HEADER HYDROLASE 06-FEB-15 5AHO TITLE CRYSTAL STRUCTURE OF HUMAN 5' EXONUCLEASE APOLLO COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5' EXONUCLEASE APOLLO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA CROSS-LINK REPAIR 1B PROTEIN, SNM1 HOMOLOG B, SNMIB, COMPND 5 HSNM1B; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFB LIC BSE KEYWDS HYDROLASE, DNA REPAIR METALLO-BETA-LACTAMASE, DCLRE1B EXPDTA X-RAY DIFFRACTION AUTHOR C.K.ALLERSTON,M.VOLLMAR,T.KROJER,A.C.W.PIKE,J.A.NEWMAN,E.CARPENTER, AUTHOR 2 A.QUIGLEY,P.MAHAJAN,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS, AUTHOR 3 O.GILEADI REVDAT 3 24-JAN-18 5AHO 1 AUTHOR REVDAT 2 24-FEB-16 5AHO 1 JRNL REVDAT 1 18-FEB-15 5AHO 0 SPRSDE 18-FEB-15 5AHO 3ZDK JRNL AUTH C.K.ALLERSTON,S.Y.LEE,J.A.NEWMAN,C.J.SCHOFIELD,P.J.MCHUGH, JRNL AUTH 2 O.GILEADI JRNL TITL THE STRUCTURES OF THE SNM1A AND SNM1B/APOLLO NUCLEASE JRNL TITL 2 DOMAINS REVEAL A POTENTIAL BASIS FOR THEIR DISTINCT DNA JRNL TITL 3 PROCESSING ACTIVITIES. JRNL REF NUCLEIC ACIDS RES. V. 43 11047 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 26582912 JRNL DOI 10.1093/NAR/GKV1256 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.6045 - 4.6528 1.00 2851 128 0.1726 0.1805 REMARK 3 2 4.6528 - 3.6934 1.00 2660 138 0.1594 0.1885 REMARK 3 3 3.6934 - 3.2266 1.00 2621 142 0.1934 0.2006 REMARK 3 4 3.2266 - 2.9316 1.00 2565 169 0.2121 0.2465 REMARK 3 5 2.9316 - 2.7215 1.00 2585 130 0.2378 0.2616 REMARK 3 6 2.7215 - 2.5611 1.00 2571 118 0.2387 0.2659 REMARK 3 7 2.5611 - 2.4328 1.00 2562 139 0.2528 0.2731 REMARK 3 8 2.4328 - 2.3269 1.00 2566 134 0.2543 0.2556 REMARK 3 9 2.3269 - 2.2373 1.00 2545 123 0.2756 0.3037 REMARK 3 10 2.2373 - 2.1601 1.00 2551 141 0.3104 0.3246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2624 REMARK 3 ANGLE : 0.592 3568 REMARK 3 CHIRALITY : 0.024 406 REMARK 3 PLANARITY : 0.003 455 REMARK 3 DIHEDRAL : 10.392 944 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290062996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26072 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 71.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : 0.22000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M K/NA(TART) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.54600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.54600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.54600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.54600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 71.54600 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 71.54600 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 71.54600 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 71.54600 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 71.54600 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 71.54600 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 71.54600 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 71.54600 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 71.54600 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 107.31900 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.77300 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 107.31900 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 107.31900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 35.77300 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 107.31900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.77300 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 35.77300 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 35.77300 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 35.77300 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 107.31900 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 35.77300 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 107.31900 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 107.31900 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 35.77300 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 107.31900 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 107.31900 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 35.77300 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 35.77300 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 35.77300 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 107.31900 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 35.77300 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 107.31900 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 35.77300 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 107.31900 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 107.31900 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 107.31900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 314 REMARK 465 SER A 315 REMARK 465 VAL A 316 REMARK 465 PRO A 317 REMARK 465 LEU A 318 REMARK 465 ILE A 319 REMARK 465 PRO A 320 REMARK 465 ASP A 321 REMARK 465 SER A 322 REMARK 465 VAL A 323 REMARK 465 GLN A 324 REMARK 465 GLN A 325 REMARK 465 TYR A 326 REMARK 465 MET A 327 REMARK 465 SER A 328 REMARK 465 SER A 329 REMARK 465 PHE A 330 REMARK 465 SER A 331 REMARK 465 ARG A 332 REMARK 465 LYS A 333 REMARK 465 PRO A 334 REMARK 465 SER A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 225 CD CE NZ REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 313 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 42.15 -105.68 REMARK 500 PRO A 10 37.20 -90.94 REMARK 500 ALA A 24 41.39 -103.73 REMARK 500 ASN A 146 31.11 -96.87 REMARK 500 PRO A 272 51.81 -64.91 REMARK 500 LYS A 290 70.02 49.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TLA A1319 O11 REMARK 620 2 TLA A1319 O2 69.0 REMARK 620 3 HIS A 33 ND1 94.5 89.6 REMARK 620 4 ASP A 120 OD2 86.7 76.0 164.1 REMARK 620 5 HIS A 99 NE2 78.8 147.7 95.8 100.0 REMARK 620 6 HIS A 31 NE2 175.1 109.1 89.9 88.5 102.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1320 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TLA A1319 O2 REMARK 620 2 TLA A1319 O41 79.0 REMARK 620 3 ASP A 35 OD2 76.9 85.2 REMARK 620 4 HIS A 36 NE2 97.1 167.2 82.0 REMARK 620 5 ASP A 120 OD2 84.0 107.7 154.6 83.8 REMARK 620 6 HOH A2006 O 164.1 85.1 100.5 98.1 102.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1323 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AHR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN DNA CROSS-LINK REPAIR 1A, CRYSTAL FORM B REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST RESIDUE IS PART OF UNCLEAVED TAG. DBREF 5AHO A 1 335 UNP Q9H816 DCR1B_HUMAN 1 335 SEQADV 5AHO SER A 0 UNP Q9H816 EXPRESSION TAG SEQADV 5AHO PHE A 330 UNP Q9H816 SER 330 CLONING ARTIFACT SEQRES 1 A 336 SER MET ASN GLY VAL LEU ILE PRO HIS THR PRO ILE ALA SEQRES 2 A 336 VAL ASP PHE TRP SER LEU ARG ARG ALA GLY THR ALA ARG SEQRES 3 A 336 LEU PHE PHE LEU SER HIS MET HIS SER ASP HIS THR VAL SEQRES 4 A 336 GLY LEU SER SER THR TRP ALA ARG PRO LEU TYR CYS SER SEQRES 5 A 336 PRO ILE THR ALA HIS LEU LEU HIS ARG HIS LEU GLN VAL SEQRES 6 A 336 SER LYS GLN TRP ILE GLN ALA LEU GLU VAL GLY GLU SER SEQRES 7 A 336 HIS VAL LEU PRO LEU ASP GLU ILE GLY GLN GLU THR MET SEQRES 8 A 336 THR VAL THR LEU LEU ASP ALA ASN HIS CYS PRO GLY SER SEQRES 9 A 336 VAL MET PHE LEU PHE GLU GLY TYR PHE GLY THR ILE LEU SEQRES 10 A 336 TYR THR GLY ASP PHE ARG TYR THR PRO SER MET LEU LYS SEQRES 11 A 336 GLU PRO ALA LEU THR LEU GLY LYS GLN ILE HIS THR LEU SEQRES 12 A 336 TYR LEU ASP ASN THR ASN CYS ASN PRO ALA LEU VAL LEU SEQRES 13 A 336 PRO SER ARG GLN GLU ALA ALA HIS GLN ILE VAL GLN LEU SEQRES 14 A 336 ILE ARG LYS HIS PRO GLN HIS ASN ILE LYS ILE GLY LEU SEQRES 15 A 336 TYR SER LEU GLY LYS GLU SER LEU LEU GLU GLN LEU ALA SEQRES 16 A 336 LEU GLU PHE GLN THR TRP VAL VAL LEU SER PRO ARG ARG SEQRES 17 A 336 LEU GLU LEU VAL GLN LEU LEU GLY LEU ALA ASP VAL PHE SEQRES 18 A 336 THR VAL GLU GLU LYS ALA GLY ARG ILE HIS ALA VAL ASP SEQRES 19 A 336 HIS MET GLU ILE CYS HIS SER ASN MET LEU ARG TRP ASN SEQRES 20 A 336 GLN THR HIS PRO THR ILE ALA ILE LEU PRO THR SER ARG SEQRES 21 A 336 LYS ILE HIS SER SER HIS PRO ASP ILE HIS VAL ILE PRO SEQRES 22 A 336 TYR SER ASP HIS SER SER TYR SER GLU LEU ARG ALA PHE SEQRES 23 A 336 VAL ALA ALA LEU LYS PRO CYS GLN VAL VAL PRO ILE VAL SEQRES 24 A 336 SER ARG ARG PRO CYS GLY GLY PHE GLN ASP SER LEU SER SEQRES 25 A 336 PRO ARG ILE SER VAL PRO LEU ILE PRO ASP SER VAL GLN SEQRES 26 A 336 GLN TYR MET SER SER PHE SER ARG LYS PRO SER HET EDO A1314 4 HET EDO A1315 4 HET EDO A1316 4 HET EDO A1317 4 HET EDO A1318 4 HET TLA A1319 10 HET ZN A1320 1 HET ZN A1321 1 HET TLA A1322 10 HET EDO A1323 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM TLA L(+)-TARTARIC ACID HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 6(C2 H6 O2) FORMUL 7 TLA 2(C4 H6 O6) FORMUL 8 ZN 2(ZN 2+) FORMUL 12 HOH *233(H2 O) HELIX 1 1 SER A 17 GLY A 22 1 6 HELIX 2 2 HIS A 33 THR A 37 5 5 HELIX 3 3 SER A 51 LEU A 62 1 12 HELIX 4 4 THR A 124 GLU A 130 5 7 HELIX 5 5 GLU A 130 THR A 134 5 5 HELIX 6 6 SER A 157 LYS A 171 1 15 HELIX 7 7 LYS A 186 PHE A 197 1 12 HELIX 8 8 SER A 204 GLY A 215 1 12 HELIX 9 9 GLU A 223 GLY A 227 5 5 HELIX 10 10 MET A 235 ILE A 237 5 3 HELIX 11 11 CYS A 238 GLN A 247 1 10 HELIX 12 12 SER A 278 LYS A 290 1 13 HELIX 13 13 PHE A 306 LEU A 310 5 5 SHEET 1 AA 5 VAL A 4 ILE A 6 0 SHEET 2 AA 5 ILE A 11 VAL A 13 -1 O ILE A 11 N ILE A 6 SHEET 3 AA 5 LEU A 26 PHE A 28 1 O LEU A 26 N ALA A 12 SHEET 4 AA 5 LEU A 48 CYS A 50 1 N TYR A 49 O PHE A 27 SHEET 5 AA 5 ILE A 69 ALA A 71 1 O GLN A 70 N CYS A 50 SHEET 1 AB 6 SER A 77 PRO A 81 0 SHEET 2 AB 6 THR A 89 ASP A 96 -1 O MET A 90 N LEU A 80 SHEET 3 AB 6 VAL A 104 GLY A 110 -1 O MET A 105 N LEU A 95 SHEET 4 AB 6 GLY A 113 TYR A 117 -1 O GLY A 113 N GLY A 110 SHEET 5 AB 6 THR A 141 LEU A 144 1 O THR A 141 N LEU A 116 SHEET 6 AB 6 VAL A 294 PRO A 296 1 O VAL A 295 N LEU A 144 SHEET 1 AC 6 PHE A 220 THR A 221 0 SHEET 2 AC 6 VAL A 201 VAL A 202 1 O VAL A 201 N THR A 221 SHEET 3 AC 6 ILE A 229 ASP A 233 1 O ILE A 229 N VAL A 202 SHEET 4 AC 6 ASN A 176 LEU A 181 1 O ILE A 177 N HIS A 230 SHEET 5 AC 6 THR A 251 PRO A 256 1 O ILE A 252 N LYS A 178 SHEET 6 AC 6 ILE A 268 ILE A 271 1 O HIS A 269 N LEU A 255 LINK O11 TLA A1319 ZN ZN A1321 1555 1555 2.12 LINK O2 TLA A1319 ZN ZN A1320 1555 1555 2.19 LINK O2 TLA A1319 ZN ZN A1321 1555 1555 2.52 LINK O41 TLA A1319 ZN ZN A1320 1555 1555 2.32 LINK ZN ZN A1320 OD2 ASP A 35 1555 1555 2.70 LINK ZN ZN A1320 NE2 HIS A 36 1555 1555 2.27 LINK ZN ZN A1320 OD2 ASP A 120 1555 1555 2.22 LINK ZN ZN A1320 O HOH A2006 1555 1555 2.19 LINK ZN ZN A1321 ND1 HIS A 33 1555 1555 2.13 LINK ZN ZN A1321 OD2 ASP A 120 1555 1555 2.27 LINK ZN ZN A1321 NE2 HIS A 99 1555 1555 2.31 LINK ZN ZN A1321 NE2 HIS A 31 1555 1555 2.15 SITE 1 AC1 5 ASN A 176 LYS A 178 GLU A 224 TRP A 245 SITE 2 AC1 5 THR A 251 SITE 1 AC2 5 LEU A 133 LYS A 137 LEU A 289 HOH A2133 SITE 2 AC2 5 HOH A2135 SITE 1 AC3 7 ILE A 53 ASP A 96 GLY A 102 SER A 103 SITE 2 AC3 7 VAL A 104 HOH A2069 HOH A2122 SITE 1 AC4 4 THR A 89 THR A 91 GLU A 109 HOH A2123 SITE 1 AC5 6 GLY A 39 SER A 41 THR A 43 ILE A 85 SITE 2 AC5 6 GLY A 86 HOH A2060 SITE 1 AC6 13 HIS A 33 ASP A 35 HIS A 36 HIS A 99 SITE 2 AC6 13 ASP A 120 TYR A 182 HIS A 276 ZN A1320 SITE 3 AC6 13 ZN A1321 TLA A1322 HOH A2006 HOH A2145 SITE 4 AC6 13 HOH A2175 SITE 1 AC7 6 ASP A 35 HIS A 36 ASP A 120 TLA A1319 SITE 2 AC7 6 ZN A1321 HOH A2006 SITE 1 AC8 6 HIS A 31 HIS A 33 HIS A 99 ASP A 120 SITE 2 AC8 6 TLA A1319 ZN A1320 SITE 1 AC9 12 TYR A 182 LYS A 186 THR A 257 SER A 258 SITE 2 AC9 12 ARG A 259 SER A 274 ASP A 275 HIS A 276 SITE 3 AC9 12 TLA A1319 EDO A1323 HOH A2171 HOH A2175 SITE 1 BC1 4 GLY A 180 LYS A 186 PRO A 256 TLA A1322 CRYST1 143.092 143.092 143.092 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006989 0.00000