data_5AI2 # _entry.id 5AI2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5AI2 pdb_00005ai2 10.2210/pdb5ai2/pdb PDBE EBI-63011 ? ? WWPDB D_1290063011 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-02 2 'Structure model' 1 1 2016-05-11 3 'Structure model' 1 2 2016-08-24 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Non-polymer description' 3 2 'Structure model' Other 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.value' 9 4 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 22 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AI2 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-02-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 5AI3 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'X-RAY STRUCTURE OF 113CD-SUBSTITUTED PERDEUTERATED PYROCOCCUS FURIOSUS RUBREDOXIN TO 1.02A RESOLUTION AT 295K IN A QUARTZ CAPILLARY' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuypers, M.G.' 1 'Mossou, E.' 2 'Mason, S.A.' 3 # _citation.id primary _citation.title 'Macromolecular Structure Phasing by Neutron Anomalous Diffraction.' _citation.journal_abbrev Sci.Rep. _citation.journal_volume 6 _citation.page_first 31487 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2045-2322 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27511806 _citation.pdbx_database_id_DOI 10.1038/SREP31487 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cuypers, M.G.' 1 ? primary 'Mason, S.A.' 2 ? primary 'Mossou, E.' 3 ? primary 'Haertlein, M.' 4 ? primary 'Forsyth, V.T.' 5 ? primary 'Mitchell, E.P.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat RUBREDOXIN 6031.728 1 ? ? ? 'PERDEUTERATED, 113-CD SUBSTITUTED, CARBOXYLIC DEUTERONS' 2 non-polymer syn 'CADMIUM ION' 112.411 1 ? ? ? ? 3 non-polymer syn 'deuterium(1+)' 2.014 3 ? ? ? ? 4 water nat water 18.015 48 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_seq_one_letter_code_can MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 'deuterium(1+)' D8U 4 water DOD # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 TRP n 1 5 VAL n 1 6 CYS n 1 7 LYS n 1 8 ILE n 1 9 CYS n 1 10 GLY n 1 11 TYR n 1 12 ILE n 1 13 TYR n 1 14 ASP n 1 15 GLU n 1 16 ASP n 1 17 ALA n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 ILE n 1 25 SER n 1 26 PRO n 1 27 GLY n 1 28 THR n 1 29 LYS n 1 30 PHE n 1 31 GLU n 1 32 GLU n 1 33 LEU n 1 34 PRO n 1 35 ASP n 1 36 ASP n 1 37 TRP n 1 38 VAL n 1 39 CYS n 1 40 PRO n 1 41 ILE n 1 42 CYS n 1 43 GLY n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 SER n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 LYS n 1 52 LEU n 1 53 GLU n 1 54 ASP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'PYROCOCCUS FURIOSUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 2261 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 D8U non-polymer . 'deuterium(1+)' ? 'D 1' 2.014 DOD non-polymer . 'DEUTERATED WATER' ? 'D2 O' 20.028 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 ALA 2 1 1 ALA ALA A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 TRP 4 3 3 TRP TRP A . n A 1 5 VAL 5 4 4 VAL VAL A . n A 1 6 CYS 6 5 5 CYS CYS A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 CYS 9 8 8 CYS CYS A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 TYR 13 12 12 TYR TYR A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 ASP 16 15 15 ASP ASP A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 ILE 24 23 23 ILE ILE A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 ASP 35 34 34 ASP ASP A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 TRP 37 36 36 TRP TRP A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 CYS 39 38 38 CYS CYS A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 CYS 42 41 41 CYS CYS A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 PRO 45 44 44 PRO PRO A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 GLU 53 52 52 GLU GLU A . n A 1 54 ASP 54 53 53 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 1054 1054 CD CD A . C 3 D8U 1 1055 1055 D8U D8U A . D 3 D8U 1 1056 1056 D8U D8U A . E 3 D8U 1 1057 1057 D8U D8U A . F 4 DOD 1 2001 2001 DOD DOD A . F 4 DOD 2 2002 2002 DOD DOD A . F 4 DOD 3 2003 2003 DOD DOD A . F 4 DOD 4 2005 2005 DOD DOD A . F 4 DOD 5 2006 2006 DOD DOD A . F 4 DOD 6 2007 2007 DOD DOD A . F 4 DOD 7 2008 2008 DOD DOD A . F 4 DOD 8 2010 2010 DOD DOD A . F 4 DOD 9 2013 2013 DOD DOD A . F 4 DOD 10 2009 2009 DOD DOD A . F 4 DOD 11 2011 2011 DOD DOD A . F 4 DOD 12 2012 2012 DOD DOD A . F 4 DOD 13 2014 2014 DOD DOD A . F 4 DOD 14 2015 2015 DOD DOD A . F 4 DOD 15 2016 2016 DOD DOD A . F 4 DOD 16 2017 2017 DOD DOD A . F 4 DOD 17 2018 2018 DOD DOD A . F 4 DOD 18 2019 2019 DOD DOD A . F 4 DOD 19 2020 2020 DOD DOD A . F 4 DOD 20 2022 2022 DOD DOD A . F 4 DOD 21 2023 2023 DOD DOD A . F 4 DOD 22 2032 2032 DOD DOD A . F 4 DOD 23 2033 2033 DOD DOD A . F 4 DOD 24 2036 2036 DOD DOD A . F 4 DOD 25 2037 2037 DOD DOD A . F 4 DOD 26 2038 2038 DOD DOD A . F 4 DOD 27 2041 2041 DOD DOD A . F 4 DOD 28 2042 2042 DOD DOD A . F 4 DOD 29 2043 2043 DOD DOD A . F 4 DOD 30 2044 2044 DOD DOD A . F 4 DOD 31 2046 2046 DOD DOD A . F 4 DOD 32 2049 2049 DOD DOD A . F 4 DOD 33 2050 2050 DOD DOD A . F 4 DOD 34 2051 2051 DOD DOD A . F 4 DOD 35 2052 2052 DOD DOD A . F 4 DOD 36 2053 2053 DOD DOD A . F 4 DOD 37 2054 2054 DOD DOD A . F 4 DOD 38 2055 2055 DOD DOD A . F 4 DOD 39 2056 2056 DOD DOD A . F 4 DOD 40 2057 2057 DOD DOD A . F 4 DOD 41 2058 2058 DOD DOD A . F 4 DOD 42 2059 2059 DOD DOD A . F 4 DOD 43 2060 2060 DOD DOD A . F 4 DOD 44 2061 2061 DOD DOD A . F 4 DOD 45 2062 2062 DOD DOD A . F 4 DOD 46 2063 2063 DOD DOD A . F 4 DOD 47 2064 2064 DOD DOD A . F 4 DOD 48 2065 2065 DOD DOD A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement . ? 1 SHELXCD phasing . ? 2 SHELXE phasing . ? 3 RETREAT 'data reduction' . ? 4 RETREAT 'data scaling' . ? 5 # _cell.entry_id 5AI2 _cell.length_a 34.440 _cell.length_b 34.140 _cell.length_c 43.780 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AI2 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 5AI2 _exptl.method 'NEUTRON DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.35 _exptl_crystal.description 'RPIM GIVEN INSTEAD OF RSYM' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PH 6.5' # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector '5ATM 3HE, CURVED 120X30 DEGREES' _diffrn_detector.type 'INSTITUT LAUE LANGEVIN DETECTOR GROUP' _diffrn_detector.pdbx_collection_date 2014-12-01 _diffrn_detector.details 'BORON CARBIDE BEAM DEFINING APERTURE' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type neutron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.17 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'NUCLEAR REACTOR' _diffrn_source.type ILL _diffrn_source.pdbx_synchrotron_site ILL _diffrn_source.pdbx_synchrotron_beamline D19 _diffrn_source.pdbx_wavelength 1.17 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AI2 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.44 _reflns.d_resolution_high 1.75 _reflns.number_obs 5560 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rsym_value 0.04 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 8.70 _reflns.pdbx_redundancy 13.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.84 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.457 _reflns_shell.pdbx_Rsym_value 0.149 _reflns_shell.meanI_over_sigI_obs 5.4 _reflns_shell.pdbx_redundancy 10.6 # _refine.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine.entry_id 5AI2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10050 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.068 _refine.ls_d_res_high 1.750 _refine.ls_percent_reflns_obs 99.81 _refine.ls_R_factor_obs 0.2357 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2331 _refine.ls_R_factor_R_free 0.2864 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 451 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'USED NEUTRON BOUND COHERENT SCATTERING LENGTH FOR 113-CD OF -8.0 FM FOR REFINEMENT' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct 'EXPERIMENTAL ANOMALOUS NEUTRON PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.21 _refine.pdbx_overall_phase_error 30.24 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 421 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 470 _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 27.068 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 992 'NEUTRON DIFFRACTION' ? f_angle_d 0.613 ? ? 1766 'NEUTRON DIFFRACTION' ? f_dihedral_angle_d 14.246 ? ? 258 'NEUTRON DIFFRACTION' ? f_chiral_restr 0.024 ? ? 63 'NEUTRON DIFFRACTION' ? f_plane_restr 0.002 ? ? 184 'NEUTRON DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'NEUTRON DIFFRACTION' . 1.7501 2.0032 3215 0.2154 100.00 0.2765 . . 156 . . 'NEUTRON DIFFRACTION' . 2.0032 2.5236 3230 0.2216 100.00 0.2552 . . 116 . . 'NEUTRON DIFFRACTION' . 2.5236 27.0716 3154 0.2490 100.00 0.3047 . . 179 . . # _database_PDB_matrix.entry_id 5AI2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5AI2 _struct.title ;Anomalous Neutron phased crystal structure of 113Cd-substituted Perdeuterated Pyrococcus furiosus rubredoxin to 1.75A resolution at 295K ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AI2 _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'ELECTRON TRANSPORT, NEUTRON ANOMALOUS PHASING, PERDEUTERATED, PYROCOCCUS FURIOSUS, RUBREDOXIN, CADMIUM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_PYRFU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P24297 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5AI2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 54 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P24297 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 54 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 53 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? GLY A 23 ? PRO A 19 GLY A 22 5 ? 4 HELX_P HELX_P2 2 LYS A 29 ? LEU A 33 ? LYS A 28 LEU A 32 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 6 SG ? ? ? 1_555 B CD . CD ? ? A CYS 5 A CD 1054 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 B CD . CD ? ? A CYS 8 A CD 1054 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc3 metalc ? ? A CYS 39 SG ? ? ? 1_555 B CD . CD ? ? A CYS 38 A CD 1054 1_555 ? ? ? ? ? ? ? 2.724 ? ? metalc4 metalc ? ? A CYS 42 SG ? ? ? 1_555 B CD . CD ? ? A CYS 41 A CD 1054 1_555 ? ? ? ? ? ? ? 2.732 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 6 ? A CYS 5 ? 1_555 CD ? B CD . ? A CD 1054 ? 1_555 SG ? A CYS 9 ? A CYS 8 ? 1_555 117.6 ? 2 SG ? A CYS 6 ? A CYS 5 ? 1_555 CD ? B CD . ? A CD 1054 ? 1_555 SG ? A CYS 39 ? A CYS 38 ? 1_555 99.4 ? 3 SG ? A CYS 9 ? A CYS 8 ? 1_555 CD ? B CD . ? A CD 1054 ? 1_555 SG ? A CYS 39 ? A CYS 38 ? 1_555 96.7 ? 4 SG ? A CYS 6 ? A CYS 5 ? 1_555 CD ? B CD . ? A CD 1054 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 103.9 ? 5 SG ? A CYS 9 ? A CYS 8 ? 1_555 CD ? B CD . ? A CD 1054 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 124.5 ? 6 SG ? A CYS 39 ? A CYS 38 ? 1_555 CD ? B CD . ? A CD 1054 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 111.8 ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 12 ? ASP A 14 ? ILE A 11 ASP A 13 AA 2 LYS A 3 ? CYS A 6 ? LYS A 2 CYS A 5 AA 3 PHE A 49 ? LYS A 51 ? PHE A 48 LYS A 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 13 ? N TYR A 12 O TRP A 4 ? O TRP A 3 AA 2 3 N VAL A 5 ? N VAL A 4 O GLU A 50 ? O GLU A 49 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CD _struct_site.pdbx_auth_seq_id 1054 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE CD A 1054' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 6 ? CYS A 5 . ? 1_555 ? 2 AC1 4 CYS A 9 ? CYS A 8 . ? 1_555 ? 3 AC1 4 CYS A 39 ? CYS A 38 . ? 1_555 ? 4 AC1 4 CYS A 42 ? CYS A 41 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 35 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 D _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 D8U _pdbx_validate_close_contact.auth_seq_id_2 1055 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.46 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 18 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -155.49 _pdbx_validate_torsion.psi 64.33 # _pdbx_entry_details.entry_id 5AI2 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;CADMIUM ION (CD): MINIMUM 95 PERCENT PURE 113-CD ISOTOPE IN CRYSTAL. TRACE AMOUNTS OF FE ONLY DETECTED BY CRYSTAL X-RAY FLUORESCENCE. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A DOD 2022 ? 6.89 . 2 1 O ? A DOD 2050 ? 6.43 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CD CD CD N N 47 CYS N N N N 48 CYS CA C N R 49 CYS C C N N 50 CYS O O N N 51 CYS CB C N N 52 CYS SG S N N 53 CYS OXT O N N 54 CYS H H N N 55 CYS H2 H N N 56 CYS HA H N N 57 CYS HB2 H N N 58 CYS HB3 H N N 59 CYS HG H N N 60 CYS HXT H N N 61 D8U D D N N 62 DOD O O N N 63 DOD D1 D N N 64 DOD D2 D N N 65 GLU N N N N 66 GLU CA C N S 67 GLU C C N N 68 GLU O O N N 69 GLU CB C N N 70 GLU CG C N N 71 GLU CD C N N 72 GLU OE1 O N N 73 GLU OE2 O N N 74 GLU OXT O N N 75 GLU H H N N 76 GLU H2 H N N 77 GLU HA H N N 78 GLU HB2 H N N 79 GLU HB3 H N N 80 GLU HG2 H N N 81 GLU HG3 H N N 82 GLU HE2 H N N 83 GLU HXT H N N 84 GLY N N N N 85 GLY CA C N N 86 GLY C C N N 87 GLY O O N N 88 GLY OXT O N N 89 GLY H H N N 90 GLY H2 H N N 91 GLY HA2 H N N 92 GLY HA3 H N N 93 GLY HXT H N N 94 ILE N N N N 95 ILE CA C N S 96 ILE C C N N 97 ILE O O N N 98 ILE CB C N S 99 ILE CG1 C N N 100 ILE CG2 C N N 101 ILE CD1 C N N 102 ILE OXT O N N 103 ILE H H N N 104 ILE H2 H N N 105 ILE HA H N N 106 ILE HB H N N 107 ILE HG12 H N N 108 ILE HG13 H N N 109 ILE HG21 H N N 110 ILE HG22 H N N 111 ILE HG23 H N N 112 ILE HD11 H N N 113 ILE HD12 H N N 114 ILE HD13 H N N 115 ILE HXT H N N 116 LEU N N N N 117 LEU CA C N S 118 LEU C C N N 119 LEU O O N N 120 LEU CB C N N 121 LEU CG C N N 122 LEU CD1 C N N 123 LEU CD2 C N N 124 LEU OXT O N N 125 LEU H H N N 126 LEU H2 H N N 127 LEU HA H N N 128 LEU HB2 H N N 129 LEU HB3 H N N 130 LEU HG H N N 131 LEU HD11 H N N 132 LEU HD12 H N N 133 LEU HD13 H N N 134 LEU HD21 H N N 135 LEU HD22 H N N 136 LEU HD23 H N N 137 LEU HXT H N N 138 LYS N N N N 139 LYS CA C N S 140 LYS C C N N 141 LYS O O N N 142 LYS CB C N N 143 LYS CG C N N 144 LYS CD C N N 145 LYS CE C N N 146 LYS NZ N N N 147 LYS OXT O N N 148 LYS H H N N 149 LYS H2 H N N 150 LYS HA H N N 151 LYS HB2 H N N 152 LYS HB3 H N N 153 LYS HG2 H N N 154 LYS HG3 H N N 155 LYS HD2 H N N 156 LYS HD3 H N N 157 LYS HE2 H N N 158 LYS HE3 H N N 159 LYS HZ1 H N N 160 LYS HZ2 H N N 161 LYS HZ3 H N N 162 LYS HXT H N N 163 MET N N N N 164 MET CA C N S 165 MET C C N N 166 MET O O N N 167 MET CB C N N 168 MET CG C N N 169 MET SD S N N 170 MET CE C N N 171 MET OXT O N N 172 MET H H N N 173 MET H2 H N N 174 MET HA H N N 175 MET HB2 H N N 176 MET HB3 H N N 177 MET HG2 H N N 178 MET HG3 H N N 179 MET HE1 H N N 180 MET HE2 H N N 181 MET HE3 H N N 182 MET HXT H N N 183 PHE N N N N 184 PHE CA C N S 185 PHE C C N N 186 PHE O O N N 187 PHE CB C N N 188 PHE CG C Y N 189 PHE CD1 C Y N 190 PHE CD2 C Y N 191 PHE CE1 C Y N 192 PHE CE2 C Y N 193 PHE CZ C Y N 194 PHE OXT O N N 195 PHE H H N N 196 PHE H2 H N N 197 PHE HA H N N 198 PHE HB2 H N N 199 PHE HB3 H N N 200 PHE HD1 H N N 201 PHE HD2 H N N 202 PHE HE1 H N N 203 PHE HE2 H N N 204 PHE HZ H N N 205 PHE HXT H N N 206 PRO N N N N 207 PRO CA C N S 208 PRO C C N N 209 PRO O O N N 210 PRO CB C N N 211 PRO CG C N N 212 PRO CD C N N 213 PRO OXT O N N 214 PRO H H N N 215 PRO HA H N N 216 PRO HB2 H N N 217 PRO HB3 H N N 218 PRO HG2 H N N 219 PRO HG3 H N N 220 PRO HD2 H N N 221 PRO HD3 H N N 222 PRO HXT H N N 223 SER N N N N 224 SER CA C N S 225 SER C C N N 226 SER O O N N 227 SER CB C N N 228 SER OG O N N 229 SER OXT O N N 230 SER H H N N 231 SER H2 H N N 232 SER HA H N N 233 SER HB2 H N N 234 SER HB3 H N N 235 SER HG H N N 236 SER HXT H N N 237 THR N N N N 238 THR CA C N S 239 THR C C N N 240 THR O O N N 241 THR CB C N R 242 THR OG1 O N N 243 THR CG2 C N N 244 THR OXT O N N 245 THR H H N N 246 THR H2 H N N 247 THR HA H N N 248 THR HB H N N 249 THR HG1 H N N 250 THR HG21 H N N 251 THR HG22 H N N 252 THR HG23 H N N 253 THR HXT H N N 254 TRP N N N N 255 TRP CA C N S 256 TRP C C N N 257 TRP O O N N 258 TRP CB C N N 259 TRP CG C Y N 260 TRP CD1 C Y N 261 TRP CD2 C Y N 262 TRP NE1 N Y N 263 TRP CE2 C Y N 264 TRP CE3 C Y N 265 TRP CZ2 C Y N 266 TRP CZ3 C Y N 267 TRP CH2 C Y N 268 TRP OXT O N N 269 TRP H H N N 270 TRP H2 H N N 271 TRP HA H N N 272 TRP HB2 H N N 273 TRP HB3 H N N 274 TRP HD1 H N N 275 TRP HE1 H N N 276 TRP HE3 H N N 277 TRP HZ2 H N N 278 TRP HZ3 H N N 279 TRP HH2 H N N 280 TRP HXT H N N 281 TYR N N N N 282 TYR CA C N S 283 TYR C C N N 284 TYR O O N N 285 TYR CB C N N 286 TYR CG C Y N 287 TYR CD1 C Y N 288 TYR CD2 C Y N 289 TYR CE1 C Y N 290 TYR CE2 C Y N 291 TYR CZ C Y N 292 TYR OH O N N 293 TYR OXT O N N 294 TYR H H N N 295 TYR H2 H N N 296 TYR HA H N N 297 TYR HB2 H N N 298 TYR HB3 H N N 299 TYR HD1 H N N 300 TYR HD2 H N N 301 TYR HE1 H N N 302 TYR HE2 H N N 303 TYR HH H N N 304 TYR HXT H N N 305 VAL N N N N 306 VAL CA C N S 307 VAL C C N N 308 VAL O O N N 309 VAL CB C N N 310 VAL CG1 C N N 311 VAL CG2 C N N 312 VAL OXT O N N 313 VAL H H N N 314 VAL H2 H N N 315 VAL HA H N N 316 VAL HB H N N 317 VAL HG11 H N N 318 VAL HG12 H N N 319 VAL HG13 H N N 320 VAL HG21 H N N 321 VAL HG22 H N N 322 VAL HG23 H N N 323 VAL HXT H N N 324 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 DOD O D1 sing N N 57 DOD O D2 sing N N 58 GLU N CA sing N N 59 GLU N H sing N N 60 GLU N H2 sing N N 61 GLU CA C sing N N 62 GLU CA CB sing N N 63 GLU CA HA sing N N 64 GLU C O doub N N 65 GLU C OXT sing N N 66 GLU CB CG sing N N 67 GLU CB HB2 sing N N 68 GLU CB HB3 sing N N 69 GLU CG CD sing N N 70 GLU CG HG2 sing N N 71 GLU CG HG3 sing N N 72 GLU CD OE1 doub N N 73 GLU CD OE2 sing N N 74 GLU OE2 HE2 sing N N 75 GLU OXT HXT sing N N 76 GLY N CA sing N N 77 GLY N H sing N N 78 GLY N H2 sing N N 79 GLY CA C sing N N 80 GLY CA HA2 sing N N 81 GLY CA HA3 sing N N 82 GLY C O doub N N 83 GLY C OXT sing N N 84 GLY OXT HXT sing N N 85 ILE N CA sing N N 86 ILE N H sing N N 87 ILE N H2 sing N N 88 ILE CA C sing N N 89 ILE CA CB sing N N 90 ILE CA HA sing N N 91 ILE C O doub N N 92 ILE C OXT sing N N 93 ILE CB CG1 sing N N 94 ILE CB CG2 sing N N 95 ILE CB HB sing N N 96 ILE CG1 CD1 sing N N 97 ILE CG1 HG12 sing N N 98 ILE CG1 HG13 sing N N 99 ILE CG2 HG21 sing N N 100 ILE CG2 HG22 sing N N 101 ILE CG2 HG23 sing N N 102 ILE CD1 HD11 sing N N 103 ILE CD1 HD12 sing N N 104 ILE CD1 HD13 sing N N 105 ILE OXT HXT sing N N 106 LEU N CA sing N N 107 LEU N H sing N N 108 LEU N H2 sing N N 109 LEU CA C sing N N 110 LEU CA CB sing N N 111 LEU CA HA sing N N 112 LEU C O doub N N 113 LEU C OXT sing N N 114 LEU CB CG sing N N 115 LEU CB HB2 sing N N 116 LEU CB HB3 sing N N 117 LEU CG CD1 sing N N 118 LEU CG CD2 sing N N 119 LEU CG HG sing N N 120 LEU CD1 HD11 sing N N 121 LEU CD1 HD12 sing N N 122 LEU CD1 HD13 sing N N 123 LEU CD2 HD21 sing N N 124 LEU CD2 HD22 sing N N 125 LEU CD2 HD23 sing N N 126 LEU OXT HXT sing N N 127 LYS N CA sing N N 128 LYS N H sing N N 129 LYS N H2 sing N N 130 LYS CA C sing N N 131 LYS CA CB sing N N 132 LYS CA HA sing N N 133 LYS C O doub N N 134 LYS C OXT sing N N 135 LYS CB CG sing N N 136 LYS CB HB2 sing N N 137 LYS CB HB3 sing N N 138 LYS CG CD sing N N 139 LYS CG HG2 sing N N 140 LYS CG HG3 sing N N 141 LYS CD CE sing N N 142 LYS CD HD2 sing N N 143 LYS CD HD3 sing N N 144 LYS CE NZ sing N N 145 LYS CE HE2 sing N N 146 LYS CE HE3 sing N N 147 LYS NZ HZ1 sing N N 148 LYS NZ HZ2 sing N N 149 LYS NZ HZ3 sing N N 150 LYS OXT HXT sing N N 151 MET N CA sing N N 152 MET N H sing N N 153 MET N H2 sing N N 154 MET CA C sing N N 155 MET CA CB sing N N 156 MET CA HA sing N N 157 MET C O doub N N 158 MET C OXT sing N N 159 MET CB CG sing N N 160 MET CB HB2 sing N N 161 MET CB HB3 sing N N 162 MET CG SD sing N N 163 MET CG HG2 sing N N 164 MET CG HG3 sing N N 165 MET SD CE sing N N 166 MET CE HE1 sing N N 167 MET CE HE2 sing N N 168 MET CE HE3 sing N N 169 MET OXT HXT sing N N 170 PHE N CA sing N N 171 PHE N H sing N N 172 PHE N H2 sing N N 173 PHE CA C sing N N 174 PHE CA CB sing N N 175 PHE CA HA sing N N 176 PHE C O doub N N 177 PHE C OXT sing N N 178 PHE CB CG sing N N 179 PHE CB HB2 sing N N 180 PHE CB HB3 sing N N 181 PHE CG CD1 doub Y N 182 PHE CG CD2 sing Y N 183 PHE CD1 CE1 sing Y N 184 PHE CD1 HD1 sing N N 185 PHE CD2 CE2 doub Y N 186 PHE CD2 HD2 sing N N 187 PHE CE1 CZ doub Y N 188 PHE CE1 HE1 sing N N 189 PHE CE2 CZ sing Y N 190 PHE CE2 HE2 sing N N 191 PHE CZ HZ sing N N 192 PHE OXT HXT sing N N 193 PRO N CA sing N N 194 PRO N CD sing N N 195 PRO N H sing N N 196 PRO CA C sing N N 197 PRO CA CB sing N N 198 PRO CA HA sing N N 199 PRO C O doub N N 200 PRO C OXT sing N N 201 PRO CB CG sing N N 202 PRO CB HB2 sing N N 203 PRO CB HB3 sing N N 204 PRO CG CD sing N N 205 PRO CG HG2 sing N N 206 PRO CG HG3 sing N N 207 PRO CD HD2 sing N N 208 PRO CD HD3 sing N N 209 PRO OXT HXT sing N N 210 SER N CA sing N N 211 SER N H sing N N 212 SER N H2 sing N N 213 SER CA C sing N N 214 SER CA CB sing N N 215 SER CA HA sing N N 216 SER C O doub N N 217 SER C OXT sing N N 218 SER CB OG sing N N 219 SER CB HB2 sing N N 220 SER CB HB3 sing N N 221 SER OG HG sing N N 222 SER OXT HXT sing N N 223 THR N CA sing N N 224 THR N H sing N N 225 THR N H2 sing N N 226 THR CA C sing N N 227 THR CA CB sing N N 228 THR CA HA sing N N 229 THR C O doub N N 230 THR C OXT sing N N 231 THR CB OG1 sing N N 232 THR CB CG2 sing N N 233 THR CB HB sing N N 234 THR OG1 HG1 sing N N 235 THR CG2 HG21 sing N N 236 THR CG2 HG22 sing N N 237 THR CG2 HG23 sing N N 238 THR OXT HXT sing N N 239 TRP N CA sing N N 240 TRP N H sing N N 241 TRP N H2 sing N N 242 TRP CA C sing N N 243 TRP CA CB sing N N 244 TRP CA HA sing N N 245 TRP C O doub N N 246 TRP C OXT sing N N 247 TRP CB CG sing N N 248 TRP CB HB2 sing N N 249 TRP CB HB3 sing N N 250 TRP CG CD1 doub Y N 251 TRP CG CD2 sing Y N 252 TRP CD1 NE1 sing Y N 253 TRP CD1 HD1 sing N N 254 TRP CD2 CE2 doub Y N 255 TRP CD2 CE3 sing Y N 256 TRP NE1 CE2 sing Y N 257 TRP NE1 HE1 sing N N 258 TRP CE2 CZ2 sing Y N 259 TRP CE3 CZ3 doub Y N 260 TRP CE3 HE3 sing N N 261 TRP CZ2 CH2 doub Y N 262 TRP CZ2 HZ2 sing N N 263 TRP CZ3 CH2 sing Y N 264 TRP CZ3 HZ3 sing N N 265 TRP CH2 HH2 sing N N 266 TRP OXT HXT sing N N 267 TYR N CA sing N N 268 TYR N H sing N N 269 TYR N H2 sing N N 270 TYR CA C sing N N 271 TYR CA CB sing N N 272 TYR CA HA sing N N 273 TYR C O doub N N 274 TYR C OXT sing N N 275 TYR CB CG sing N N 276 TYR CB HB2 sing N N 277 TYR CB HB3 sing N N 278 TYR CG CD1 doub Y N 279 TYR CG CD2 sing Y N 280 TYR CD1 CE1 sing Y N 281 TYR CD1 HD1 sing N N 282 TYR CD2 CE2 doub Y N 283 TYR CD2 HD2 sing N N 284 TYR CE1 CZ doub Y N 285 TYR CE1 HE1 sing N N 286 TYR CE2 CZ sing Y N 287 TYR CE2 HE2 sing N N 288 TYR CZ OH sing N N 289 TYR OH HH sing N N 290 TYR OXT HXT sing N N 291 VAL N CA sing N N 292 VAL N H sing N N 293 VAL N H2 sing N N 294 VAL CA C sing N N 295 VAL CA CB sing N N 296 VAL CA HA sing N N 297 VAL C O doub N N 298 VAL C OXT sing N N 299 VAL CB CG1 sing N N 300 VAL CB CG2 sing N N 301 VAL CB HB sing N N 302 VAL CG1 HG11 sing N N 303 VAL CG1 HG12 sing N N 304 VAL CG1 HG13 sing N N 305 VAL CG2 HG21 sing N N 306 VAL CG2 HG22 sing N N 307 VAL CG2 HG23 sing N N 308 VAL OXT HXT sing N N 309 # _atom_sites.entry_id 5AI2 _atom_sites.fract_transf_matrix[1][1] 0.029036 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029291 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022841 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD D H N O S # loop_