HEADER TRANSCRIPTION 16-FEB-15 5AIQ TITLE CRYSTAL STRUCTURE OF LIGAND-FREE NADR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, MARR FAMILY; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NEISSERIAL ADHESIN A REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_COMMON: MENB; SOURCE 4 ORGANISM_TAXID: 491; SOURCE 5 STRAIN: MC58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: T1R; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CELL ADHESION, VACCINE, MENINGITIS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.LIGUORI,E.MALITO,M.J.BOTTOMLEY REVDAT 4 10-JAN-24 5AIQ 1 REMARK REVDAT 3 23-AUG-17 5AIQ 1 REMARK REVDAT 2 11-MAY-16 5AIQ 1 JRNL REVDAT 1 02-MAR-16 5AIQ 0 JRNL AUTH A.LIGUORI,E.MALITO,P.LO SURDO,L.FAGNOCCHI,F.CANTINI, JRNL AUTH 2 A.F.HAAG,S.BRIER,M.PIZZA,I.DELANY,M.J.BOTTOMLEY JRNL TITL MOLECULAR BASIS OF LIGAND-DEPENDENT REGULATION OF NADR, THE JRNL TITL 2 TRANSCRIPTIONAL REPRESSOR OF MENINGOCOCCAL VIRULENCE FACTOR JRNL TITL 3 NADA. JRNL REF PLOS PATHOG. V. 12 5557 2016 JRNL REFN ISSN 1553-7366 JRNL PMID 27105075 JRNL DOI 10.1371/JOURNAL.PPAT.1005557 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2358 - 4.9341 1.00 3004 158 0.2046 0.2683 REMARK 3 2 4.9341 - 3.9169 1.00 2821 148 0.1808 0.2140 REMARK 3 3 3.9169 - 3.4220 1.00 2788 147 0.2132 0.2810 REMARK 3 4 3.4220 - 3.1091 1.00 2740 144 0.2427 0.3115 REMARK 3 5 3.1091 - 2.8863 1.00 2713 143 0.2830 0.3157 REMARK 3 6 2.8863 - 2.7162 1.00 2748 144 0.2811 0.3280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4173 REMARK 3 ANGLE : 0.823 5621 REMARK 3 CHIRALITY : 0.029 680 REMARK 3 PLANARITY : 0.003 723 REMARK 3 DIHEDRAL : 10.991 1615 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8829 10.6026 -24.5755 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: 0.2726 REMARK 3 T33: 0.3348 T12: 0.0356 REMARK 3 T13: 0.0208 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 3.6382 L22: 2.3115 REMARK 3 L33: 1.0730 L12: -0.2855 REMARK 3 L13: -2.1933 L23: 0.1663 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: 0.1750 S13: -0.1272 REMARK 3 S21: 0.2431 S22: 0.1708 S23: 0.1226 REMARK 3 S31: 0.1127 S32: -0.0897 S33: -0.2031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0635 22.2399 -24.2639 REMARK 3 T TENSOR REMARK 3 T11: 0.5170 T22: 0.4366 REMARK 3 T33: 0.9193 T12: 0.0614 REMARK 3 T13: 0.1188 T23: 0.2032 REMARK 3 L TENSOR REMARK 3 L11: 7.9893 L22: 3.7192 REMARK 3 L33: 0.3458 L12: 1.9945 REMARK 3 L13: -1.1305 L23: -0.9496 REMARK 3 S TENSOR REMARK 3 S11: 0.3868 S12: 1.0778 S13: 2.5158 REMARK 3 S21: 0.2562 S22: 0.2985 S23: 1.5238 REMARK 3 S31: -0.6223 S32: -0.2759 S33: -0.4839 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8971 14.6303 -15.7157 REMARK 3 T TENSOR REMARK 3 T11: 0.5516 T22: 0.3801 REMARK 3 T33: 0.2597 T12: 0.0311 REMARK 3 T13: 0.1423 T23: -0.0932 REMARK 3 L TENSOR REMARK 3 L11: 2.5647 L22: 3.5894 REMARK 3 L33: 1.4625 L12: 1.8805 REMARK 3 L13: 0.9636 L23: -0.9644 REMARK 3 S TENSOR REMARK 3 S11: 0.3495 S12: -0.5250 S13: -0.0018 REMARK 3 S21: 0.6927 S22: -0.1749 S23: 0.2306 REMARK 3 S31: -0.0523 S32: -0.0407 S33: -0.1383 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9722 20.8346 -35.5973 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2543 REMARK 3 T33: 0.2967 T12: -0.0280 REMARK 3 T13: 0.0274 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.2566 L22: 2.5448 REMARK 3 L33: 6.3750 L12: -0.6434 REMARK 3 L13: -2.8629 L23: 1.7091 REMARK 3 S TENSOR REMARK 3 S11: 0.1235 S12: 0.0129 S13: 0.2667 REMARK 3 S21: -0.0662 S22: -0.0031 S23: 0.1039 REMARK 3 S31: -0.0209 S32: 0.0319 S33: -0.1208 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3745 8.4505 -44.4193 REMARK 3 T TENSOR REMARK 3 T11: 0.5101 T22: 0.2128 REMARK 3 T33: 0.2815 T12: 0.0334 REMARK 3 T13: 0.0559 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 5.8277 L22: 2.9975 REMARK 3 L33: 6.1026 L12: 3.2288 REMARK 3 L13: -1.1624 L23: 1.2598 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: 0.2207 S13: -0.1465 REMARK 3 S21: -0.3938 S22: -0.1105 S23: -0.4177 REMARK 3 S31: 0.8476 S32: -0.2984 S33: 0.0666 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7688 8.6781 -52.1427 REMARK 3 T TENSOR REMARK 3 T11: 0.8171 T22: 0.4971 REMARK 3 T33: 0.2692 T12: 0.0140 REMARK 3 T13: -0.1002 T23: 0.1480 REMARK 3 L TENSOR REMARK 3 L11: 4.0018 L22: 5.2078 REMARK 3 L33: 1.3899 L12: -1.2933 REMARK 3 L13: -0.2452 L23: -1.3504 REMARK 3 S TENSOR REMARK 3 S11: -0.6549 S12: -0.5690 S13: -0.2332 REMARK 3 S21: 0.2297 S22: 1.4650 S23: -0.2370 REMARK 3 S31: 1.5897 S32: -0.4636 S33: -0.4919 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6539 23.5558 -40.2456 REMARK 3 T TENSOR REMARK 3 T11: 0.4056 T22: 0.3455 REMARK 3 T33: 0.3062 T12: 0.0696 REMARK 3 T13: 0.0220 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 1.4051 L22: 4.4191 REMARK 3 L33: 5.1871 L12: 0.8088 REMARK 3 L13: -1.2681 L23: 3.4649 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: 0.0723 S13: 0.2168 REMARK 3 S21: -0.3088 S22: 0.2781 S23: -0.2853 REMARK 3 S31: -0.1831 S32: 0.8300 S33: -0.2320 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0530 11.8464 -22.4617 REMARK 3 T TENSOR REMARK 3 T11: 0.3552 T22: 0.3651 REMARK 3 T33: 0.3342 T12: 0.0221 REMARK 3 T13: 0.0288 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 3.0703 L22: 6.5969 REMARK 3 L33: 7.2411 L12: 1.6080 REMARK 3 L13: -0.6207 L23: -1.3660 REMARK 3 S TENSOR REMARK 3 S11: -0.1730 S12: -0.4002 S13: -0.4116 REMARK 3 S21: 0.7639 S22: 0.3525 S23: -0.4656 REMARK 3 S31: 0.5367 S32: 0.9831 S33: -0.1824 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 5 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.6871 -8.2933 -4.4493 REMARK 3 T TENSOR REMARK 3 T11: 0.3152 T22: 0.5486 REMARK 3 T33: 0.2946 T12: 0.0071 REMARK 3 T13: 0.0504 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 3.0917 L22: 5.3579 REMARK 3 L33: 2.5746 L12: -0.1254 REMARK 3 L13: 0.2320 L23: 0.2897 REMARK 3 S TENSOR REMARK 3 S11: -0.2887 S12: -0.6433 S13: 0.2087 REMARK 3 S21: 0.4022 S22: 0.4907 S23: 0.2193 REMARK 3 S31: -0.0611 S32: 0.2389 S33: -0.0289 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 32 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.2107 -4.0522 -19.6495 REMARK 3 T TENSOR REMARK 3 T11: 0.3522 T22: 0.5960 REMARK 3 T33: 0.4368 T12: -0.0446 REMARK 3 T13: 0.0958 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 7.7597 L22: 6.7671 REMARK 3 L33: 9.1688 L12: -0.1597 REMARK 3 L13: 3.2683 L23: -0.9181 REMARK 3 S TENSOR REMARK 3 S11: -0.0901 S12: 0.7154 S13: 0.1184 REMARK 3 S21: 0.1746 S22: 0.4004 S23: 1.0694 REMARK 3 S31: 0.2524 S32: -0.6587 S33: -0.3196 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 64 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.3156 -1.3300 -27.5808 REMARK 3 T TENSOR REMARK 3 T11: 0.5208 T22: 0.8298 REMARK 3 T33: 0.5163 T12: -0.0250 REMARK 3 T13: 0.0152 T23: 0.1246 REMARK 3 L TENSOR REMARK 3 L11: 2.4685 L22: 2.5156 REMARK 3 L33: 9.0546 L12: -0.5766 REMARK 3 L13: -0.5407 L23: 1.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.3726 S12: 1.7069 S13: 0.6056 REMARK 3 S21: -1.2441 S22: 0.0493 S23: 0.8073 REMARK 3 S31: -0.0048 S32: -0.5731 S33: -0.8576 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 77 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.5243 -5.8837 -31.6579 REMARK 3 T TENSOR REMARK 3 T11: 0.4275 T22: 0.7065 REMARK 3 T33: 0.5672 T12: -0.1571 REMARK 3 T13: -0.0580 T23: -0.3683 REMARK 3 L TENSOR REMARK 3 L11: 6.7697 L22: 3.0240 REMARK 3 L33: 8.5085 L12: 0.2739 REMARK 3 L13: -4.3478 L23: -4.3376 REMARK 3 S TENSOR REMARK 3 S11: 0.9814 S12: 1.7318 S13: 0.1769 REMARK 3 S21: -1.4190 S22: 0.8855 S23: -0.7640 REMARK 3 S31: 1.0554 S32: 0.2823 S33: -0.8968 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 92 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.9691 -3.7765 -28.5114 REMARK 3 T TENSOR REMARK 3 T11: 0.7012 T22: 0.7504 REMARK 3 T33: 0.7990 T12: -0.2040 REMARK 3 T13: -0.1957 T23: 0.1526 REMARK 3 L TENSOR REMARK 3 L11: 4.7619 L22: 4.2660 REMARK 3 L33: 8.9074 L12: -4.3533 REMARK 3 L13: 3.4647 L23: -4.4348 REMARK 3 S TENSOR REMARK 3 S11: 0.9824 S12: 1.5344 S13: -0.3193 REMARK 3 S21: -0.5840 S22: -1.2234 S23: 1.2102 REMARK 3 S31: 0.6112 S32: 0.6162 S33: 0.4198 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 98 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.7689 -19.3560 -14.2031 REMARK 3 T TENSOR REMARK 3 T11: 0.7074 T22: 0.6970 REMARK 3 T33: 0.9211 T12: -0.2779 REMARK 3 T13: 0.1422 T23: -0.1577 REMARK 3 L TENSOR REMARK 3 L11: 3.8242 L22: 0.5969 REMARK 3 L33: 2.3407 L12: -0.8538 REMARK 3 L13: 2.0925 L23: -0.2089 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.7260 S13: 0.6922 REMARK 3 S21: 0.1200 S22: -1.0062 S23: 0.1910 REMARK 3 S31: 1.2537 S32: -1.1974 S33: 0.8937 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 123 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.2534 -6.0917 -0.2850 REMARK 3 T TENSOR REMARK 3 T11: 0.4265 T22: 0.8195 REMARK 3 T33: 0.2919 T12: 0.0902 REMARK 3 T13: 0.0213 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 6.5824 L22: 9.4205 REMARK 3 L33: 4.2572 L12: -4.0051 REMARK 3 L13: 1.6679 L23: -2.7725 REMARK 3 S TENSOR REMARK 3 S11: 0.5140 S12: 0.6287 S13: -0.4191 REMARK 3 S21: -0.0059 S22: -0.3734 S23: 1.2012 REMARK 3 S31: -0.3781 S32: -0.8592 S33: -0.0982 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.0209 5.0376 -5.4479 REMARK 3 T TENSOR REMARK 3 T11: 0.7142 T22: 0.6350 REMARK 3 T33: 0.6041 T12: 0.2112 REMARK 3 T13: 0.2541 T23: 0.0946 REMARK 3 L TENSOR REMARK 3 L11: 7.4262 L22: 7.9509 REMARK 3 L33: 3.7895 L12: 5.8342 REMARK 3 L13: 1.0257 L23: -3.1619 REMARK 3 S TENSOR REMARK 3 S11: 0.4706 S12: 0.8709 S13: 0.8183 REMARK 3 S21: 1.6067 S22: 0.0302 S23: -0.0486 REMARK 3 S31: -0.6845 S32: -0.4144 S33: -0.3163 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 33 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0243 -1.0511 -0.6935 REMARK 3 T TENSOR REMARK 3 T11: 0.5263 T22: 0.3688 REMARK 3 T33: 0.3406 T12: -0.0695 REMARK 3 T13: -0.1071 T23: 0.1015 REMARK 3 L TENSOR REMARK 3 L11: 8.1747 L22: 7.2250 REMARK 3 L33: 8.2667 L12: 1.5549 REMARK 3 L13: -1.7649 L23: 6.8661 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: -0.2258 S13: 0.2110 REMARK 3 S21: -0.1847 S22: 0.0115 S23: -0.0729 REMARK 3 S31: -0.2411 S32: 0.3227 S33: -0.1124 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 77 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0853 1.1542 6.6458 REMARK 3 T TENSOR REMARK 3 T11: 0.6935 T22: 0.4876 REMARK 3 T33: 0.3438 T12: -0.1162 REMARK 3 T13: -0.0153 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 5.2461 L22: 1.8574 REMARK 3 L33: 1.0525 L12: -0.1568 REMARK 3 L13: -2.0022 L23: -0.3955 REMARK 3 S TENSOR REMARK 3 S11: 0.4895 S12: -0.2672 S13: 0.8225 REMARK 3 S21: 0.6574 S22: -0.1738 S23: -0.0194 REMARK 3 S31: -0.4349 S32: 0.0090 S33: -0.3839 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290063065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5AIP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 % PEG 3350, 0.13 M DI-AMMONIUM REMARK 280 HYDROGEN CITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.94000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.73500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 190.41000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.73500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.47000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.73500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.73500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 190.41000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.73500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.73500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.47000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 126.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 HIS A 7 REMARK 465 LYS A 84 REMARK 465 PRO A 85 REMARK 465 SER A 86 REMARK 465 ASN A 87 REMARK 465 ASP A 88 REMARK 465 GLN A 89 REMARK 465 ARG A 90 REMARK 465 ARG A 91 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 SER B 5 REMARK 465 LYS B 6 REMARK 465 HIS B 7 REMARK 465 LYS B 84 REMARK 465 PRO B 85 REMARK 465 SER B 86 REMARK 465 ASN B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 ARG B 90 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 GLN C 4 REMARK 465 LYS C 84 REMARK 465 PRO C 85 REMARK 465 SER C 86 REMARK 465 ASN C 87 REMARK 465 ASP C 88 REMARK 465 GLN C 89 REMARK 465 ARG C 90 REMARK 465 ARG C 91 REMARK 465 ALA C 143 REMARK 465 LEU C 144 REMARK 465 ASN C 145 REMARK 465 SER C 146 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 THR D 3 REMARK 465 GLN D 4 REMARK 465 SER D 5 REMARK 465 LYS D 6 REMARK 465 HIS D 7 REMARK 465 ALA D 8 REMARK 465 LYS D 84 REMARK 465 PRO D 85 REMARK 465 SER D 86 REMARK 465 ASN D 87 REMARK 465 ASP D 88 REMARK 465 GLN D 89 REMARK 465 ARG D 90 REMARK 465 ARG D 91 REMARK 465 ASN D 145 REMARK 465 SER D 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 36 O HOH A 2003 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 142 -37.76 -31.55 REMARK 500 ASN B 33 44.00 27.66 REMARK 500 LYS C 6 -60.27 -108.46 REMARK 500 ASN C 33 38.73 -92.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AIP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NADR IN COMPLEX WITH 4- HYDROXYPHENYLACETATE DBREF 5AIQ A 1 146 UNP Q7DD70 Q7DD70_NEIMB 1 146 DBREF 5AIQ B 1 146 UNP Q7DD70 Q7DD70_NEIMB 1 146 DBREF 5AIQ C 1 146 UNP Q7DD70 Q7DD70_NEIMB 1 146 DBREF 5AIQ D 1 146 UNP Q7DD70 Q7DD70_NEIMB 1 146 SEQRES 1 A 146 MET PRO THR GLN SER LYS HIS ALA SER ILE ASN ILE GLY SEQRES 2 A 146 LEU ILE GLN ALA ARG GLU ALA LEU MET THR GLN PHE ARG SEQRES 3 A 146 PRO ILE LEU ASN GLN ALA ASN ILE THR ASP GLN GLN TRP SEQRES 4 A 146 ARG ILE ILE ARG LEU LEU ALA GLU ASN GLY THR LEU ASP SEQRES 5 A 146 PHE GLN ASP LEU ALA ASN GLN ALA CYS ILE LEU ARG PRO SEQRES 6 A 146 SER LEU THR GLY ILE LEU THR ARG LEU GLU LYS ALA GLY SEQRES 7 A 146 LEU VAL VAL ARG LEU LYS PRO SER ASN ASP GLN ARG ARG SEQRES 8 A 146 VAL PHE LEU LYS LEU THR ALA GLU GLY GLU LYS LEU TYR SEQRES 9 A 146 GLU GLU ILE GLY GLU GLU VAL ASP GLU ARG TYR ASP ALA SEQRES 10 A 146 ILE GLU GLU VAL LEU GLY ARG GLU LYS MET LEU LEU LEU SEQRES 11 A 146 LYS ASP LEU LEU ALA GLU LEU ALA LYS ILE GLU ASP ALA SEQRES 12 A 146 LEU ASN SER SEQRES 1 B 146 MET PRO THR GLN SER LYS HIS ALA SER ILE ASN ILE GLY SEQRES 2 B 146 LEU ILE GLN ALA ARG GLU ALA LEU MET THR GLN PHE ARG SEQRES 3 B 146 PRO ILE LEU ASN GLN ALA ASN ILE THR ASP GLN GLN TRP SEQRES 4 B 146 ARG ILE ILE ARG LEU LEU ALA GLU ASN GLY THR LEU ASP SEQRES 5 B 146 PHE GLN ASP LEU ALA ASN GLN ALA CYS ILE LEU ARG PRO SEQRES 6 B 146 SER LEU THR GLY ILE LEU THR ARG LEU GLU LYS ALA GLY SEQRES 7 B 146 LEU VAL VAL ARG LEU LYS PRO SER ASN ASP GLN ARG ARG SEQRES 8 B 146 VAL PHE LEU LYS LEU THR ALA GLU GLY GLU LYS LEU TYR SEQRES 9 B 146 GLU GLU ILE GLY GLU GLU VAL ASP GLU ARG TYR ASP ALA SEQRES 10 B 146 ILE GLU GLU VAL LEU GLY ARG GLU LYS MET LEU LEU LEU SEQRES 11 B 146 LYS ASP LEU LEU ALA GLU LEU ALA LYS ILE GLU ASP ALA SEQRES 12 B 146 LEU ASN SER SEQRES 1 C 146 MET PRO THR GLN SER LYS HIS ALA SER ILE ASN ILE GLY SEQRES 2 C 146 LEU ILE GLN ALA ARG GLU ALA LEU MET THR GLN PHE ARG SEQRES 3 C 146 PRO ILE LEU ASN GLN ALA ASN ILE THR ASP GLN GLN TRP SEQRES 4 C 146 ARG ILE ILE ARG LEU LEU ALA GLU ASN GLY THR LEU ASP SEQRES 5 C 146 PHE GLN ASP LEU ALA ASN GLN ALA CYS ILE LEU ARG PRO SEQRES 6 C 146 SER LEU THR GLY ILE LEU THR ARG LEU GLU LYS ALA GLY SEQRES 7 C 146 LEU VAL VAL ARG LEU LYS PRO SER ASN ASP GLN ARG ARG SEQRES 8 C 146 VAL PHE LEU LYS LEU THR ALA GLU GLY GLU LYS LEU TYR SEQRES 9 C 146 GLU GLU ILE GLY GLU GLU VAL ASP GLU ARG TYR ASP ALA SEQRES 10 C 146 ILE GLU GLU VAL LEU GLY ARG GLU LYS MET LEU LEU LEU SEQRES 11 C 146 LYS ASP LEU LEU ALA GLU LEU ALA LYS ILE GLU ASP ALA SEQRES 12 C 146 LEU ASN SER SEQRES 1 D 146 MET PRO THR GLN SER LYS HIS ALA SER ILE ASN ILE GLY SEQRES 2 D 146 LEU ILE GLN ALA ARG GLU ALA LEU MET THR GLN PHE ARG SEQRES 3 D 146 PRO ILE LEU ASN GLN ALA ASN ILE THR ASP GLN GLN TRP SEQRES 4 D 146 ARG ILE ILE ARG LEU LEU ALA GLU ASN GLY THR LEU ASP SEQRES 5 D 146 PHE GLN ASP LEU ALA ASN GLN ALA CYS ILE LEU ARG PRO SEQRES 6 D 146 SER LEU THR GLY ILE LEU THR ARG LEU GLU LYS ALA GLY SEQRES 7 D 146 LEU VAL VAL ARG LEU LYS PRO SER ASN ASP GLN ARG ARG SEQRES 8 D 146 VAL PHE LEU LYS LEU THR ALA GLU GLY GLU LYS LEU TYR SEQRES 9 D 146 GLU GLU ILE GLY GLU GLU VAL ASP GLU ARG TYR ASP ALA SEQRES 10 D 146 ILE GLU GLU VAL LEU GLY ARG GLU LYS MET LEU LEU LEU SEQRES 11 D 146 LYS ASP LEU LEU ALA GLU LEU ALA LYS ILE GLU ASP ALA SEQRES 12 D 146 LEU ASN SER FORMUL 5 HOH *19(H2 O) HELIX 1 1 SER A 9 ALA A 32 1 24 HELIX 2 2 THR A 35 ASN A 48 1 14 HELIX 3 3 PHE A 53 CYS A 61 1 9 HELIX 4 4 LEU A 63 ALA A 77 1 15 HELIX 5 5 THR A 97 LEU A 122 1 26 HELIX 6 6 ARG A 124 LYS A 139 1 16 HELIX 7 7 SER B 9 ASN B 30 1 22 HELIX 8 8 GLN B 31 ASN B 33 5 3 HELIX 9 9 THR B 35 GLY B 49 1 15 HELIX 10 10 PHE B 53 CYS B 61 1 9 HELIX 11 11 LEU B 63 ALA B 77 1 15 HELIX 12 12 THR B 97 LEU B 122 1 26 HELIX 13 13 ARG B 124 ALA B 143 1 20 HELIX 14 14 SER C 9 ALA C 32 1 24 HELIX 15 15 THR C 35 ASN C 48 1 14 HELIX 16 16 PHE C 53 CYS C 61 1 9 HELIX 17 17 LEU C 63 ALA C 77 1 15 HELIX 18 18 THR C 97 LEU C 122 1 26 HELIX 19 19 ARG C 124 ILE C 140 1 17 HELIX 20 20 SER D 9 GLN D 24 1 16 HELIX 21 21 PHE D 25 ALA D 32 1 8 HELIX 22 22 THR D 35 ASN D 48 1 14 HELIX 23 23 PHE D 53 CYS D 61 1 9 HELIX 24 24 LEU D 63 ALA D 77 1 15 HELIX 25 25 THR D 97 LEU D 122 1 26 HELIX 26 26 ARG D 124 LYS D 139 1 16 HELIX 27 27 ILE D 140 ASP D 142 5 3 SHEET 1 AA 3 LEU A 51 ASP A 52 0 SHEET 2 AA 3 PHE A 93 LEU A 96 -1 O LEU A 94 N LEU A 51 SHEET 3 AA 3 VAL A 80 ARG A 82 -1 O VAL A 81 N LYS A 95 SHEET 1 BA 3 THR B 50 ASP B 52 0 SHEET 2 BA 3 PHE B 93 LEU B 96 -1 O LEU B 94 N LEU B 51 SHEET 3 BA 3 VAL B 80 ARG B 82 -1 O VAL B 81 N LYS B 95 SHEET 1 CA 3 THR C 50 ASP C 52 0 SHEET 2 CA 3 PHE C 93 LEU C 96 -1 O LEU C 94 N LEU C 51 SHEET 3 CA 3 VAL C 80 ARG C 82 -1 O VAL C 81 N LYS C 95 SHEET 1 DA 3 LEU D 51 ASP D 52 0 SHEET 2 DA 3 PHE D 93 LEU D 96 -1 O LEU D 94 N LEU D 51 SHEET 3 DA 3 VAL D 80 ARG D 82 -1 O VAL D 81 N LYS D 95 CRYST1 69.470 69.470 253.880 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014395 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003939 0.00000 MTRIX1 1 0.092100 0.055200 0.994200 11.44900 1 MTRIX2 1 0.080100 -0.995600 0.047800 34.59420 1 MTRIX3 1 0.992500 0.075200 -0.096100 -15.24570 1 MTRIX1 2 -0.017100 0.068500 0.997500 -11.08440 1 MTRIX2 2 -0.481000 0.874000 -0.068300 -1.59260 1 MTRIX3 2 -0.876500 -0.481000 0.018000 -65.67170 1 MTRIX1 3 0.938600 -0.342900 -0.038500 -56.36180 1 MTRIX2 3 0.338000 -0.936000 0.098400 27.29690 1 MTRIX3 3 -0.069800 0.079300 0.994400 -24.96030 1