data_5AHF # _entry.id 5AHF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5AHF PDBE EBI-62930 WWPDB D_1290062930 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5AHE unspecified 'CRYSTAL STRUCTURE OF SALMONELLA ENTERICA HISA APO STRUCTURE' PDB 5AHI unspecified 'CRYSTAL STRUCTURE OF SALMONALLA ENTERICA HISA MUTANT D7N WITH PROFAR' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AHF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-02-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Soderholm, A.' 1 'Guo, X.' 2 'Newton, M.S.' 3 'Evans, G.B.' 4 'Nasvall, J.' 5 'Patrick, W.M.' 6 'Selmer, M.' 7 # _citation.id primary _citation.title 'Two-Step Ligand Binding in a Beta/Alpha8 Barrel Enzyme -Substrate-Bound Structures Shed New Light on the Catalytic Cycle of Hisa' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 290 _citation.page_first 24657 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26294764 _citation.pdbx_database_id_DOI 10.1074/JBC.M115.678086 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Soderholm, A.' 1 primary 'Guo, X.' 2 primary 'Newton, M.S.' 3 primary 'Evans, G.B.' 4 primary 'Nasvall, J.' 5 primary 'Patrick, W.M.' 6 primary 'Selmer, M.' 7 # _cell.entry_id 5AHF _cell.length_a 86.698 _cell.length_b 86.698 _cell.length_c 121.861 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AHF _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ? 27130.943 1 5.3.1.16 YES ? ? 2 non-polymer syn ;[(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[(E)-[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]amino]methylideneamino]imidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate ; 577.331 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 52 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HISA, PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMER' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MIIPALNLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGG GVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETY LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRGTGVRGVIVGRALLEGKFTVKEAIQ CWQNVKGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MIIPALNLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGG GVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETY LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRGTGVRGVIVGRALLEGKFTVKEAIQ CWQNVKGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 ILE n 1 4 PRO n 1 5 ALA n 1 6 LEU n 1 7 ASN n 1 8 LEU n 1 9 ILE n 1 10 ASP n 1 11 GLY n 1 12 THR n 1 13 VAL n 1 14 VAL n 1 15 ARG n 1 16 LEU n 1 17 HIS n 1 18 GLN n 1 19 GLY n 1 20 ASP n 1 21 TYR n 1 22 ALA n 1 23 ARG n 1 24 GLN n 1 25 ARG n 1 26 ASP n 1 27 TYR n 1 28 GLY n 1 29 ASN n 1 30 ASP n 1 31 PRO n 1 32 LEU n 1 33 PRO n 1 34 ARG n 1 35 LEU n 1 36 GLN n 1 37 ASP n 1 38 TYR n 1 39 ALA n 1 40 ALA n 1 41 GLN n 1 42 GLY n 1 43 ALA n 1 44 GLY n 1 45 VAL n 1 46 LEU n 1 47 HIS n 1 48 LEU n 1 49 VAL n 1 50 ASP n 1 51 LEU n 1 52 THR n 1 53 GLY n 1 54 ALA n 1 55 LYS n 1 56 ASP n 1 57 PRO n 1 58 ALA n 1 59 LYS n 1 60 ARG n 1 61 GLN n 1 62 ILE n 1 63 PRO n 1 64 LEU n 1 65 ILE n 1 66 LYS n 1 67 THR n 1 68 LEU n 1 69 VAL n 1 70 ALA n 1 71 GLY n 1 72 VAL n 1 73 ASN n 1 74 VAL n 1 75 PRO n 1 76 VAL n 1 77 GLN n 1 78 VAL n 1 79 GLY n 1 80 GLY n 1 81 GLY n 1 82 VAL n 1 83 ARG n 1 84 THR n 1 85 GLU n 1 86 GLU n 1 87 ASP n 1 88 VAL n 1 89 ALA n 1 90 ALA n 1 91 LEU n 1 92 LEU n 1 93 LYS n 1 94 ALA n 1 95 GLY n 1 96 VAL n 1 97 ALA n 1 98 ARG n 1 99 VAL n 1 100 VAL n 1 101 ILE n 1 102 GLY n 1 103 SER n 1 104 THR n 1 105 ALA n 1 106 VAL n 1 107 LYS n 1 108 SER n 1 109 PRO n 1 110 ASP n 1 111 VAL n 1 112 VAL n 1 113 LYS n 1 114 GLY n 1 115 TRP n 1 116 PHE n 1 117 GLU n 1 118 ARG n 1 119 PHE n 1 120 GLY n 1 121 ALA n 1 122 GLN n 1 123 ALA n 1 124 LEU n 1 125 VAL n 1 126 LEU n 1 127 ALA n 1 128 LEU n 1 129 ASP n 1 130 VAL n 1 131 ARG n 1 132 ILE n 1 133 ASP n 1 134 GLU n 1 135 HIS n 1 136 GLY n 1 137 THR n 1 138 LYS n 1 139 GLN n 1 140 VAL n 1 141 ALA n 1 142 VAL n 1 143 SER n 1 144 GLY n 1 145 TRP n 1 146 GLN n 1 147 GLU n 1 148 ASN n 1 149 SER n 1 150 GLY n 1 151 VAL n 1 152 SER n 1 153 LEU n 1 154 GLU n 1 155 GLN n 1 156 LEU n 1 157 VAL n 1 158 GLU n 1 159 THR n 1 160 TYR n 1 161 LEU n 1 162 PRO n 1 163 VAL n 1 164 GLY n 1 165 LEU n 1 166 LYS n 1 167 HIS n 1 168 VAL n 1 169 LEU n 1 170 CYS n 1 171 THR n 1 172 ASP n 1 173 ILE n 1 174 SER n 1 175 ARG n 1 176 ASP n 1 177 GLY n 1 178 THR n 1 179 LEU n 1 180 ALA n 1 181 GLY n 1 182 SER n 1 183 ASN n 1 184 VAL n 1 185 SER n 1 186 LEU n 1 187 TYR n 1 188 GLU n 1 189 GLU n 1 190 VAL n 1 191 CYS n 1 192 ALA n 1 193 ARG n 1 194 TYR n 1 195 PRO n 1 196 GLN n 1 197 ILE n 1 198 ALA n 1 199 PHE n 1 200 GLN n 1 201 SER n 1 202 SER n 1 203 GLY n 1 204 GLY n 1 205 ILE n 1 206 GLY n 1 207 ASP n 1 208 ILE n 1 209 ASP n 1 210 ASP n 1 211 ILE n 1 212 ALA n 1 213 ALA n 1 214 LEU n 1 215 ARG n 1 216 GLY n 1 217 THR n 1 218 GLY n 1 219 VAL n 1 220 ARG n 1 221 GLY n 1 222 VAL n 1 223 ILE n 1 224 VAL n 1 225 GLY n 1 226 ARG n 1 227 ALA n 1 228 LEU n 1 229 LEU n 1 230 GLU n 1 231 GLY n 1 232 LYS n 1 233 PHE n 1 234 THR n 1 235 VAL n 1 236 LYS n 1 237 GLU n 1 238 ALA n 1 239 ILE n 1 240 GLN n 1 241 CYS n 1 242 TRP n 1 243 GLN n 1 244 ASN n 1 245 VAL n 1 246 LYS n 1 247 GLY n 1 248 HIS n 1 249 HIS n 1 250 HIS n 1 251 HIS n 1 252 HIS n 1 253 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SALMONELLA ENTERICA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 28901 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PEXP5-CT _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HIS4_SALTY _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P10372 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5AHF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 245 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10372 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 245 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 245 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5AHF LYS A 246 ? UNP P10372 ? ? 'expression tag' 246 1 1 5AHF GLY A 247 ? UNP P10372 ? ? 'expression tag' 247 2 1 5AHF HIS A 248 ? UNP P10372 ? ? 'expression tag' 248 3 1 5AHF HIS A 249 ? UNP P10372 ? ? 'expression tag' 249 4 1 5AHF HIS A 250 ? UNP P10372 ? ? 'expression tag' 250 5 1 5AHF HIS A 251 ? UNP P10372 ? ? 'expression tag' 251 6 1 5AHF HIS A 252 ? UNP P10372 ? ? 'expression tag' 252 7 1 5AHF HIS A 253 ? UNP P10372 ? ? 'expression tag' 253 8 1 5AHF ASN A 7 ? UNP P10372 ASP 7 'engineered mutation' 7 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 GUO non-polymer . ;[(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[(E)-[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]amino]methylideneamino]imidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate ; ? 'C15 H25 N5 O15 P2' 577.331 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5AHF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 47.01 _exptl_crystal.description 'AS SEARCH MODEL THE WILD TYPE S. ENTERICA HISA WAS USED.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M AMMONIUM ACETATE, 0.1 M NA ACETATE AND 20% PEG4000 PH5.15, pH 7' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2014-09-12 _diffrn_detector.details 'PT COATED SI MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SILICON 111 CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.872900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.872900 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AHF _reflns.observed_criterion_sigma_I 1.8 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 47.31 _reflns.d_resolution_high 2.20 _reflns.number_obs 25987 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.09 _reflns.B_iso_Wilson_estimate 38.34 _reflns.pdbx_redundancy 10 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.25 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.80 _reflns_shell.pdbx_redundancy 9.66 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AHF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 25987 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.312 _refine.ls_d_res_high 2.201 _refine.ls_percent_reflns_obs 99.97 _refine.ls_R_factor_obs 0.1722 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1697 _refine.ls_R_factor_R_free 0.2180 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1310 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 44.71 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'RESIDUES 17-24, 175-18, 245-253 ARE DISORDERED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.pdbx_overall_phase_error 22.67 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1718 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1819 _refine_hist.d_res_high 2.201 _refine_hist.d_res_low 47.312 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1848 'X-RAY DIFFRACTION' ? f_angle_d 1.141 ? ? 2521 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.101 ? ? 724 'X-RAY DIFFRACTION' ? f_chiral_restr 0.041 ? ? 303 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 323 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.2007 2.2888 2705 0.2630 100.00 0.3228 . . 147 . . 'X-RAY DIFFRACTION' . 2.2888 2.3929 2774 0.2243 100.00 0.2867 . . 142 . . 'X-RAY DIFFRACTION' . 2.3929 2.5191 2730 0.2091 100.00 0.2237 . . 146 . . 'X-RAY DIFFRACTION' . 2.5191 2.6769 2751 0.2072 100.00 0.2667 . . 148 . . 'X-RAY DIFFRACTION' . 2.6769 2.8836 2741 0.1998 100.00 0.2935 . . 147 . . 'X-RAY DIFFRACTION' . 2.8836 3.1737 2743 0.1852 100.00 0.2120 . . 143 . . 'X-RAY DIFFRACTION' . 3.1737 3.6328 2745 0.1659 100.00 0.2425 . . 144 . . 'X-RAY DIFFRACTION' . 3.6328 4.5764 2747 0.1321 100.00 0.1792 . . 140 . . 'X-RAY DIFFRACTION' . 4.5764 47.3228 2741 0.1465 100.00 0.1762 . . 153 . . # _struct.entry_id 5AHF _struct.title 'Crystal structure of Salmonella enterica HisA D7N with ProFAR' _struct.pdbx_descriptor PROTEIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AHF _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'ISOMERASE, HISA, HISTIDINE BIOSYNTHESIS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 30 ? GLN A 41 ? ASP A 30 GLN A 41 1 ? 12 HELX_P HELX_P2 2 LEU A 51 ? ASP A 56 ? LEU A 51 ASP A 56 1 ? 6 HELX_P HELX_P3 3 PRO A 57 ? ARG A 60 ? PRO A 57 ARG A 60 5 ? 4 HELX_P HELX_P4 4 GLN A 61 ? GLY A 71 ? GLN A 61 GLY A 71 1 ? 11 HELX_P HELX_P5 5 THR A 84 ? ALA A 94 ? THR A 84 ALA A 94 1 ? 11 HELX_P HELX_P6 6 GLY A 102 ? SER A 108 ? GLY A 102 SER A 108 1 ? 7 HELX_P HELX_P7 7 SER A 108 ? GLY A 120 ? SER A 108 GLY A 120 1 ? 13 HELX_P HELX_P8 8 SER A 152 ? LEU A 161 ? SER A 152 LEU A 161 1 ? 10 HELX_P HELX_P9 9 PRO A 162 ? GLY A 164 ? PRO A 162 GLY A 164 5 ? 3 HELX_P HELX_P10 10 ASN A 183 ? TYR A 194 ? ASN A 183 TYR A 194 1 ? 12 HELX_P HELX_P11 11 ASP A 207 ? ALA A 213 ? ASP A 207 ALA A 213 1 ? 7 HELX_P HELX_P12 12 GLY A 225 ? GLU A 230 ? GLY A 225 GLU A 230 1 ? 6 HELX_P HELX_P13 13 THR A 234 ? ASN A 244 ? THR A 234 ASN A 244 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 7 ? AB ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AA 6 7 ? parallel AB 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ARG A 25 ? ASP A 26 ? ARG A 25 ASP A 26 AA 2 THR A 12 ? ARG A 15 ? THR A 12 ARG A 15 AA 3 ILE A 2 ? ILE A 9 ? ILE A 2 ILE A 9 AA 4 GLY A 221 ? VAL A 224 ? GLY A 221 VAL A 224 AA 5 ALA A 198 ? SER A 202 ? ALA A 198 SER A 202 AA 6 HIS A 167 ? ASP A 172 ? HIS A 167 ASP A 172 AA 7 LEU A 124 ? ILE A 132 ? LEU A 124 ILE A 132 AB 1 ARG A 25 ? ASP A 26 ? ARG A 25 ASP A 26 AB 2 LEU A 124 ? ILE A 132 ? LEU A 124 ILE A 132 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ARG A 25 ? N ARG A 25 O ARG A 15 ? O ARG A 15 AA 2 3 N VAL A 14 ? N VAL A 14 O ASN A 7 ? O ASN A 7 AA 3 4 N ILE A 3 ? N ILE A 3 O VAL A 222 ? O VAL A 222 AA 4 5 N ILE A 223 ? N ILE A 223 O SER A 201 ? O SER A 201 AA 5 6 N GLN A 200 ? N GLN A 200 O VAL A 168 ? O VAL A 168 AA 6 7 N HIS A 167 ? N HIS A 167 O LEU A 124 ? O LEU A 124 AB 1 2 N ILE A 101 ? N ILE A 101 O VAL A 125 ? O VAL A 125 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 21 'BINDING SITE FOR RESIDUE GUO A 1245' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 1246' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 1247' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 ASN A 7 ? ASN A 7 . ? 1_555 ? 2 AC1 21 ARG A 15 ? ARG A 15 . ? 1_555 ? 3 AC1 21 VAL A 49 ? VAL A 49 . ? 1_555 ? 4 AC1 21 LEU A 51 ? LEU A 51 . ? 1_555 ? 5 AC1 21 GLY A 80 ? GLY A 80 . ? 1_555 ? 6 AC1 21 GLY A 81 ? GLY A 81 . ? 1_555 ? 7 AC1 21 GLY A 102 ? GLY A 102 . ? 1_555 ? 8 AC1 21 SER A 103 ? SER A 103 . ? 1_555 ? 9 AC1 21 ALA A 127 ? ALA A 127 . ? 1_555 ? 10 AC1 21 ASP A 129 ? ASP A 129 . ? 1_555 ? 11 AC1 21 SER A 202 ? SER A 202 . ? 1_555 ? 12 AC1 21 GLY A 225 ? GLY A 225 . ? 1_555 ? 13 AC1 21 ARG A 226 ? ARG A 226 . ? 1_555 ? 14 AC1 21 HOH E . ? HOH A 2013 . ? 1_555 ? 15 AC1 21 HOH E . ? HOH A 2018 . ? 1_555 ? 16 AC1 21 HOH E . ? HOH A 2019 . ? 1_555 ? 17 AC1 21 HOH E . ? HOH A 2035 . ? 1_555 ? 18 AC1 21 HOH E . ? HOH A 2037 . ? 1_555 ? 19 AC1 21 HOH E . ? HOH A 2047 . ? 1_555 ? 20 AC1 21 HOH E . ? HOH A 2048 . ? 1_555 ? 21 AC1 21 HOH E . ? HOH A 2052 . ? 1_555 ? 22 AC2 5 ASP A 110 ? ASP A 110 . ? 1_555 ? 23 AC2 5 LYS A 113 ? LYS A 113 . ? 1_555 ? 24 AC2 5 PHE A 119 ? PHE A 119 . ? 6_555 ? 25 AC2 5 GLN A 122 ? GLN A 122 . ? 6_555 ? 26 AC2 5 THR A 159 ? THR A 159 . ? 1_555 ? 27 AC3 6 ASP A 37 ? ASP A 37 . ? 1_555 ? 28 AC3 6 ALA A 40 ? ALA A 40 . ? 1_555 ? 29 AC3 6 LYS A 232 ? LYS A 232 . ? 10_664 ? 30 AC3 6 GLU A 237 ? GLU A 237 . ? 10_664 ? 31 AC3 6 HOH E . ? HOH A 2049 . ? 10_664 ? 32 AC3 6 HOH E . ? HOH A 2051 . ? 10_664 ? # _database_PDB_matrix.entry_id 5AHF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5AHF _atom_sites.fract_transf_matrix[1][1] 0.011534 _atom_sites.fract_transf_matrix[1][2] 0.006659 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013319 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008206 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 HIS 17 17 ? ? ? A . n A 1 18 GLN 18 18 ? ? ? A . n A 1 19 GLY 19 19 ? ? ? A . n A 1 20 ASP 20 20 ? ? ? A . n A 1 21 TYR 21 21 ? ? ? A . n A 1 22 ALA 22 22 ? ? ? A . n A 1 23 ARG 23 23 ? ? ? A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 TRP 115 115 115 TRP TRP A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 GLN 122 122 122 GLN GLN A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 TRP 145 145 145 TRP TRP A . n A 1 146 GLN 146 146 146 GLN GLN A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 THR 159 159 159 THR THR A . n A 1 160 TYR 160 160 160 TYR TYR A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 PRO 162 162 162 PRO PRO A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 HIS 167 167 167 HIS HIS A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 CYS 170 170 170 CYS CYS A . n A 1 171 THR 171 171 171 THR THR A . n A 1 172 ASP 172 172 172 ASP ASP A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 SER 174 174 174 SER SER A . n A 1 175 ARG 175 175 ? ? ? A . n A 1 176 ASP 176 176 ? ? ? A . n A 1 177 GLY 177 177 ? ? ? A . n A 1 178 THR 178 178 ? ? ? A . n A 1 179 LEU 179 179 ? ? ? A . n A 1 180 ALA 180 180 ? ? ? A . n A 1 181 GLY 181 181 ? ? ? A . n A 1 182 SER 182 182 ? ? ? A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 SER 185 185 185 SER SER A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 TYR 187 187 187 TYR TYR A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 CYS 191 191 191 CYS CYS A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 TYR 194 194 194 TYR TYR A . n A 1 195 PRO 195 195 195 PRO PRO A . n A 1 196 GLN 196 196 196 GLN GLN A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 PHE 199 199 199 PHE PHE A . n A 1 200 GLN 200 200 200 GLN GLN A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 SER 202 202 202 SER SER A . n A 1 203 GLY 203 203 203 GLY GLY A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 ILE 205 205 205 ILE ILE A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 ASP 207 207 207 ASP ASP A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 ASP 209 209 209 ASP ASP A . n A 1 210 ASP 210 210 210 ASP ASP A . n A 1 211 ILE 211 211 211 ILE ILE A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ALA 213 213 213 ALA ALA A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 ARG 215 215 215 ARG ARG A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 THR 217 217 217 THR THR A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 VAL 219 219 219 VAL VAL A . n A 1 220 ARG 220 220 220 ARG ARG A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 ILE 223 223 223 ILE ILE A . n A 1 224 VAL 224 224 224 VAL VAL A . n A 1 225 GLY 225 225 225 GLY GLY A . n A 1 226 ARG 226 226 226 ARG ARG A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 GLU 230 230 230 GLU GLU A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 THR 234 234 234 THR THR A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 LYS 236 236 236 LYS LYS A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 ALA 238 238 238 ALA ALA A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 GLN 240 240 240 GLN GLN A . n A 1 241 CYS 241 241 241 CYS CYS A . n A 1 242 TRP 242 242 242 TRP TRP A . n A 1 243 GLN 243 243 243 GLN GLN A . n A 1 244 ASN 244 244 244 ASN ASN A . n A 1 245 VAL 245 245 ? ? ? A . n A 1 246 LYS 246 246 ? ? ? A . n A 1 247 GLY 247 247 ? ? ? A . n A 1 248 HIS 248 248 ? ? ? A . n A 1 249 HIS 249 249 ? ? ? A . n A 1 250 HIS 250 250 ? ? ? A . n A 1 251 HIS 251 251 ? ? ? A . n A 1 252 HIS 252 252 ? ? ? A . n A 1 253 HIS 253 253 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GUO 1 1245 1245 GUO GUO A . C 3 GOL 1 1246 1246 GOL GOL A . D 3 GOL 1 1247 1247 GOL GOL A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2043 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-02 2 'Structure model' 1 1 2015-10-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 6.4568 32.3298 -8.8511 0.2839 0.2580 0.3130 0.0220 -0.0022 0.0459 0.0577 0.0481 0.0825 -0.0084 -0.0510 0.0499 -0.1080 0.0560 0.1771 -0.0775 0.0697 0.0927 -0.1452 -0.1113 -0.0000 'X-RAY DIFFRACTION' 2 ? refined 4.5909 41.6990 -6.5942 0.7934 0.6594 1.3296 0.0164 -0.0912 -0.0846 0.0145 0.0096 0.0172 0.0013 -0.0153 0.0065 -0.2018 -0.2444 0.1495 0.1079 -0.0974 0.0089 0.0174 0.1903 0.0000 'X-RAY DIFFRACTION' 3 ? refined 5.8372 28.5836 -13.3042 0.3158 0.3269 0.3456 -0.0068 -0.0007 0.0310 0.0435 0.6663 0.3000 0.1624 -0.0621 -0.1262 0.0094 0.1032 0.3425 -0.1573 0.0388 0.1196 -0.1723 -0.0322 -0.0000 'X-RAY DIFFRACTION' 4 ? refined 0.1079 16.1493 -4.2420 0.2710 0.2571 0.2561 -0.0153 0.0238 -0.0058 0.3922 0.1948 0.3809 -0.2249 0.1057 -0.1797 -0.0706 0.0656 -0.0302 0.0082 0.0334 0.1010 0.0559 -0.0898 -0.0000 'X-RAY DIFFRACTION' 5 ? refined 0.7973 27.2215 15.6195 0.4736 0.3795 0.3829 0.0211 0.0314 -0.0547 0.0603 0.0786 0.0146 -0.0085 0.0272 0.0037 0.1277 -0.0124 0.2901 0.1564 -0.0382 0.2587 0.0989 -0.0682 -0.0000 'X-RAY DIFFRACTION' 6 ? refined -0.5990 18.8915 11.2346 0.3728 0.3089 0.3421 0.0183 0.0109 0.0031 0.1904 0.0817 0.0641 0.0436 -0.0461 0.0556 -0.1596 -0.1089 0.0072 -0.1401 0.1353 0.5340 -0.1019 0.0432 0.0000 'X-RAY DIFFRACTION' 7 ? refined 7.7775 22.8351 6.6685 0.3691 0.3167 0.3657 -0.0192 0.0040 -0.0250 0.1677 0.0496 0.0569 -0.0468 0.1042 -0.0353 -0.0816 -0.1313 0.2954 0.2154 0.2643 -0.5178 -0.1732 0.2952 0.0000 'X-RAY DIFFRACTION' 8 ? refined 16.4076 24.4408 9.1293 0.3847 0.3547 0.3259 -0.0200 -0.0068 0.0191 0.0204 0.0951 0.0529 0.0499 -0.0351 -0.0817 0.0410 -0.2680 0.0153 0.1852 -0.1230 -0.1998 -0.1135 0.2303 -0.0000 'X-RAY DIFFRACTION' 9 ? refined 20.1013 32.1946 -2.1367 0.3604 0.3187 0.3650 -0.0471 0.0090 0.0341 0.1532 0.0907 0.1189 0.1094 0.0659 -0.0087 0.0844 -0.0833 -0.0172 0.2040 -0.1498 -0.0601 -0.2283 0.2147 0.0000 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 1:14)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 15:28)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 29:72)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 73:128)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 129:144)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 145:163)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 164:183)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 184:219)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(CHAIN A AND RESID 220:244)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 56 ? ? -166.79 96.51 2 1 LEU A 165 ? ? -35.57 126.59 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 17 ? A HIS 17 2 1 Y 1 A GLN 18 ? A GLN 18 3 1 Y 1 A GLY 19 ? A GLY 19 4 1 Y 1 A ASP 20 ? A ASP 20 5 1 Y 1 A TYR 21 ? A TYR 21 6 1 Y 1 A ALA 22 ? A ALA 22 7 1 Y 1 A ARG 23 ? A ARG 23 8 1 Y 1 A ARG 175 ? A ARG 175 9 1 Y 1 A ASP 176 ? A ASP 176 10 1 Y 1 A GLY 177 ? A GLY 177 11 1 Y 1 A THR 178 ? A THR 178 12 1 Y 1 A LEU 179 ? A LEU 179 13 1 Y 1 A ALA 180 ? A ALA 180 14 1 Y 1 A GLY 181 ? A GLY 181 15 1 Y 1 A SER 182 ? A SER 182 16 1 Y 1 A VAL 245 ? A VAL 245 17 1 Y 1 A LYS 246 ? A LYS 246 18 1 Y 1 A GLY 247 ? A GLY 247 19 1 Y 1 A HIS 248 ? A HIS 248 20 1 Y 1 A HIS 249 ? A HIS 249 21 1 Y 1 A HIS 250 ? A HIS 250 22 1 Y 1 A HIS 251 ? A HIS 251 23 1 Y 1 A HIS 252 ? A HIS 252 24 1 Y 1 A HIS 253 ? A HIS 253 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[(E)-[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]amino]methylideneamino]imidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate ; GUO 3 GLYCEROL GOL 4 water HOH #