HEADER TRANSCRIPTION 16-FEB-15 5AIP TITLE CRYSTAL STRUCTURE OF NADR IN COMPLEX WITH 4-HYDROXYPHENYLACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, MARR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NEISSERIAL ADHESIN A REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_COMMON: MENB; SOURCE 4 ORGANISM_TAXID: 491; SOURCE 5 STRAIN: MC58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: T1R; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CELL ADHESION, VACCINE, MENINGITIS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.LIGUORI,E.MALITO,M.J.BOTTOMLEY REVDAT 4 10-JAN-24 5AIP 1 REMARK LINK REVDAT 3 23-AUG-17 5AIP 1 REMARK REVDAT 2 11-MAY-16 5AIP 1 JRNL REVDAT 1 02-MAR-16 5AIP 0 JRNL AUTH A.LIGUORI,E.MALITO,P.LO SURDO,L.FAGNOCCHI,F.CANTINI, JRNL AUTH 2 A.F.HAAG,S.BRIER,M.PIZZA,I.DELANY,M.J.BOTTOMLEY JRNL TITL MOLECULAR BASIS OF LIGAND-DEPENDENT REGULATION OF NADR, THE JRNL TITL 2 TRANSCRIPTIONAL REPRESSOR OF MENINGOCOCCAL VIRULENCE FACTOR JRNL TITL 3 NADA. JRNL REF PLOS PATHOG. V. 12 5557 2016 JRNL REFN ISSN 1553-7366 JRNL PMID 27105075 JRNL DOI 10.1371/JOURNAL.PPAT.1005557 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2028 - 3.6504 1.00 3072 151 0.1925 0.2317 REMARK 3 2 3.6504 - 2.8977 1.00 2897 134 0.2177 0.2934 REMARK 3 3 2.8977 - 2.5315 1.00 2871 156 0.2260 0.2657 REMARK 3 4 2.5315 - 2.3001 1.00 2848 144 0.2236 0.2885 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2238 REMARK 3 ANGLE : 1.085 3014 REMARK 3 CHIRALITY : 0.046 356 REMARK 3 PLANARITY : 0.006 391 REMARK 3 DIHEDRAL : 12.596 880 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8105 17.4778 25.8242 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.2445 REMARK 3 T33: 0.2922 T12: -0.0136 REMARK 3 T13: 0.0090 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 1.2439 L22: 2.9639 REMARK 3 L33: 8.8391 L12: 0.2954 REMARK 3 L13: -0.1215 L23: -4.9001 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: -0.0867 S13: 0.0578 REMARK 3 S21: -0.0660 S22: -0.0841 S23: -0.1370 REMARK 3 S31: 0.2676 S32: 0.5428 S33: 0.0105 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0047 9.0468 36.8705 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.1780 REMARK 3 T33: 0.2868 T12: -0.0258 REMARK 3 T13: 0.0256 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 3.1510 L22: 4.1778 REMARK 3 L33: 3.8684 L12: 1.2430 REMARK 3 L13: -1.6673 L23: 1.2193 REMARK 3 S TENSOR REMARK 3 S11: -0.1088 S12: 0.3435 S13: -0.3857 REMARK 3 S21: 0.0832 S22: -0.0276 S23: 0.0212 REMARK 3 S31: 0.1776 S32: -0.2443 S33: 0.0472 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5672 7.7785 41.5195 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.4319 REMARK 3 T33: 0.3857 T12: -0.0343 REMARK 3 T13: 0.0100 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 3.5865 L22: 1.3613 REMARK 3 L33: 1.7366 L12: -0.5902 REMARK 3 L13: 0.9669 L23: -0.8553 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: 1.0292 S13: -0.6271 REMARK 3 S21: -0.1354 S22: -0.2532 S23: 0.4293 REMARK 3 S31: 0.3446 S32: -0.2119 S33: 0.1893 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9928 15.3814 45.5067 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1121 REMARK 3 T33: 0.1389 T12: 0.0219 REMARK 3 T13: -0.0417 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 3.3507 L22: 1.1787 REMARK 3 L33: 1.6695 L12: 0.2165 REMARK 3 L13: 0.1855 L23: 0.0755 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: -0.3724 S13: -0.3940 REMARK 3 S21: 0.1012 S22: -0.0483 S23: 0.0821 REMARK 3 S31: 0.0275 S32: 0.0900 S33: -0.0747 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7390 29.8668 33.8355 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.1742 REMARK 3 T33: 0.2360 T12: 0.0550 REMARK 3 T13: 0.0595 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 7.7005 L22: 8.3976 REMARK 3 L33: 8.0792 L12: 2.0710 REMARK 3 L13: 2.6728 L23: 0.1005 REMARK 3 S TENSOR REMARK 3 S11: -0.2996 S12: -0.6275 S13: -0.2006 REMARK 3 S21: 0.7881 S22: -0.0652 S23: -0.0076 REMARK 3 S31: -0.7226 S32: -0.5822 S33: 0.4372 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7237 17.1211 17.5914 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: -0.0023 REMARK 3 T33: 0.1712 T12: -0.0929 REMARK 3 T13: 0.0039 T23: -0.1302 REMARK 3 L TENSOR REMARK 3 L11: 0.3772 L22: 0.6588 REMARK 3 L33: 1.4765 L12: -0.4344 REMARK 3 L13: -0.2845 L23: 0.0986 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: 0.1153 S13: -0.1882 REMARK 3 S21: -0.2096 S22: -0.0970 S23: 0.0622 REMARK 3 S31: 0.3001 S32: -0.2166 S33: 0.0087 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7002 11.4257 17.8038 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.3983 REMARK 3 T33: 0.2052 T12: -0.0162 REMARK 3 T13: 0.0050 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 3.8284 L22: 2.7618 REMARK 3 L33: 3.8003 L12: 1.4203 REMARK 3 L13: -1.5426 L23: -0.1612 REMARK 3 S TENSOR REMARK 3 S11: -0.3273 S12: -0.3849 S13: -0.1196 REMARK 3 S21: -0.0795 S22: 0.0387 S23: -0.2521 REMARK 3 S31: -0.0604 S32: 1.2986 S33: 0.1841 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6251 3.8509 11.5856 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.1237 REMARK 3 T33: 0.1295 T12: 0.0004 REMARK 3 T13: -0.1057 T23: -0.0980 REMARK 3 L TENSOR REMARK 3 L11: 1.8435 L22: 2.1940 REMARK 3 L33: 2.9292 L12: -0.0896 REMARK 3 L13: 0.2682 L23: -0.4586 REMARK 3 S TENSOR REMARK 3 S11: 0.4073 S12: -0.1198 S13: -0.3022 REMARK 3 S21: 0.1958 S22: 0.1911 S23: -0.3231 REMARK 3 S31: 0.6476 S32: 0.4062 S33: 0.6251 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5412 7.7064 6.4175 REMARK 3 T TENSOR REMARK 3 T11: 0.1964 T22: 0.3832 REMARK 3 T33: 0.2511 T12: 0.0353 REMARK 3 T13: 0.0387 T23: -0.1896 REMARK 3 L TENSOR REMARK 3 L11: 3.3203 L22: 7.8284 REMARK 3 L33: 6.9939 L12: 3.6353 REMARK 3 L13: -2.0054 L23: -2.6506 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: -0.2208 S13: -0.3909 REMARK 3 S21: 0.1612 S22: -0.0593 S23: -1.3657 REMARK 3 S31: 0.2448 S32: 1.6120 S33: -0.7157 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7999 25.2612 9.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.1218 REMARK 3 T33: 0.1506 T12: -0.1164 REMARK 3 T13: -0.0978 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 4.9804 L22: 5.2759 REMARK 3 L33: 5.7430 L12: -3.9613 REMARK 3 L13: -4.2184 L23: 4.3736 REMARK 3 S TENSOR REMARK 3 S11: 0.2127 S12: 0.6355 S13: 0.4225 REMARK 3 S21: -0.5698 S22: -0.0586 S23: -0.1563 REMARK 3 S31: -0.1513 S32: -0.6208 S33: 0.0669 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7000 29.2982 28.3489 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.0660 REMARK 3 T33: 0.1616 T12: -0.1090 REMARK 3 T13: 0.0482 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 3.2767 L22: 3.3337 REMARK 3 L33: 2.1087 L12: -1.1375 REMARK 3 L13: 0.9335 L23: -1.1308 REMARK 3 S TENSOR REMARK 3 S11: -0.2892 S12: 0.3928 S13: -0.2281 REMARK 3 S21: 0.5593 S22: -0.1168 S23: -0.1080 REMARK 3 S31: -0.2155 S32: 0.3671 S33: 0.0958 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290063064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 23.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2FBI REMARK 200 REMARK 200 REMARK: MR-SAD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: H4 MORPHEUS SCREEN (MOLECULAR M AMINO REMARK 280 ACIDS, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.90500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.65500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.85750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.65500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.95250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.65500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.65500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.85750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.65500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.65500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.95250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.90500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2012 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 142 REMARK 465 ALA A 143 REMARK 465 LEU A 144 REMARK 465 ASN A 145 REMARK 465 SER A 146 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 SER B 5 REMARK 465 LYS B 6 REMARK 465 HIS B 7 REMARK 465 ALA B 8 REMARK 465 SER B 86 REMARK 465 ASN B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 ARG B 90 REMARK 465 SER B 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 43 OG SER B 9 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 99 NH1 ARG B 82 2655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PRO B 85 C - N - CD ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4HP B 1146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AIQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LIGAND-FREE NADR DBREF 5AIP A 1 146 UNP Q7DD70 Q7DD70_NEIMB 1 146 DBREF 5AIP B 1 146 UNP Q7DD70 Q7DD70_NEIMB 1 146 SEQRES 1 A 146 MSE PRO THR GLN SER LYS HIS ALA SER ILE ASN ILE GLY SEQRES 2 A 146 LEU ILE GLN ALA ARG GLU ALA LEU MSE THR GLN PHE ARG SEQRES 3 A 146 PRO ILE LEU ASN GLN ALA ASN ILE THR ASP GLN GLN TRP SEQRES 4 A 146 ARG ILE ILE ARG LEU LEU ALA GLU ASN GLY THR LEU ASP SEQRES 5 A 146 PHE GLN ASP LEU ALA ASN GLN ALA CYS ILE LEU ARG PRO SEQRES 6 A 146 SER LEU THR GLY ILE LEU THR ARG LEU GLU LYS ALA GLY SEQRES 7 A 146 LEU VAL VAL ARG LEU LYS PRO SER ASN ASP GLN ARG ARG SEQRES 8 A 146 VAL PHE LEU LYS LEU THR ALA GLU GLY GLU LYS LEU TYR SEQRES 9 A 146 GLU GLU ILE GLY GLU GLU VAL ASP GLU ARG TYR ASP ALA SEQRES 10 A 146 ILE GLU GLU VAL LEU GLY ARG GLU LYS MSE LEU LEU LEU SEQRES 11 A 146 LYS ASP LEU LEU ALA GLU LEU ALA LYS ILE GLU ASP ALA SEQRES 12 A 146 LEU ASN SER SEQRES 1 B 146 MSE PRO THR GLN SER LYS HIS ALA SER ILE ASN ILE GLY SEQRES 2 B 146 LEU ILE GLN ALA ARG GLU ALA LEU MSE THR GLN PHE ARG SEQRES 3 B 146 PRO ILE LEU ASN GLN ALA ASN ILE THR ASP GLN GLN TRP SEQRES 4 B 146 ARG ILE ILE ARG LEU LEU ALA GLU ASN GLY THR LEU ASP SEQRES 5 B 146 PHE GLN ASP LEU ALA ASN GLN ALA CYS ILE LEU ARG PRO SEQRES 6 B 146 SER LEU THR GLY ILE LEU THR ARG LEU GLU LYS ALA GLY SEQRES 7 B 146 LEU VAL VAL ARG LEU LYS PRO SER ASN ASP GLN ARG ARG SEQRES 8 B 146 VAL PHE LEU LYS LEU THR ALA GLU GLY GLU LYS LEU TYR SEQRES 9 B 146 GLU GLU ILE GLY GLU GLU VAL ASP GLU ARG TYR ASP ALA SEQRES 10 B 146 ILE GLU GLU VAL LEU GLY ARG GLU LYS MSE LEU LEU LEU SEQRES 11 B 146 LYS ASP LEU LEU ALA GLU LEU ALA LYS ILE GLU ASP ALA SEQRES 12 B 146 LEU ASN SER MODRES 5AIP MSE A 1 MET SELENOMETHIONINE MODRES 5AIP MSE A 22 MET SELENOMETHIONINE MODRES 5AIP MSE A 127 MET SELENOMETHIONINE MODRES 5AIP MSE B 22 MET SELENOMETHIONINE MODRES 5AIP MSE B 127 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 22 8 HET MSE A 127 8 HET MSE B 22 8 HET MSE B 127 8 HET 4HP B1146 11 HETNAM MSE SELENOMETHIONINE HETNAM 4HP 4-HYDROXYPHENYLACETATE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 4HP C8 H8 O3 FORMUL 4 HOH *45(H2 O) HELIX 1 1 SER A 9 ALA A 32 1 24 HELIX 2 2 THR A 35 GLY A 49 1 15 HELIX 3 3 PHE A 53 CYS A 61 1 9 HELIX 4 4 LEU A 63 ALA A 77 1 15 HELIX 5 5 THR A 97 GLY A 123 1 27 HELIX 6 6 GLY A 123 LYS A 139 1 17 HELIX 7 7 SER B 9 ALA B 32 1 24 HELIX 8 8 THR B 35 GLY B 49 1 15 HELIX 9 9 PHE B 53 CYS B 61 1 9 HELIX 10 10 LEU B 63 ALA B 77 1 15 HELIX 11 11 THR B 97 GLY B 123 1 27 HELIX 12 12 GLY B 123 ASN B 145 1 23 SHEET 1 AA 3 LEU A 51 ASP A 52 0 SHEET 2 AA 3 PHE A 93 LEU A 96 -1 O LEU A 94 N LEU A 51 SHEET 3 AA 3 VAL A 80 LEU A 83 -1 O VAL A 81 N LYS A 95 SHEET 1 BA 3 LEU B 51 ASP B 52 0 SHEET 2 BA 3 PHE B 93 LEU B 96 -1 O LEU B 94 N LEU B 51 SHEET 3 BA 3 VAL B 80 ARG B 82 -1 O VAL B 81 N LYS B 95 LINK C MSE A 1 N PRO A 2 1555 1555 1.34 LINK C LEU A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N THR A 23 1555 1555 1.33 LINK C LYS A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N LEU A 128 1555 1555 1.34 LINK C LEU B 21 N MSE B 22 1555 1555 1.32 LINK C MSE B 22 N THR B 23 1555 1555 1.33 LINK C LYS B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N LEU B 128 1555 1555 1.33 CISPEP 1 LYS B 84 PRO B 85 0 -1.87 SITE 1 AC1 10 SER A 9 ASN A 11 HOH A2003 MSE B 22 SITE 2 AC1 10 PHE B 25 LEU B 29 ASP B 36 TRP B 39 SITE 3 AC1 10 ARG B 43 TYR B 115 CRYST1 75.310 75.310 91.810 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010892 0.00000 MTRIX1 1 -0.927500 0.369100 0.060100 57.15390 1 MTRIX2 1 0.359800 0.837200 0.411800 -20.59190 1 MTRIX3 1 0.101700 0.403600 -0.909300 40.84220 1 HETATM 1 N MSE A 1 48.247 22.202 2.820 1.00 54.12 N ANISOU 1 N MSE A 1 5904 8789 5869 1915 1831 729 N HETATM 2 CA MSE A 1 47.276 22.584 3.845 1.00 51.38 C ANISOU 2 CA MSE A 1 5483 8264 5775 1521 1652 536 C HETATM 3 C MSE A 1 46.124 23.394 3.284 1.00 47.05 C ANISOU 3 C MSE A 1 5015 7472 5389 1091 1472 381 C HETATM 4 O MSE A 1 46.336 24.334 2.514 1.00 49.74 O ANISOU 4 O MSE A 1 5110 8002 5788 964 1475 506 O HETATM 5 CB MSE A 1 47.940 23.397 4.954 1.00 52.90 C ANISOU 5 CB MSE A 1 5155 8739 6207 1271 1514 694 C HETATM 6 CG MSE A 1 48.929 22.633 5.801 1.00 56.52 C ANISOU 6 CG MSE A 1 5562 9337 6577 1521 1535 836 C HETATM 7 SE MSE A 1 49.287 23.626 7.430 1.00 92.64 SE ANISOU 7 SE MSE A 1 9702 14074 11422 1031 1268 917 SE HETATM 8 CE MSE A 1 47.471 23.693 8.160 1.00 56.04 C ANISOU 8 CE MSE A 1 5279 9017 6997 743 1185 534 C