry_id 5AGQ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AGQ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A' _entity.formula_weight 13417.299 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'TAM DOMAIN, RESIDUES 543-650' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TRANSCRIPTION TERMINATION FACTOR I-INTERACTING PROTEIN 5, TTF-I-INTERACTING PROTEIN 5, TIP5, HWALP3, HUMAN TIP5 BAZ2A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMERRRIATPEEVRLPLQHGWRREVRIKKGSHRWQGETWYYGPCGKRMKQFPEVIKYLSRNVVHSVRREHFSFSPRMPV GDFFEERDTPEGLQWVQLSAEEIPSRIQAITGS ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMERRRIATPEEVRLPLQHGWRREVRIKKGSHRWQGETWYYGPCGKRMKQFPEVIKYLSRNVVHSVRREHFSFSPRMPV GDFFEERDTPEGLQWVQLSAEEIPSRIQAITGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLU n 1 5 ARG n 1 6 ARG n 1 7 ARG n 1 8 ILE n 1 9 ALA n 1 10 THR n 1 11 PRO n 1 12 GLU n 1 13 GLU n 1 14 VAL n 1 15 ARG n 1 16 LEU n 1 17 PRO n 1 18 LEU n 1 19 GLN n 1 20 HIS n 1 21 GLY n 1 22 TRP n 1 23 ARG n 1 24 ARG n 1 25 GLU n 1 26 VAL n 1 27 ARG n 1 28 ILE n 1 29 LYS n 1 30 LYS n 1 31 GLY n 1 32 SER n 1 33 HIS n 1 34 ARG n 1 35 TRP n 1 36 GLN n 1 37 GLY n 1 38 GLU n 1 39 THR n 1 40 TRP n 1 41 TYR n 1 42 TYR n 1 43 GLY n 1 44 PRO n 1 45 CYS n 1 46 GLY n 1 47 LYS n 1 48 ARG n 1 49 MET n 1 50 LYS n 1 51 GLN n 1 52 PHE n 1 53 PRO n 1 54 GLU n 1 55 VAL n 1 56 ILE n 1 57 LYS n 1 58 TYR n 1 59 LEU n 1 60 SER n 1 61 ARG n 1 62 ASN n 1 63 VAL n 1 64 VAL n 1 65 HIS n 1 66 SER n 1 67 VAL n 1 68 ARG n 1 69 ARG n 1 70 GLU n 1 71 HIS n 1 72 PHE n 1 73 SER n 1 74 PHE n 1 75 SER n 1 76 PRO n 1 77 ARG n 1 78 MET n 1 79 PRO n 1 80 VAL n 1 81 GLY n 1 82 ASP n 1 83 PHE n 1 84 PHE n 1 85 GLU n 1 86 GLU n 1 87 ARG n 1 88 ASP n 1 89 THR n 1 90 PRO n 1 91 GLU n 1 92 GLY n 1 93 LEU n 1 94 GLN n 1 95 TRP n 1 96 VAL n 1 97 GLN n 1 98 LEU n 1 99 SER n 1 100 ALA n 1 101 GLU n 1 102 GLU n 1 103 ILE n 1 104 PRO n 1 105 SER n 1 106 ARG n 1 107 ILE n 1 108 GLN n 1 109 ALA n 1 110 ILE n 1 111 THR n 1 112 GLY n 1 113 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BAZ2A_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9UIF9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5AGQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UIF9 _struct_ref_seq.db_align_beg 543 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 650 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 516 _struct_ref_seq.pdbx_auth_seq_align_end 623 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5AGQ GLY A 1 ? UNP Q9UIF9 ? ? 'expression tag' 512 1 1 5AGQ ALA A 2 ? UNP Q9UIF9 ? ? 'expression tag' 513 2 1 5AGQ MET A 3 ? UNP Q9UIF9 ? ? 'expression tag' 514 3 1 5AGQ GLU A 4 ? UNP Q9UIF9 ? ? 'expression tag' 515 4 1 5AGQ SER A 113 ? UNP Q9UIF9 ? ? 'cloning artifact' 624 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 15N-HSQC 1 2 1 13C-HSQC 1 3 1 HNCACB 1 4 1 'HN(CO)CACB' 1 5 1 'CC(CO)NH- TOCSY' 1 6 1 HCCH-TOCSY 1 7 1 '15N- EDITED 3D NOESY' 1 8 1 '13C- EDITED 3D NOESY (ALIPHATICS)' 1 9 1 '13C-EDITED 3D NOESY (AROMATICS)' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293.0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1.0 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20MM SODIUM PHOSPHATE PH 7. 0, 50MM NACL, 1MM DTT, 90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 # _pdbx_nmr_refine.entry_id 5AGQ _pdbx_nmr_refine.method 'ARIA2, CNS' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 5AGQ _pdbx_nmr_details.text ;THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED TIP5-TAM DOMAIN. THE SOLUTION STRUCTURE WAS DEFINED BASED ON 2732 DISTANCE RESTRAINTS, DERIVED FROM CYANA 3.0, TORSION ANGLE RESTRAINTS AND TWO SETS OF RDCS FROM TWO DIFFERENT ALIGNMENT MEDIA. VALIDATION PERFORMED WITH ICING WEB, PROCHECK AND WHATCHECK. ; # _pdbx_nmr_ensemble.entry_id 5AGQ _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'BEST ENERGY' # _pdbx_nmr_representative.entry_id 5AGQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS ? 'BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE, JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON, WARREN' 1 'structure solution' Sparky ? ? 2 'structure solution' CYANA 3.0 ? 3 # _exptl.entry_id 5AGQ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 5AGQ _struct.title 'Solution structure of the TAM domain of human TIP5 BAZ2A involved in epigenetic regulation of rRNA genes' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AGQ _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, TAM DOMAIN, TIP5/BAZ2A, PROTEIN RNA INTERACTION, EPIGENETICS, RRNA GENE SILENCING' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 10 ? GLY A 21 ? THR A 521 GLY A 532 1 ? 12 HELX_P HELX_P2 2 GLN A 51 ? ASN A 62 ? GLN A 562 ASN A 573 1 ? 12 HELX_P HELX_P3 3 ARG A 68 ? PHE A 72 ? ARG A 579 PHE A 583 5 ? 5 HELX_P HELX_P4 4 GLU A 102 ? THR A 111 ? GLU A 613 THR A 622 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ARG A 48 ? MET A 49 ? ARG A 559 MET A 560 AA 2 TRP A 35 ? TYR A 42 ? TRP A 546 TYR A 553 AA 3 ARG A 23 ? LYS A 30 ? ARG A 534 LYS A 541 AA 4 ASP A 82 ? THR A 89 ? ASP A 593 THR A 600 AA 5 GLY A 92 ? LEU A 98 ? GLY A 603 LEU A 609 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N MET A 49 ? N MET A 560 O TYR A 41 ? O TYR A 552 AA 2 3 N TYR A 42 ? N TYR A 553 O ARG A 23 ? O ARG A 534 AA 3 4 N VAL A 26 ? N VAL A 537 O ASP A 82 ? O ASP A 593 AA 4 5 N THR A 89 ? N THR A 600 O GLY A 92 ? O GLY A 603 # _database_PDB_matrix.entry_id 5AGQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5AGQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 512 ? ? ? A . n A 1 2 ALA 2 513 ? ? ? A . n A 1 3 MET 3 514 ? ? ? A . n A 1 4 GLU 4 515 ? ? ? A . n A 1 5 ARG 5 516 516 ARG ARG A . n A 1 6 ARG 6 517 517 ARG ARG A . n A 1 7 ARG 7 518 518 ARG ARG A . n A 1 8 ILE 8 519 519 ILE ILE A . n A 1 9 ALA 9 520 520 ALA ALA A . n A 1 10 THR 10 521 521 THR THR A . n A 1 11 PRO 11 522 522 PRO PRO A . n A 1 12 GLU 12 523 523 GLU GLU A . n A 1 13 GLU 13 524 524 GLU GLU A . n A 1 14 VAL 14 525 525 VAL VAL A . n A 1 15 ARG 15 526 526 ARG ARG A . n A 1 16 LEU 16 527 527 LEU LEU A . n A 1 17 PRO 17 528 528 PRO PRO A . n A 1 18 LEU 18 529 529 LEU LEU A . n A 1 19 GLN 19 530 530 GLN GLN A . n A 1 20 HIS 20 531 531 HIS HIS A . n A 1 21 GLY 21 532 532 GLY GLY A . n A 1 22 TRP 22 533 533 TRP TRP A . n A 1 23 ARG 23 534 534 ARG ARG A . n A 1 24 ARG 24 535 535 ARG ARG A . n A 1 25 GLU 25 536 536 GLU GLU A . n A 1 26 VAL 26 537 537 VAL VAL A . n A 1 27 ARG 27 538 538 ARG ARG A . n A 1 28 ILE 28 539 539 ILE ILE A . n A 1 29 LYS 29 540 540 LYS LYS A . n A 1 30 LYS 30 541 541 LYS LYS A . n A 1 31 GLY 31 542 542 GLY GLY A . n A 1 32 SER 32 543 543 SER SER A . n A 1 33 HIS 33 544 544 HIS HIS A . n A 1 34 ARG 34 545 545 ARG ARG A . n A 1 35 TRP 35 546 546 TRP TRP A . n A 1 36 GLN 36 547 547 GLN GLN A . n A 1 37 GLY 37 548 548 GLY GLY A . n A 1 38 GLU 38 549 549 GLU GLU A . n A 1 39 THR 39 550 550 THR THR A . n A 1 40 TRP 40 551 551 TRP TRP A . n A 1 41 TYR 41 552 552 TYR TYR A . n A 1 42 TYR 42 553 553 TYR TYR A . n A 1 43 GLY 43 554 554 GLY GLY A . n A 1 44 PRO 44 555 555 PRO PRO A . n A 1 45 CYS 45 556 556 CYS CYS A . n A 1 46 GLY 46 557 557 GLY GLY A . n A 1 47 LYS 47 558 558 LYS LYS A . n A 1 48 ARG 48 559 559 ARG ARG A . n A 1 49 MET 49 560 560 MET MET A . n A 1 50 LYS 50 561 561 LYS LYS A . n A 1 51 GLN 51 562 562 GLN GLN A . n A 1 52 PHE 52 563 563 PHE PHE A . n A 1 53 PRO 53 564 564 PRO PRO A . n A 1 54 GLU 54 565 565 GLU GLU A . n A 1 55 VAL 55 566 566 VAL VAL A . n A 1 56 ILE 56 567 567 ILE ILE A . n A 1 57 LYS 57 568 568 LYS LYS A . n A 1 58 TYR 58 569 569 TYR TYR A . n A 1 59 LEU 59 570 570 LEU LEU A . n A 1 60 SER 60 571 571 SER SER A . n A 1 61 ARG 61 572 572 ARG ARG A . n A 1 62 ASN 62 573 573 ASN ASN A . n A 1 63 VAL 63 574 574 VAL VAL A . n A 1 64 VAL 64 575 575 VAL VAL A . n A 1 65 HIS 65 576 576 HIS HIS A . n A 1 66 SER 66 577 577 SER SER A . n A 1 67 VAL 67 578 578 VAL VAL A . n A 1 68 ARG 68 579 579 ARG ARG A . n A 1 69 ARG 69 580 580 ARG ARG A . n A 1 70 GLU 70 581 581 GLU GLU A . n A 1 71 HIS 71 582 582 HIS HIS A . n A 1 72 PHE 72 583 583 PHE PHE A . n A 1 73 SER 73 584 584 SER SER A . n A 1 74 PHE 74 585 585 PHE PHE A . n A 1 75 SER 75 586 586 SER SER A . n A 1 76 PRO 76 587 587 PRO PRO A . n A 1 77 ARG 77 588 588 ARG ARG A . n A 1 78 MET 78 589 589 MET MET A . n A 1 79 PRO 79 590 590 PRO PRO A . n A 1 80 VAL 80 591 591 VAL VAL A . n A 1 81 GLY 81 592 592 GLY GLY A . n A 1 82 ASP 82 593 593 ASP ASP A . n A 1 83 PHE 83 594 594 PHE PHE A . n A 1 84 PHE 84 595 595 PHE PHE A . n A 1 85 GLU 85 596 596 GLU GLU A . n A 1 86 GLU 86 597 597 GLU GLU A . n A 1 87 ARG 87 598 598 ARG ARG A . n A 1 88 ASP 88 599 599 ASP ASP A . n A 1 89 THR 89 600 600 THR THR A . n A 1 90 PRO 90 601 601 PRO PRO A . n A 1 91 GLU 91 602 602 GLU GLU A . n A 1 92 GLY 92 603 603 GLY GLY A . n A 1 93 LEU 93 604 604 LEU LEU A . n A 1 94 GLN 94 605 605 GLN GLN A . n A 1 95 TRP 95 606 606 TRP TRP A . n A 1 96 VAL 96 607 607 VAL VAL A . n A 1 97 GLN 97 608 608 GLN GLN A . n A 1 98 LEU 98 609 609 LEU LEU A . n A 1 99 SER 99 610 610 SER SER A . n A 1 100 ALA 100 611 611 ALA ALA A . n A 1 101 GLU 101 612 612 GLU GLU A . n A 1 102 GLU 102 613 613 GLU GLU A . n A 1 103 ILE 103 614 614 ILE ILE A . n A 1 104 PRO 104 615 615 PRO PRO A . n A 1 105 SER 105 616 616 SER SER A . n A 1 106 ARG 106 617 617 ARG ARG A . n A 1 107 ILE 107 618 618 ILE ILE A . n A 1 108 GLN 108 619 619 GLN GLN A . n A 1 109 ALA 109 620 620 ALA ALA A . n A 1 110 ILE 110 621 621 ILE ILE A . n A 1 111 THR 111 622 622 THR THR A . n A 1 112 GLY 112 623 623 GLY GLY A . n A 1 113 SER 113 624 624 SER SER A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-06 2 'Structure model' 1 1 2015-05-13 3 'Structure model' 1 2 2015-06-10 4 'Structure model' 2 0 2019-10-23 5 'Structure model' 2 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' Other 6 5 'Structure model' 'Database references' 7 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_pdbx_database_status.status_code_cs' 5 4 'Structure model' '_pdbx_database_status.status_code_mr' 6 4 'Structure model' '_pdbx_nmr_software.name' 7 4 'Structure model' '_pdbx_nmr_spectrometer.model' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' 10 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 5AGQ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;RESIDUE NUMBERING ACCORDING TO ISOFORM 1. N-TERMINAL RESIDUES GLY-ALA-MET-GLU ARE ADDED BY CLONING AND REMAIN AFTER EXPRESSION TAG REMOVAL WITH TOBACCO ETCH VIRUS (TEV) PROTEASE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 10 OE2 A GLU 596 ? ? HE A ARG 617 ? ? 1.59 2 11 HG1 A THR 600 ? ? O A GLY 603 ? ? 1.58 3 13 HG1 A THR 600 ? ? O A GLY 603 ? ? 1.59 4 15 OE1 A GLU 536 ? ? HH A TYR 553 ? ? 1.60 5 18 OE1 A GLU 596 ? ? HE A ARG 617 ? ? 1.57 6 18 HG1 A THR 600 ? ? O A GLY 603 ? ? 1.59 7 20 HG1 A THR 600 ? ? O A GLY 603 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 591 ? ? -101.77 -71.20 2 2 CYS A 556 ? ? -141.14 -22.77 3 2 VAL A 591 ? ? -106.98 -72.47 4 3 VAL A 591 ? ? -109.74 -72.60 5 4 CYS A 556 ? ? -143.86 -24.27 6 4 ASN A 573 ? ? -117.37 -168.72 7 4 VAL A 591 ? ? -104.81 -70.31 8 5 CYS A 556 ? ? -143.41 -24.89 9 6 HIS A 531 ? ? -94.66 -99.99 10 6 ASN A 573 ? ? -117.57 -162.93 11 6 VAL A 591 ? ? -107.60 -72.07 12 8 HIS A 576 ? ? -137.14 -34.30 13 8 VAL A 591 ? ? -102.82 -69.68 14 9 VAL A 591 ? ? -104.98 -68.08 15 10 VAL A 591 ? ? -104.96 -73.05 16 11 ARG A 518 ? ? 68.00 117.58 17 11 VAL A 591 ? ? -105.43 -70.74 18 12 VAL A 591 ? ? -106.39 -71.71 19 14 ASN A 573 ? ? -123.10 -167.08 20 15 VAL A 591 ? ? -105.29 -71.16 21 16 LYS A 561 ? ? -140.63 13.36 22 16 VAL A 591 ? ? -108.52 -69.10 23 17 VAL A 591 ? ? -101.17 -70.69 24 18 VAL A 591 ? ? -106.45 -70.59 25 19 VAL A 591 ? ? -104.97 -72.49 26 20 VAL A 591 ? ? -109.14 -69.29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 512 ? A GLY 1 2 1 Y 1 A ALA 513 ? A ALA 2 3 1 Y 1 A MET 514 ? A MET 3 4 1 Y 1 A GLU 515 ? A GLU 4 5 2 Y 1 A GLY 512 ? A GLY 1 6 2 Y 1 A ALA 513 ? A ALA 2 7 2 Y 1 A MET 514 ? A MET 3 8 2 Y 1 A GLU 515 ? A GLU 4 9 3 Y 1 A GLY 512 ? A GLY 1 10 3 Y 1 A ALA 513 ? A ALA 2 11 3 Y 1 A MET 514 ? A MET 3 12 3 Y 1 A GLU 515 ? A GLU 4 13 4 Y 1 A GLY 512 ? A GLY 1 14 4 Y 1 A ALA 513 ? A ALA 2 15 4 Y 1 A MET 514 ? A MET 3 16 4 Y 1 A GLU 515 ? A GLU 4 17 5 Y 1 A GLY 512 ? A GLY 1 18 5 Y 1 A ALA 513 ? A ALA 2 19 5 Y 1 A MET 514 ? A MET 3 20 5 Y 1 A GLU 515 ? A GLU 4 21 6 Y 1 A GLY 512 ? A GLY 1 22 6 Y 1 A ALA 513 ? A ALA 2 23 6 Y 1 A MET 514 ? A MET 3 24 6 Y 1 A GLU 515 ? A GLU 4 25 7 Y 1 A GLY 512 ? A GLY 1 26 7 Y 1 A ALA 513 ? A ALA 2 27 7 Y 1 A MET 514 ? A MET 3 28 7 Y 1 A GLU 515 ? A GLU 4 29 8 Y 1 A GLY 512 ? A GLY 1 30 8 Y 1 A ALA 513 ? A ALA 2 31 8 Y 1 A MET 514 ? A MET 3 32 8 Y 1 A GLU 515 ? A GLU 4 33 9 Y 1 A GLY 512 ? A GLY 1 34 9 Y 1 A ALA 513 ? A ALA 2 35 9 Y 1 A MET 514 ? A MET 3 36 9 Y 1 A GLU 515 ? A GLU 4 37 10 Y 1 A GLY 512 ? A GLY 1 38 10 Y 1 A ALA 513 ? A ALA 2 39 10 Y 1 A MET 514 ? A MET 3 40 10 Y 1 A GLU 515 ? A GLU 4 41 11 Y 1 A GLY 512 ? A GLY 1 42 11 Y 1 A ALA 513 ? A ALA 2 43 11 Y 1 A MET 514 ? A MET 3 44 11 Y 1 A GLU 515 ? A GLU 4 45 12 Y 1 A GLY 512 ? A GLY 1 46 12 Y 1 A ALA 513 ? A ALA 2 47 12 Y 1 A MET 514 ? A MET 3 48 12 Y 1 A GLU 515 ? A GLU 4 49 13 Y 1 A GLY 512 ? A GLY 1 50 13 Y 1 A ALA 513 ? A ALA 2 51 13 Y 1 A MET 514 ? A MET 3 52 13 Y 1 A GLU 515 ? A GLU 4 53 14 Y 1 A GLY 512 ? A GLY 1 54 14 Y 1 A ALA 513 ? A ALA 2 55 14 Y 1 A MET 514 ? A MET 3 56 14 Y 1 A GLU 515 ? A GLU 4 57 15 Y 1 A GLY 512 ? A GLY 1 58 15 Y 1 A ALA 513 ? A ALA 2 59 15 Y 1 A MET 514 ? A MET 3 60 15 Y 1 A GLU 515 ? A GLU 4 61 16 Y 1 A GLY 512 ? A GLY 1 62 16 Y 1 A ALA 513 ? A ALA 2 63 16 Y 1 A MET 514 ? A MET 3 64 16 Y 1 A GLU 515 ? A GLU 4 65 17 Y 1 A GLY 512 ? A GLY 1 66 17 Y 1 A ALA 513 ? A ALA 2 67 17 Y 1 A MET 514 ? A MET 3 68 17 Y 1 A GLU 515 ? A GLU 4 69 18 Y 1 A GLY 512 ? A GLY 1 70 18 Y 1 A ALA 513 ? A ALA 2 71 18 Y 1 A MET 514 ? A MET 3 72 18 Y 1 A GLU 515 ? A GLU 4 73 19 Y 1 A GLY 512 ? A GLY 1 74 19 Y 1 A ALA 513 ? A ALA 2 75 19 Y 1 A MET 514 ? A MET 3 76 19 Y 1 A GLU 515 ? A GLU 4 77 20 Y 1 A GLY 512 ? A GLY 1 78 20 Y 1 A ALA 513 ? A ALA 2 79 20 Y 1 A MET 514 ? A MET 3 80 20 Y 1 A GLU 515 ? A GLU 4 #