HEADER TRANSFERASE 09-FEB-15 5AHU TITLE T. BRUCEI FARNESYL DIPHOSPHATE SYNTHASE COMPLEXED WITH BISPHOSPHONATE TITLE 2 BPH-1326 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE, PUTATIVE; COMPND 3 CHAIN: A, C; COMPND 4 EC: 2.5.1.10; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 11 ORGANISM_TAXID: 5691; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.YANG,E.OLDFIELD,J.H.NO REVDAT 5 10-JAN-24 5AHU 1 REMARK LINK REVDAT 4 06-FEB-19 5AHU 1 REMARK REVDAT 3 30-JAN-19 5AHU 1 REMARK REVDAT 2 02-DEC-15 5AHU 1 JRNL REVDAT 1 28-OCT-15 5AHU 0 JRNL AUTH G.YANG,W.ZHU,K.KIM,S.Y.BYUN,G.CHOI,K.WANG,J.S.CHA,H.CHO, JRNL AUTH 2 E.OLDFIELD,J.H.NO JRNL TITL INHIBITION OF TRYPANOSOMA BRUCEI CELL GROWTH BY LIPOPHILIC JRNL TITL 2 BISPHOSPHONATES: AN IN VITRO AND IN VIVO INVESTIGATION. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 59 7530 2015 JRNL REFN ISSN 0066-4804 JRNL PMID 26392508 JRNL DOI 10.1128/AAC.01873-15 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 22322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1212 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.316 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5870 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5546 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7944 ; 1.522 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12764 ; 2.422 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 710 ; 5.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 270 ;39.431 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1030 ;17.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.784 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6544 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1332 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2852 ; 2.629 ; 4.113 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2851 ; 2.626 ; 4.111 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3558 ; 4.152 ; 6.153 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3018 ; 3.545 ; 4.472 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5AHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290062845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 33.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 2P1C REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% MPD, 0.1 AMMONIUM ACETATE, PH 5.75, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 25.25346 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.54531 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 25.25346 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 61.54531 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -174.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 123 CG OD1 OD2 REMARK 470 ARG B 266 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 123 CG OD1 OD2 REMARK 470 ARG D 266 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA LYS D 361 O HOH D 2061 0.80 REMARK 500 CD PRO B 263 O HOH B 2046 1.22 REMARK 500 CB LYS D 361 O HOH D 2061 1.30 REMARK 500 C LYS D 361 O HOH D 2061 1.38 REMARK 500 O LYS D 361 O HOH D 2061 1.86 REMARK 500 O ALA D 198 O HOH D 2026 2.14 REMARK 500 CG PRO B 263 O HOH B 2046 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR D 213 -37.04 -131.90 REMARK 500 ASP D 306 129.92 -36.63 REMARK 500 SER D 348 48.50 -157.40 REMARK 500 TYR D 363 117.39 -38.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1369 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 103 OD1 REMARK 620 2 ASP B 107 OD1 85.2 REMARK 620 3 ASP B 107 OD2 79.6 52.3 REMARK 620 4 G76 B1368 O16 76.4 117.6 65.7 REMARK 620 5 HOH B2007 O 90.6 58.7 110.8 166.9 REMARK 620 6 HOH B2008 O 83.5 159.3 141.1 76.3 104.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1370 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 103 OD2 REMARK 620 2 ASP B 107 OD2 86.7 REMARK 620 3 G76 B1368 O16 85.1 77.6 REMARK 620 4 G76 B1368 O20 86.5 171.7 97.1 REMARK 620 5 HOH B2009 O 171.2 87.6 100.1 99.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1371 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 255 OD2 REMARK 620 2 G76 B1368 O17 90.6 REMARK 620 3 G76 B1368 O22 80.3 76.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1369 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 103 OD2 REMARK 620 2 ASP D 107 OD2 76.5 REMARK 620 3 G76 D1368 O22 85.7 129.3 REMARK 620 4 G76 D1368 O18 68.5 60.0 69.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1371 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 103 OD1 REMARK 620 2 ASP D 107 OD2 66.4 REMARK 620 3 G76 D1368 O18 73.2 56.6 REMARK 620 4 HOH D2008 O 88.9 149.5 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1370 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 255 OD2 REMARK 620 2 G76 D1368 O16 89.7 REMARK 620 3 G76 D1368 O21 87.2 87.5 REMARK 620 4 HOH D2036 O 163.6 76.6 83.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G76 D 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G76 B 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 1371 DBREF 5AHU A 1 63 UNP C9ZSP7 C9ZSP7_TRYB9 1 63 DBREF 5AHU B 74 367 UNP Q86C09 Q86C09_9TRYP 74 367 DBREF 5AHU C 1 63 UNP C9ZSP7 C9ZSP7_TRYB9 1 63 DBREF 5AHU D 74 367 UNP Q86C09 Q86C09_9TRYP 74 367 SEQRES 1 A 63 MET PRO MET GLN MET PHE MET GLN VAL TYR ASP GLU ILE SEQRES 2 A 63 GLN MET PHE LEU LEU GLU GLU LEU GLU LEU LYS PHE ASP SEQRES 3 A 63 MET ASP PRO ASN ARG VAL ARG TYR LEU ARG LYS MET MET SEQRES 4 A 63 ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY LEU SEQRES 5 A 63 THR VAL ILE ASP VAL ALA GLU SER LEU LEU SER SEQRES 1 B 294 ASP GLY ALA ARG ARG LYS ARG VAL LEU HIS ASP ALA CYS SEQRES 2 B 294 VAL CYS GLY TRP MET ILE GLU PHE LEU GLN ALA HIS TYR SEQRES 3 B 294 LEU VAL GLU ASP ASP ILE MET ASP ASN SER VAL THR ARG SEQRES 4 B 294 ARG GLY LYS PRO CYS TRP TYR ARG HIS PRO ASP VAL THR SEQRES 5 B 294 VAL GLN CYS ALA ILE ASN ASP GLY LEU LEU LEU LYS SER SEQRES 6 B 294 TRP THR HIS MET MET ALA MET HIS PHE PHE ALA ASP ARG SEQRES 7 B 294 PRO PHE LEU GLN ASP LEU LEU CYS ARG PHE ASN ARG VAL SEQRES 8 B 294 ASP TYR THR THR ALA VAL GLY GLN LEU TYR ASP VAL THR SEQRES 9 B 294 SER MET PHE ASP SER ASN LYS LEU ASP PRO ASP VAL SER SEQRES 10 B 294 GLN PRO THR THR THR ASP PHE ALA GLU PHE THR LEU SER SEQRES 11 B 294 ASN TYR LYS ARG ILE VAL LYS TYR LYS THR ALA TYR TYR SEQRES 12 B 294 THR TYR LEU LEU PRO LEU VAL MET GLY LEU ILE VAL SER SEQRES 13 B 294 GLU ALA LEU PRO THR VAL ASP MET GLY VAL THR GLU GLU SEQRES 14 B 294 LEU ALA MET LEU MET GLY GLU TYR PHE GLN VAL GLN ASP SEQRES 15 B 294 ASP VAL MET ASP CYS PHE THR PRO PRO GLU ARG LEU GLY SEQRES 16 B 294 LYS VAL GLY THR ASP ILE GLN ASP ALA LYS CYS SER TRP SEQRES 17 B 294 LEU ALA VAL THR PHE LEU ALA LYS ALA SER SER ALA GLN SEQRES 18 B 294 VAL ALA GLU PHE LYS ALA ASN TYR GLY SER GLY ASP SER SEQRES 19 B 294 GLU LYS VAL ALA THR VAL ARG ARG LEU TYR GLU GLU ALA SEQRES 20 B 294 ASP LEU GLN GLY ASP TYR VAL ALA TYR GLU ALA ALA VAL SEQRES 21 B 294 ALA GLU GLN VAL LYS GLU LEU ILE GLU LYS LEU ARG LEU SEQRES 22 B 294 CYS SER PRO GLY PHE ALA ALA SER VAL GLU THR LEU TRP SEQRES 23 B 294 GLY LYS THR TYR LYS ARG GLN LYS SEQRES 1 C 63 MET PRO MET GLN MET PHE MET GLN VAL TYR ASP GLU ILE SEQRES 2 C 63 GLN MET PHE LEU LEU GLU GLU LEU GLU LEU LYS PHE ASP SEQRES 3 C 63 MET ASP PRO ASN ARG VAL ARG TYR LEU ARG LYS MET MET SEQRES 4 C 63 ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY LEU SEQRES 5 C 63 THR VAL ILE ASP VAL ALA GLU SER LEU LEU SER SEQRES 1 D 294 ASP GLY ALA ARG ARG LYS ARG VAL LEU HIS ASP ALA CYS SEQRES 2 D 294 VAL CYS GLY TRP MET ILE GLU PHE LEU GLN ALA HIS TYR SEQRES 3 D 294 LEU VAL GLU ASP ASP ILE MET ASP ASN SER VAL THR ARG SEQRES 4 D 294 ARG GLY LYS PRO CYS TRP TYR ARG HIS PRO ASP VAL THR SEQRES 5 D 294 VAL GLN CYS ALA ILE ASN ASP GLY LEU LEU LEU LYS SER SEQRES 6 D 294 TRP THR HIS MET MET ALA MET HIS PHE PHE ALA ASP ARG SEQRES 7 D 294 PRO PHE LEU GLN ASP LEU LEU CYS ARG PHE ASN ARG VAL SEQRES 8 D 294 ASP TYR THR THR ALA VAL GLY GLN LEU TYR ASP VAL THR SEQRES 9 D 294 SER MET PHE ASP SER ASN LYS LEU ASP PRO ASP VAL SER SEQRES 10 D 294 GLN PRO THR THR THR ASP PHE ALA GLU PHE THR LEU SER SEQRES 11 D 294 ASN TYR LYS ARG ILE VAL LYS TYR LYS THR ALA TYR TYR SEQRES 12 D 294 THR TYR LEU LEU PRO LEU VAL MET GLY LEU ILE VAL SER SEQRES 13 D 294 GLU ALA LEU PRO THR VAL ASP MET GLY VAL THR GLU GLU SEQRES 14 D 294 LEU ALA MET LEU MET GLY GLU TYR PHE GLN VAL GLN ASP SEQRES 15 D 294 ASP VAL MET ASP CYS PHE THR PRO PRO GLU ARG LEU GLY SEQRES 16 D 294 LYS VAL GLY THR ASP ILE GLN ASP ALA LYS CYS SER TRP SEQRES 17 D 294 LEU ALA VAL THR PHE LEU ALA LYS ALA SER SER ALA GLN SEQRES 18 D 294 VAL ALA GLU PHE LYS ALA ASN TYR GLY SER GLY ASP SER SEQRES 19 D 294 GLU LYS VAL ALA THR VAL ARG ARG LEU TYR GLU GLU ALA SEQRES 20 D 294 ASP LEU GLN GLY ASP TYR VAL ALA TYR GLU ALA ALA VAL SEQRES 21 D 294 ALA GLU GLN VAL LYS GLU LEU ILE GLU LYS LEU ARG LEU SEQRES 22 D 294 CYS SER PRO GLY PHE ALA ALA SER VAL GLU THR LEU TRP SEQRES 23 D 294 GLY LYS THR TYR LYS ARG GLN LYS HET G76 B1368 22 HET MG B1369 1 HET MG B1370 1 HET MG B1371 1 HET G76 D1368 22 HET MG D1369 1 HET MG D1370 1 HET MG D1371 1 HETNAM G76 [2-(1-HEPTYL-1H-IMIDAZOL-3-IUM-3-YL)ETHANE-1,1- HETNAM 2 G76 DIYL]BIS(PHOSPHONATE) HETNAM MG MAGNESIUM ION FORMUL 5 G76 2(C12 H21 N2 O6 P2 3-) FORMUL 6 MG 6(MG 2+) FORMUL 13 HOH *172(H2 O) HELIX 1 1 MET A 1 PHE A 25 1 25 HELIX 2 2 ASP A 28 LEU A 44 1 17 HELIX 3 3 TYR A 48 SER A 63 1 16 HELIX 4 4 GLY B 75 ASN B 108 1 34 HELIX 5 5 TRP B 118 HIS B 121 5 4 HELIX 6 6 THR B 125 ALA B 149 1 25 HELIX 7 7 PHE B 153 THR B 177 1 25 HELIX 8 8 ASP B 181 LEU B 185 5 5 HELIX 9 9 THR B 201 THR B 213 1 13 HELIX 10 10 THR B 213 TYR B 218 1 6 HELIX 11 11 TYR B 218 SER B 229 1 12 HELIX 12 12 ALA B 231 VAL B 235 5 5 HELIX 13 13 ASP B 236 THR B 262 1 27 HELIX 14 14 PRO B 263 GLY B 268 1 6 HELIX 15 15 SER B 280 ALA B 290 1 11 HELIX 16 16 SER B 291 TYR B 302 1 12 HELIX 17 17 ASP B 306 ALA B 320 1 15 HELIX 18 18 ASP B 321 LEU B 346 1 26 HELIX 19 19 SER B 348 TYR B 363 1 16 HELIX 20 20 MET C 1 PHE C 25 1 25 HELIX 21 21 ASP C 28 LEU C 44 1 17 HELIX 22 22 TYR C 48 LEU C 62 1 15 HELIX 23 23 GLY D 75 ASN D 108 1 34 HELIX 24 24 TRP D 118 HIS D 121 5 4 HELIX 25 25 THR D 125 PHE D 148 1 24 HELIX 26 26 PHE D 153 THR D 177 1 25 HELIX 27 27 ASP D 181 LEU D 185 5 5 HELIX 28 28 THR D 201 THR D 213 1 13 HELIX 29 29 THR D 213 TYR D 218 1 6 HELIX 30 30 TYR D 218 SER D 229 1 12 HELIX 31 31 ALA D 231 VAL D 235 5 5 HELIX 32 32 ASP D 236 THR D 262 1 27 HELIX 33 33 PRO D 263 GLY D 268 1 6 HELIX 34 34 SER D 280 ALA D 290 1 11 HELIX 35 35 SER D 291 ALA D 300 1 10 HELIX 36 36 ASP D 306 ALA D 320 1 15 HELIX 37 37 ASP D 321 LEU D 346 1 26 HELIX 38 38 SER D 348 LYS D 361 1 14 SHEET 1 BA 2 THR B 111 ARG B 112 0 SHEET 2 BA 2 LYS B 115 PRO B 116 -1 O LYS B 115 N ARG B 112 SHEET 1 DA 2 THR D 111 ARG D 112 0 SHEET 2 DA 2 LYS D 115 PRO D 116 -1 O LYS D 115 N ARG D 112 LINK OD1 ASP B 103 MG MG B1369 1555 1555 2.13 LINK OD2 ASP B 103 MG MG B1370 1555 1555 2.04 LINK OD1 ASP B 107 MG MG B1369 1555 1555 2.62 LINK OD2 ASP B 107 MG MG B1369 1555 1555 2.43 LINK OD2 ASP B 107 MG MG B1370 1555 1555 1.99 LINK OD2 ASP B 255 MG MG B1371 1555 1555 2.14 LINK O16 G76 B1368 MG MG B1369 1555 1555 2.42 LINK O16 G76 B1368 MG MG B1370 1555 1555 2.21 LINK O20 G76 B1368 MG MG B1370 1555 1555 2.01 LINK O17 G76 B1368 MG MG B1371 1555 1555 2.16 LINK O22 G76 B1368 MG MG B1371 1555 1555 2.48 LINK MG MG B1369 O HOH B2007 1555 1555 2.34 LINK MG MG B1369 O HOH B2008 1555 1555 2.07 LINK MG MG B1370 O HOH B2009 1555 1555 2.27 LINK OD2 ASP D 103 MG MG D1369 1555 1555 1.93 LINK OD1 ASP D 103 MG MG D1371 1555 1555 2.25 LINK OD2 ASP D 107 MG MG D1369 1555 1555 2.25 LINK OD2 ASP D 107 MG MG D1371 1555 1555 2.52 LINK OD2 ASP D 255 MG MG D1370 1555 1555 2.13 LINK O22 G76 D1368 MG MG D1369 1555 1555 2.22 LINK O18 G76 D1368 MG MG D1369 1555 1555 2.59 LINK O16 G76 D1368 MG MG D1370 1555 1555 2.33 LINK O21 G76 D1368 MG MG D1370 1555 1555 2.05 LINK O18 G76 D1368 MG MG D1371 1555 1555 2.62 LINK MG MG D1370 O HOH D2036 1555 1555 2.15 LINK MG MG D1371 O HOH D2008 1555 1555 2.41 SITE 1 AC1 18 LEU B 134 TYR D 99 ASP D 103 MET D 106 SITE 2 AC1 18 ASP D 107 ARG D 112 ALA D 169 GLN D 172 SITE 3 AC1 18 LYS D 212 THR D 213 GLN D 252 ASP D 255 SITE 4 AC1 18 LYS D 269 MG D1369 MG D1370 MG D1371 SITE 5 AC1 18 HOH D2008 HOH D2036 SITE 1 AC2 16 TYR B 99 ASP B 103 ASP B 107 ARG B 112 SITE 2 AC2 16 ALA B 169 GLN B 172 LYS B 212 THR B 213 SITE 3 AC2 16 ASP B 255 LYS B 269 MG B1369 MG B1370 SITE 4 AC2 16 MG B1371 HOH B2008 ASN D 131 LEU D 134 SITE 1 AC3 8 ASP B 103 ASP B 107 GLN B 172 LYS B 278 SITE 2 AC3 8 G76 B1368 MG B1370 HOH B2007 HOH B2008 SITE 1 AC4 5 ASP B 103 ASP B 107 G76 B1368 MG B1369 SITE 2 AC4 5 HOH B2009 SITE 1 AC5 4 ASP B 255 ASP B 259 ASP B 273 G76 B1368 SITE 1 AC6 5 ASP D 103 ASP D 104 ASP D 107 SER D 109 SITE 2 AC6 5 G76 D1368 SITE 1 AC7 4 ASP D 255 ASP D 259 G76 D1368 HOH D2036 SITE 1 AC8 6 ASP D 103 ASP D 107 GLN D 172 ASP D 175 SITE 2 AC8 6 G76 D1368 HOH D2008 CRYST1 63.010 117.860 123.724 90.00 95.80 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015870 0.000000 0.001612 0.00000 SCALE2 0.000000 0.008485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008124 0.00000